Daphne Superville
@dasuperville.bsky.social
📤 115
📥 222
📝 4
UCSF PhD candidate @gogalab | MIT ‘17 🦫 | 🇦🇷 🇺🇸|
#metastasis
#tumormicroenvironment
pinned post!
Running NMF on your scRNAseq data? Check out my updates to Lyndsay Murrow's DECIPHER-seq package, now compatible with Seurat v5 objects and rliger v2!
github.com/dasuperville...
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GitHub - dasuperville/DECIPHER-seq-v2: Data and code to reproduce results from DECIPHER-seq paper. Updated for use with Seurat v5 objects and rLiger v2.
Data and code to reproduce results from DECIPHER-seq paper. Updated for use with Seurat v5 objects and rLiger v2. - dasuperville/DECIPHER-seq-v2
https://github.com/dasuperville/DECIPHER-seq-v2
about 1 year ago
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Daphne Superville
Waggoner Lab
11 days ago
Spatial CRISPR screen (SPAC-seq) links Icam1 loss to metastasis a spatially defined immunosuppressive niche and defines a role for CD8 T cell CD44 interaction with SPP1 on macrophages in regulating spatial phenotypes
@cellcellpress.bsky.social
www.cell.com/cell/fulltex...
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reposted by
Daphne Superville
Waggoner Lab
16 days ago
In vivo single-cell ribosome profiling reveals cell-type-specific translational programs during aging
www.cell.com/molecular-ce...
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reposted by
Daphne Superville
Waggoner Lab
16 days ago
Distinct immune landscapes characterize highly versus minimally invasive brain metastases
@insight.jci.org
insight.jci.org/articles/vie...
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reposted by
Daphne Superville
Waggoner Lab
16 days ago
Mitochondrial complex I dysfunction in dendritic cells disrupts NAD+/NADH redox balance and impairs antigen cross-presentation
@sciimmunology.bsky.social
@sancholab.bsky.social
www.science.org/doi/10.1126/...
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reposted by
Daphne Superville
Juliane Winkler
18 days ago
Sweet when you realize that someone out there 🗺️ actually engages with your research
#ProudPI
amazing work from
@dasuperville.bsky.social
, let us know what you think 😃
add a skeleton here at some point
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reposted by
Daphne Superville
Johan Duchêne
24 days ago
TREM2+ macrophages have rapidly emerged as key regulators in diseases. Studying them requires specific antibodies. Among 14 tested antibodies in KO cell lines by WB, 5 are specific. Pick up the right human TREM2 Antibody. Full report:
tinyurl.com/TREM2Ab
Or here:
tinyurl.com/OGA-TREM2
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Daphne Superville
Nature Reviews Cancer
24 days ago
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Remembering inflammation increases cancer risk
Nature Reviews Cancer, Published online: 14 May 2026; doi:10.1038/s41568-026-00938-8Colitis predisposes to colorectal cancer, but how inflammation promotes tumour initiation has remained unclear. Nagaraja et al. show that inflammatory injury imprints a heritable epigenetic memory in colonic stem cells that enhances AP-1-driven proliferative programs and accelerates malignant outgrowth following oncogenic mutation.
http://dlvr.it/TSXZJV
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Daphne Superville
Journal of Clinical Investigation
24 days ago
Expanding the functional repertoire of macrophages as remote healers:
doi.org/10.1172/JCI2...
Camille Blériot
@gustaveroussy.fr
& Florent Ginhoux comment on Salm et al.:
doi.org/10.1172/JCI1...
#PeritonealMacrophages
#WoundHealing
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Daphne Superville
David Ashbrook
25 days ago
Interesting!
doi.org/10.1242/dmm....
"Debates about animal research & alternatives are often framed as a contest between old and new approaches. This framing is both misleading and counterproductive. In practice, modern biomedical research is increasingly characterised by methodological pluralism"
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Why in vivo models of disease remain indispensable
Summary: The call to arms for alternatives to model organisms of disease will fail without ongoing integration with – and validation against – complex animal models and support from the animal modelli...
https://doi.org/10.1242/dmm.052997
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Daphne Superville
Waggoner Lab
25 days ago
#TNBC
tumor microenvironment consists of 49 immune & stromal cell states comprising 8 ecotypes, where macrophage subtypes & cancer-cell IFN signalling, HLA expression & cell cycle programs are associated with response to neoadjuvant chemotherapy
@nature.com
www.nature.com/articles/s41...
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Daphne Superville
Journal of Clinical Investigation
about 1 month ago
Hitting pause on chemotherapy-induced alopecia: Transient p53 activation as a guardian of the hair follicle:
doi.org/10.1172/JCI2...
Edward B. Li, Meredith J. Klay & Rui Yi
@feinberg.northwestern.edu
comment on Gherardini et al.:
doi.org/10.1172/JCI1...
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Daphne Superville
Cancer Cell
about 1 month ago
Online Now: When tissue tension creates a mutagenic niche
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When tissue tension creates a mutagenic niche
In this issue of Cancer Cell, Hayward et al. show that fibrotic tissue tension creates a mechanically organized mutagenic niche. A stiff stroma activates epithelial STAT3, recruits macrophages, and drives NOX-dependent lipid peroxidation, generating diffusible aldehydes that damage epithelial DNA in fibrotic tumors and mammographically dense breast tissue.
http://dlvr.it/TSMMPq
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reposted by
Daphne Superville
bioRxiv Immunology
about 1 month ago
Glutamate transporter xCT is important for cGAS-dependent interferon responses to DNA and to HSV-1
https://www.biorxiv.org/content/10.64898/2026.04.28.721347v1
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Daphne Superville
Cell - a Cell Press journal
about 1 month ago
Now online! Unbiased niche labeling maps immune-excluded niche in bone metastasis
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Unbiased niche labeling maps immune-excluded niche in bone metastasis
An unbiased niche-labeling method, SAMENT, maps cellular and molecular features of metastatic niches and highlights the role of ERα⁺ niche macrophages in preventing T cell infiltration, thereby promoting bone metastasis.
http://dlvr.it/TSHKC5
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Daphne Superville
Journal of Experimental Medicine
about 1 month ago
Read Sensing of metabolic signals via GPR183 promotes occupation of lung
#macrophage
niches by
#monocytes
rupress.org/jem/article/...
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Sensing of metabolic signals via GPR183 promotes occupation of lung macrophage niches by monocytes
Bub et al. use single-cell RNA sequencing and new macrophage depletion models to discover niche-derived signals that promote monocyte-derived macrophages.
https://rupress.org/jem/article/223/4/e20252667/281537/Sensing-of-metabolic-signals-via-GPR183-promotes
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Daphne Superville
Ivan Zanoni
about 1 month ago
#WeekendRead
!
#InterferonPower
!
#EveryCellIsAnImmuneCell
!
@ila07.bsky.social
@cjohansson-lab.bsky.social
Malanchi &co show
@pnas.org
that RSV protects lungs from metastatic cell seeding via type I IFNs that induce Galectin-9 & alter epithelial & endothelial cell incteractions with cancer cells!
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Type I interferons induced upon respiratory viral infection impair lung metastatic initiation | PNAS
Metastatic breast cancer accounts for 7% of cancer-related deaths, with the lungs being a common site of cancer spread. In parallel, lower respirat...
https://doi.org/10.1073/pnas.2412919123
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Daphne Superville
Aguirre-Ghiso Lab
about 1 month ago
We are excited to share our new and third Review in Nature Reviews Cancer, “The sleeping threat: targeting cancer dormancy to transform metastasis therapy.”
www.nature.com/articles/s41...
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The sleeping threat: targeting cancer dormancy to transform metastasis therapy - Nature Reviews Cancer
This Review synthesizes emerging insights into how microenvironmental cues, epigenetic programmes and immune interactions govern disseminated cancer cell dormancy and outlines how advances in dormancy...
https://www.nature.com/articles/s41568-026-00928-w
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Daphne Superville
Nature Reviews Immunology
about 2 months ago
The long-lived immune system of centenarians
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The long-lived immune system of centenarians
Nature Reviews Immunology, Published online: 23 April 2026; doi:10.1038/s41577-026-01291-5What is unique about the immune system of people who live to extreme old age? Here the authors describe that centenarians may achieve such longevity through several mechanisms, including limiting the pathological effects of inflammageing and immunosenescence, preservation of immune surveillance, sustained gut microbial diversity and maintenance of intestinal barrier integrity.
http://dlvr.it/TSBZXt
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Daphne Superville
Cancer Cell
about 2 months ago
Online Now: Precancerous niches as gatekeepers of tumor initiation
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Precancerous niches as gatekeepers of tumor initiation
Clonal competition eliminates most early neoplastic lesions, yet a subset persists and ultimately progresses. In Nature, Skrupskelyte et al. demonstrate that nascent tumors survive by actively reshaping a precancerous niche through epithelial-stromal feedback. This ecological gatekeeping mechanism reframes tumor initiation from a process of mutation accumulation to microenvironmental selection and co-evolution.
http://dlvr.it/TS9MTt
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reposted by
Daphne Superville
Itai Yanai
about 2 months ago
How does a cell learn? In our new perspective in
@nature.com
we propose a model where the properties of the AP-1 family of transcription factors – stress-induced feedback, regulatory combinatorics and cellular memory – encode a mechanism for cellular learning.
www.nature.com/articles/s41...
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Daphne Superville
Nature Reviews Immunology
about 2 months ago
Pathophysiological roles of monocytes and macrophages in cancer
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Pathophysiological roles of monocytes and macrophages in cancer
Nature Reviews Immunology, Published online: 20 April 2026; doi:10.1038/s41577-026-01296-0Monocytes and macrophages adopt modular programmes in response to cancer cells, which can be viewed as an ‘infectious self’ challenge, and cues from the surrounding tissue environment as well as organism-level variables. These pathophysiological programmes offer therapeutic opportunities for cancer immunotherapy.
http://dlvr.it/TS7W2l
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reposted by
Daphne Superville
Cell Reports
about 2 months ago
RNA binding as an emerging regulatory dimension in the type I IFN response
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RNA binding as an emerging regulatory dimension in the type I IFN response
Iselin et al. explore how the type I IFN response regulates RNA-binding activity using RNA-interactome capture and extend the RIC protocol to assess the role of phosphorylation in this process. Focusing on MATR3, they highlight how this protocol extension, phospho-RIC, can be used to identify PTM-driven regulatory events.
http://dlvr.it/TS6k27
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reposted by
Daphne Superville
Immunity
about 2 months ago
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Molecular and cellular bases of trained immunity
In this review, Barreiro and colleagues synthesize molecular and cellular mechanisms of trained immunity across monocytes, tissue-resident macrophages, and HSPCs. They propose a unifying framework linking transcription factor activity, metabolic remodeling, and chromatin dynamics to explain how innate immune memory is established and maintained across cellular hierarchies.
http://dlvr.it/TS6k7h
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reposted by
Daphne Superville
Cancer Cell
about 2 months ago
Intratumoral lymphatics: When less is more
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Intratumoral lymphatics: When less is more
Lymphatic vessels assume two-faced roles in cancer, functioning as facilitators of both immune surveillance and metastasis. In this issue of Cancer Cell, Karakousi et al. establish IFNγ as a key phenotypic and metabolic switch in tumor-associated lymphatic vessels that reinforces antitumor immunity while simultaneously blocking regional metastasis.
http://dlvr.it/TS56s1
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reposted by
Daphne Superville
Aguirre-Ghiso Lab
about 2 months ago
Looks like environment - meets - niche - meets - genetics is starting to gel in the theory of cancer. In the end we will confirm what somatic mosaicism shows us - that niche is king...
www.nature.com/articles/s41...
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Tumour promotion through the lens of evolution - Nature
This Review revisits tumour initiation and promotion in light of clonal diversity and the presence of cancer driver mutations in normal tissues, aiming to understand mechanisms that enable environment...
https://www.nature.com/articles/s41586-026-10386-x
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reposted by
Daphne Superville
Chris Marine Lab
about 2 months ago
Delighted to have contributed to this piece in Cell: Mapping Intratumor Heterogeneity Across Layers, part of the special issue celebrating the Hallmarks of Cancer. Thanks to
@yardenasamuels.bsky.social
for her leadership on this one.
authors.elsevier.com/sd/article/S...
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ScienceDirect.com | Science, health and medical journals, full text articles and books.
https://authors.elsevier.com/sd/article/S0092867426003260
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Daphne Superville
Barbara Marte
about 2 months ago
a wonderful Perspective article
www.nature.com/articles/s41...
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A mechanism for adaptive genome regulation in cancer - Nature
In this Perspective article, a theoretical framework for how the AP-1 family of transcription factors mediates cellular adaptation in cancer drug resistance is proposed.
https://www.nature.com/articles/s41586-026-10269-1
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Daphne Superville
Cancer Cell
about 2 months ago
IFNγ-dependent metabolic reprogramming restrains an immature, pro-metastatic lymphatic state in melanoma
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IFNγ-dependent metabolic reprogramming restrains an immature, pro-metastatic lymphatic state in melanoma
Karakousi et al. uncover a role for IFNγ in regulating tumor-associated lymphatic vessels, linking their metabolic and functional states to immune surveillance and metastasis. Intratumoral lymphatic vessels are specifically dependent on oxidative phosphorylation, highlighting a therapeutic opportunity to restrain new lymphatic growth, prevent metastasis, and promote immune surveillance.
http://dlvr.it/TS1Qzk
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reposted by
Daphne Superville
bioRxiv Cancer Bio
2 months ago
Sustained interferon exposure creates a hyper-metastatic subset of melanoma cells
https://www.biorxiv.org/content/10.64898/2026.04.01.715921v1
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Daphne Superville
Trends in Immunology
2 months ago
Trained immunity responses across infectious diseases and cancer vaccines
#immunology
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Trained immunity responses across infectious diseases and cancer vaccines
Trained immunity (TRIM), a paradigm-shifting concept in immunology, refers to the long-term functional reprogramming of innate immune cells, enabling enhanced responsiveness to secondary challenges through metabolic and epigenetic remodeling. This phenomenon bridges the gap between innate and adaptive immunity, offering novel strategies for vaccine design that transcend traditional antigen-specific approaches. By exploiting the ‘memorylike’ properties of monocytes, macrophages, dendritic cells, neutrophils, and natural killer cells, next-generation vaccines aim to achieve broad-spectrum protection, prolonged durability, and heterologous immunity against pathogens and cancers. This review synthesizes recent advances in TRIM research in vaccines, focusing on its mechanisms, translational applications, and future directions in vaccinology.
http://dlvr.it/TRqvFf
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Daphne Superville
Eric Topol
2 months ago
The Shingles vaccine is linked w/ reduced risk of Alzheimer's in 4 large natural experiments Today, the potential of high-dose flu vaccines vs standard dose in a large retrospective age 65+ cohort for less Alzheimer’s. More pronounced in women (like Shingles vaccines)
neurology.org/doi/pdf/10.1...
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Daphne Superville
Seth Coffelt
2 months ago
📣We've summarized all there is to know about mouse
#gdTcells
in cancer and how they relate to humans
@immunowolf.bsky.social
#AbhiramMallu
#NataliePhinney
check it out here:
authors.elsevier.com/sd/article/S...
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ScienceDirect.com | Science, health and medical journals, full text articles and books.
https://authors.elsevier.com/sd/article/S1471-4906(26)00040-2
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reposted by
Daphne Superville
Waggoner Lab
2 months ago
@biorxivpreprint.bsky.social
Epigenetic control of S100A8/A9-driven monocytic inflammation licenses anti-leukemic functionality of immature NK cells during hematopoietic stem cell differentiation
www.biorxiv.org/content/10.6...
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reposted by
Daphne Superville
Waggoner Lab
2 months ago
Commentary
@cp-cancercell.bsky.social
@crick.ac.uk
@naomiirisvdberg.bsky.social
Immunometabolic gatekeeping: How tissue metabolism conditions tumor immunity
www.cell.com/cancer-cell/...
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Daphne Superville
Immunity
2 months ago
Online now: Krüppel-like factors 2 and 3 regulate T cell exhaustion by directing T cell residency and migration
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Krüppel-like factors 2 and 3 regulate T cell exhaustion by directing T cell residency and migration
During chronic viral infection, CD8+ T cell exhaustion is closely linked to altered migration and tissue residency. Shen et al. identify a reciprocal KLF2-KLF3 transcriptional circuit that controls cellular localization and show that enforcing T cell migration limits terminal exhaustion and promotes effector-like differentiation.
http://dlvr.it/TRkvwg
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reposted by
Daphne Superville
Waggoner Lab
2 months ago
CDK4/6 inhibition enhanced CAR-T cell efficacy by modulating the solid tumor microenvironment and T cell functional state
@moltherapy.bsky.social
@shomgoel.bsky.social
@petermaccc.bsky.social
www.cell.com/molecular-th...
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reposted by
Daphne Superville
Waggoner Lab
2 months ago
Innate imprinting of transcriptional trajectories governs respiratory TRM fate and persistence
@cp-cellreports.bsky.social
www.cell.com/cell-reports...
@uwmadison.bsky.social
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reposted by
Daphne Superville
Johanna Joyce
2 months ago
Chronic inflammation has long been linked to cancer, but how is that history retained in the tissue? In a new
#Nature
study, Nagaraja et al show that colitis leaves a lasting epigenetic memory in colonic stem cells, which persists after inflammation resolves & primes for subsequent tumor growth 🧪🔬
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Remembrance of inflammations past
Chronic inflammation increases the risk of colon cancer. This inflammation drives epigenetic changes in the nucleus of stem cells that promote tumour formation.
https://www.nature.com/articles/d41586-026-00639-0
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Daphne Superville
Journal of Experimental Medicine
2 months ago
Kuhn,
@maxkrummel.bsky.social
et al. demonstrate how local gene editing of cancer-associated fibroblasts alters their cell state and, subsequently, the cellular tumor microenvironment
rupress.org/jem/article/...
#TME
#CAFs
#TumorImmunology
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Daphne Superville
Journal of Experimental Medicine
2 months ago
#Hypoxia-inducible
protein 2 mediates metabolic adaptation of Ly6ChighLy6Glow
#monocytes
after
#stroke
. New study from Weijie Chen, Xin Wang, Tingting Huang, Weifeng Yu, Florent Ginhoux, Peiying Li (Shanghai Jiao Tong University) and colleagues:
rupress.org/jem/article/...
#Neuroinflammation
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Daphne Superville
Waggoner Lab
3 months ago
@biorxivpreprint.bsky.social
systematic mapping of immune landscape alterations during sequential lymph node metastasis in humans provides essential insights for understanding cancer metastasis
www.biorxiv.org/content/10.6...
@universitypress.cambridge.org
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reposted by
Daphne Superville
Waggoner Lab
3 months ago
AP-1 mediates cellular adaptation and memory formation
@natcomms.nature.com
@pennmedicine.bsky.social
@arjunraj.bsky.social
@penngenetics.bsky.social
www.nature.com/articles/s41...
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Daphne Superville
Eugene Vinitsky 🍒
3 months ago
For a recent lab meeting, I wrote up a grab bag of ways to think about your development as a researcher during a PhD:
emerge-lab.github.io/papers/an-un...
Sharing in case folks find it useful or have feedback!
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https://emerge-lab.github.io/papers/an-unsolicited-guide-to-good-research.pdf
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Daphne Superville
Eric Topol
3 months ago
The reactivation of herpes simplex virus (HSV-1, not only herpes zoster) may be tied to accelerated aging and dementia, and account in part for the mechanism of Shingrix vaccine''s protection
www.wired.com/story/shingl...
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The Shingles Virus May Be Aging You More Quickly
Evidence suggests reactivations of the varicella-zoster virus may accelerate aging and raise dementia risk. Now scientists want to know if vaccines and antivirals could help protect the brain.
https://www.wired.com/story/shingles-virus-aging/
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Daphne Superville
Journal of Experimental Medicine
3 months ago
#Myeloid
cells infiltrate tumors from early transformation to advanced disease; however, their plasticity complicates therapeutic targeting. Nogales-Pons et al.
@casanova-acebes.bsky.social
review emerging technologies that uncover unexpected cellular states & functions
rupress.org/jem/article/...
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Daphne Superville
Cancer Cell
3 months ago
Lymph node colonization induces tissue remodeling via immunosuppressive fibroblast-myeloid cell niches supporting metastatic tolerance
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Lymph node colonization induces tissue remodeling via immunosuppressive fibroblast-myeloid cell niches supporting metastatic tolerance
Haist et al. demonstrate that lymph node (LN) colonization induces systems-wide LN remodeling in patients with head-and-neck cancer using multiplex imaging, spatial transcriptomics, and a melanoma model of LN metastasis. The authors identify spatially organized immunomodulatory myeloid/CAF niches as key features of metastatic tolerance that associate with T cell dysfunction and Treg activation beyond the tumor-colonized LN.
http://dlvr.it/TRRny1
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reposted by
Daphne Superville
Cell Press
3 months ago
Lactation supports babies' immune health and reduces the risk of breast cancer for the mother.
spkl.io/63327Avl8f
Abigail Jaquish & Deepshika Ramanan
@cp-trendsimmuno.bsky.social
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reposted by
Daphne Superville
Waggoner Lab
3 months ago
A glucocorticoid–FAS axis controls immune evasion during metastatic seeding
@nature.com
@danafarber.bsky.social
@harvardmed.bsky.social
@judithagudo.bsky.social
www.nature.com/articles/d41...
www.nature.com/articles/s41...
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reposted by
Daphne Superville
Waggoner Lab
3 months ago
@biorxivpreprint.bsky.social
PTPN1/2 inhibits alveolar macrophage-mediated control of lung metastasis
www.biorxiv.org/content/10.6...
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reposted by
Daphne Superville
Barbara Marte
3 months ago
new out in Nature
www.nature.com/articles/s41...
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A disease model resource reveals core principles of tissue-specific cancer evolution - Nature
The Mouse Cancer Cell line Atlas (MCCA) provides major advances towards a mechanistic understanding of cancer genomes.
https://www.nature.com/articles/s41586-026-10187-2
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