Joachim Nielsen
@joachimnielsen.bsky.social
📤 291
📥 207
📝 44
Associate Professor in Muscle Physiology and Metabolism. University of Southern Denmark.
pinned post!
We are ready to scale up glycogen analysis using electron microscopy. By applying a new AI-based image analysis pipeline, workload for 50 samples was reduced from ~600 hours to ~20 hours. This moves us beyond small-scale TEM studies. Details below 👇
5 days ago
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We are ready to scale up glycogen analysis using electron microscopy. By applying a new AI-based image analysis pipeline, workload for 50 samples was reduced from ~600 hours to ~20 hours. This moves us beyond small-scale TEM studies. Details below 👇
5 days ago
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faseb.onlinelibrary.wiley.com/share/KKBJBR...
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Strenuous Exercise Alters Brain Creatine and Glutamate/Glutamine (Glx) in Humans: Evidence From Dynamic 1H‐MRS and 1H‐MRSI
You have to enable JavaScript in your browser's settings in order to use the eReader.
https://faseb.onlinelibrary.wiley.com/share/KKBJBRSPNMIXZHBBEQXQ?target=10.1096/fj.202504543R
16 days ago
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Joachim Nielsen
Jason Cantor
27 days ago
For ~century, we’ve asked: why do proliferating cells ferment glucose even when O2 is around? I’m thrilled to share our latest work
@natmetabolism.nature.com
, led by
@thebiokimist.bsky.social
. By leveraging conditional essentiality in HPLM, we propose a provocative new answer to this classic Q. 🧵
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Joachim Nielsen
Christian Frezza
about 1 month ago
Mitochondrial contact site and cristae organizing system promotes modular assembly of cytochrome c oxidase: Cell Reports
www.cell.com/cell-reports...
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Mitochondrial contact site and cristae organizing system promotes modular assembly of cytochrome c oxidase
Colina-Tenorio et al. show that MICOS interacts with the Cox1 and Cox3 assembly modules and facilitates respiratory complex IV biogenesis. By recruiting assembly factors and the mitochondrial multifun...
https://www.cell.com/cell-reports/fulltext/S2211-1247%2825%2901499-8
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Joachim Nielsen
Matteo Fiorenza
about 2 months ago
📄 New preprint Using deep physiological and molecular phenotyping in individuals carrying a diabetogenic mtDNA mutation, we probe whether, which, and how mitochondrial defects drive insulin resistance in humans. 👇 Link in first comment
#Physiology
#Diabetes
#Mitochondria
#Metabolism
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Joachim Nielsen
Craig A. Goodman
about 2 months ago
Acute effects of resistance exercise on skeletal muscle glycogen depletion: A systematic review and meta-analysis
physoc.onlinelibrary.wiley.com/doi/10.14814...
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Acute effects of resistance exercise on skeletal muscle glycogen depletion: A systematic review and meta‐analysis
To compile and statistically summarize quantitative evidence on the acute effects of resistance training sessions on muscle glycogen concentration, a systematic search was conducted on Pubmed, Web of...
https://physoc.onlinelibrary.wiley.com/doi/10.14814/phy2.70683
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Joachim Nielsen
Sam Lewis, Ph.D.
about 2 months ago
⚡️Mitochondria make ATP, the energy that powers life. But in neurons, with axons up to a meter long, how do these tiny power plants stay functional in the right places? We went looking. 1/n
www.biorxiv.org/content/10.6...
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Self-renewal of neuronal mitochondria through asymmetric division
Mitochondrial ATP production is essential for life. Mitochondrial function depends on the spatio-temporal coordination of nuclear and mitochondrial genome expression, yet how this coordination occurs ...
https://www.biorxiv.org/content/10.64898/2025.12.17.694973v1
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"We find that when glycogen stores are present, they provide remarkable resilience to dopamine nerve terminal function under extreme hypometabolic conditions, but ... impairment of access to glycogen, makes them hypersensitive to fuel deprivation."
www.pnas.org/doi/suppl/10...
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Neuromodulatory control of energy reserves in dopaminergic neurons | PNAS
The brain is a metabolically vulnerable organ as neurons have both high resting metabolic rates and the need for local rapid conversion of carbon s...
https://www.pnas.org/doi/suppl/10.1073/pnas.2523019122
2 months ago
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Joachim Nielsen
eLife
3 months ago
This ‘fundamental’ study uncovers how directing pyruvate into mitochondria can shrink cells by shifting their metabolism away from building amino acids and proteins.
buff.ly/hFHjKy9
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Joachim Nielsen
3 months ago
Super happy to share our latest study on muscle remodeling in human cachexia in patients with lung cancer:
www.biorxiv.org/content/10.1...
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https://www.biorxiv.org/content/10.1101/2025.11.19.689342v2
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Joachim Nielsen
Michael Eisen
4 months ago
Finally, someone has solved a real problem with AI! No more having to take a paper in the format for a journal that rejected you, and reformat it for a new journal. Well done!!
formatmypaper.com
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Joachim Nielsen
Professor Adam P. Sharples
3 months ago
First post on Blue Sky New pre-print! Does muscle remember disuse muscle wasting? Our new study shows skeletal muscle retains a molecular memory of disuse! Young muscle shows transcriptional resilience to repeated atrophy. Aged muscle shows exaggerated susceptibility.
doi.org/10.1101/2025...
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Joachim Nielsen
Richard Sever
3 months ago
Excited to launch an openRxiv partnership with the scientist-run AI review service qed (
@qedscience.bsky.social
), the brainchild of
@odedrechavi.bsky.social
1/n
openrxiv.org/enabling-rev...
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Enabling options for review: from training and transparency to author-centered AI tools - openRxiv
Peer review is widely viewed as a critical aspect of biomedical communication. Ideally, it provides authors with feedback so they can improve manuscripts and gives readers, particularly nonspecialists...
https://openrxiv.org/enabling-review-options/
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Joachim Nielsen
Oded Rechavi
3 months ago
IT'S HAPPENING! 💥 I'm psyched to launch the collaboration between
@qedscience.bsky.social
&
@openrxiv.bsky.social
@biorxivpreprint.bsky.social
! Preprint + q.e.d = your science is out there, and anyone can appreciate it. Let's care about making discoveries, and not on “getting published” (1/3) 👇
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Joachim Nielsen
Paul Greenhaff
4 months ago
Hopefully of interest to scientists and exercise practitioners with and interest in muscle mass and functional gains in human volunteers.
doi.org/10.1113/JP28...
@jphysiol.bsky.social
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NSAID ingestion augments training‐induced muscle hypertrophy and differentially affects muscle mRNA expression, but not strength gains, in trained men
Abstract figure legend Schematic outlining the impact of NSAID ingestion on resistance exercise training-induced changes in muscle morphology, function and gene networks relative to placebo ingestion...
http://doi.org/10.1113/JP289542
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Joachim Nielsen
Nikolai Slavov
4 months ago
This article is a homecoming for me. As a PhD student, I focused on the growth-rate transcriptional regulation in yeast. Now, ~ 20 years later, we report protein regulation scaling with the growth rates of single cells in mammalian tissues.
www.biorxiv.org/content/10.1...
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Principles of protein abundance regulation across single cells in a mammalian tissue
Protein synthesis and clearance are major regulatory steps of gene expression, but their in vivo regulatory roles across the cells comprising complex tissues remains unexplored. Here, we systematicall...
https://www.biorxiv.org/content/10.1101/2025.09.17.676955v1.full
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Joachim Nielsen
Javier Gonzalez
4 months ago
Is Human Energy Expenditure Constrained? I recently debated Herman Pontzer on this topic in Shenzhen, China. My slides can be viewed here:
www.linkedin.com/posts/javier...
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RACMEM Debate: Is Human Energy Expenditure Constrained? | Javier Gonzalez
Is human energy expenditure constrained? This hypothesis was proposed by Herman Pontzer, and has received widespread interest with coverage from mainstream media, podcasts, and even the RI Christmas ...
https://www.linkedin.com/posts/javier-gonzalez-b61615106_racmem-debate-is-human-energy-expenditure-activity-7385648354019667968-7WEM?utm_source=share
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Joachim Nielsen
Chloé Yeung
4 months ago
Manuscript now accepted! 🥳
@steffendanielle.bsky.social
@valerioizzi.bsky.social
@abigailmackey1.bsky.social
@ismcopenhagen.bsky.social
Spatially distinct ECM-producing fibroblasts and myonuclei orchestrate early adaptation to mechanical loading in the human muscle-tendon unit
add a skeleton here at some point
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The Expanding Clinical and Genetic Spectrum of Muscle Glycogen Storage Disease 0, (GSD0B) - Donoghue - 2025 - American Journal of Medical Genetics Part A - Wiley Online Library
onlinelibrary.wiley.com/doi/10.1002/...
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The Expanding Clinical and Genetic Spectrum of Muscle Glycogen Storage Disease 0, (GSD0B)
Glycogen storage disorders are a group of genetic disorders affecting glucose homeostasis in the body. Muscular glycogen stores are essential for liberating glucose for energy supply during bursts of...
https://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.64149
4 months ago
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Joachim Nielsen
Matthew Alexander, PhD
4 months ago
New
#scisignal
paper: Phosphorylation of RYR1 at Ser2902 decreases Ca2+ leak in skeletal muscle and susceptibility to malignant hyperthermia and heat stroke.
#Myoblue
tinyurl.com/bddss3j6
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Phosphorylation of RYR1 at Ser2902 decreases Ca2+ leak in skeletal muscle and susceptibility to malignant hyperthermia and heat stroke
Reducing Ca2+ leak through mutant RYR1 prevents pathological heat production in skeletal muscle.
https://tinyurl.com/bddss3j6
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Joachim Nielsen
Aydin Lab
4 months ago
Excited to share that our paper on mitochondrial cardiolipin dynamics is published in
@natcomms.nature.com
today! We provide molecular explanations for unique aspects of mitochondrial morphology and the mechanisms underlying cardiolipin-related Barth Syndrome.
www.nature.com/articles/s41...
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Cardiolipin dynamics promote membrane remodeling by mitochondrial OPA1 - Nature Communications
This study reveals how cardiolipin governs mitochondrial morphology by modulating the activity of human OPA1 and how its replacement by monolyso-cardiolipin, as observed in Barth syndrome, impacts mitochondrial membrane-shaping mechanisms.
https://www.nature.com/articles/s41467-025-63813-4
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Our new preprint! Great effort by Martin de Almeida and Amalie Platz has led to the discovery that training increases mitochondrial cristae density.
www.biorxiv.org/cgi/content/...
Thanks to Niels Ørtenblad at SDU and Kurt Højlund and Maria Petersen at Steno Diabetes Center Odense. 🧵 Thread below…
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Mitochondrial cristae density is increased following high-intensity interval training in patients with type 2 diabetes
Aims/hypothesis: Mitochondrial cristae architecture is a key determinant of oxidative capacity in skeletal muscle. While mitochondrial dysfunction is common in type 2 diabetes, it remains unclear whet...
https://www.biorxiv.org/cgi/content/short/2025.09.29.678437v1
4 months ago
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Joachim Nielsen
Sakamoto Lab
4 months ago
Check out our latest preprint from the lab, spearheaded by researcher
@itsmedipsikha.bsky.social
, investigating the distinctive roles of regulatory gamma subunits of the AMPK protein complex in small molecule activator-stimulated skeletal muscle glucose uptake.
www.biorxiv.org/content/10.1...
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Common and distinct roles of AMPKγ isoforms in small-molecule activator-stimulated glucose uptake in mouse skeletal muscle
Objective: Small-molecule activators targeting the allosteric drug and metabolite (ADaM) site of AMPK enhance insulin-independent glucose uptake in skeletal muscle and lower glucose in preclinical mod...
https://www.biorxiv.org/content/10.1101/2025.09.26.678768v1
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Electron tomography reveals mitochondrial network and cristae remodelling during cell differentiation in the human placenta
Mitochondria adapt their structure through fusion and fission, yet how their morphology and cristae architecture alter as cells differentiate remains unclear. The human placenta is an ideal model for ...
https://www.biorxiv.org/content/10.1101/2025.06.09.658204v1
5 months ago
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Joachim Nielsen
Experimental Physiology
5 months ago
Does biological sex impact the rate of intrinsic mitochondrial respiration in the presence of creatine in human skeletal muscle? Emily J. Ferguson (
@queensuresearch.bsky.social
) et al. investigate! 📜
buff.ly/46B6lzL
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Joachim Nielsen
bioRxiv Physiology
5 months ago
Mechanical Loading Induces the Longitudinal Growth of Muscle Fibers via an mTORC1-Independent Mechanism
https://www.biorxiv.org/content/10.1101/2025.09.19.676647v1
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Divergent Changes in Peak Fat Oxidation and Fatmax Following 3-Day Dietary Interventions Are Related to Muscle Glycogen Availability in Men by Tarry, Vestergaard, Petersen, Olsen, Ingersen, Connor, Pilegaard, Dela, Larsen, Shaw, and Helge
onlinelibrary.wiley.com/share/CDCGW2...
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Divergent Changes in Peak Fat Oxidation and Fatmax Following 3‐Day Dietary Interventions Are Related to Muscle Glycogen Availability in Men
You have to enable JavaScript in your browser's settings in order to use the eReader.
https://onlinelibrary.wiley.com/share/CDCGW27S23NJJ3TUWKU4?target=10.1111/sms.70132
5 months ago
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Joachim Nielsen
Nature Reviews Disease Primers
5 months ago
Sarcopenia is accelerated loss of skeletal muscle mass and function commonly, but not exclusively, associated with advancing age. It is observed across many species including humans in whom it can lead to decline in physical function and mobility.
https://www.nature.c...
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Joachim Nielsen
Craig A. Goodman
6 months ago
Congrats to Steffen Raun, Lykke Sylow and Team for their new Redox Biology paper, "Skeletal muscle Rac1 mediates exercise training adaptations towards muscle glycogen resynthesis and protein synthesis", that included the CMR's Prof Paul Gregorevic
www.sciencedirect.com/science/arti...
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Skeletal muscle Rac1 mediates exercise training adaptations towards muscle glycogen resynthesis and protein synthesis
Long-term exercise training elicits tremendous health benefits; however, the molecular understanding is incomplete and identifying therapeutic targets…
https://www.sciencedirect.com/science/article/pii/S221323172500357X
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Joachim Nielsen
Michele Zanini
6 months ago
🚨 The last paper of my PhD is out in @MSSE Regular Long Runs and Higher Training Volumes are Associated with Better Running Economy Durability in Performance Matched Well-Trained Male Runners 🙏🏻 Rich Blagrove & Jonathan Folland Temporary free download. 🔗
journals.lww.com/acsm-msse/ab...
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Elegant study on glycogen using the one-legged exercise model: Exercise- and diet-induced glycogen depletion impairs performance during one-legged constant-load, high-intensity exercise in humans Thomassen, McKenna, Olmedillas, Wyckelsma, Bangsbo, Nordsborg
www.frontiersin.org/journals/phy...
6 months ago
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Joachim Nielsen
Sakamoto Lab
6 months ago
Congratulations to Researcher
@itsmedipsikha.bsky.social
for being one of the recipients of the EFSD/Lilly Young Investigator Awards! We celebrated her achievement with some cakes and bubbles earlier 🥳
@easdnews.bsky.social
@cbmr.science
www.europeandiabetesfoundation.org/recipients/e...
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Join our PhD course in metabolism and EC coupling. November 10-15. University of Southern Denmark. Enrol here:
www.sdu.dk/en/forskning...
6 months ago
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Joachim Nielsen
Javier Gonzalez
6 months ago
New paper! Do ketone esters affect post-exercise recovery?
doi.org/10.1007/s003...
#ketones
#exercise
#sports
#nutrition
#recovery
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www.biorxiv.org/content/10.1...
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Glycogen metabolism in mouse embryonic Sertoli cells sustains the germ line through the lactate shuttle
Metabolites are key regulators of cell fate decisions, epigenetic remodeling, and lineage commitment. While genetic pathways governing testis differentiation are well studied, the role of metabolism r...
https://www.biorxiv.org/content/10.1101/2025.07.23.666216v1
6 months ago
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Joachim Nielsen
Kevin Murach
6 months ago
“Muscle memory theory: A critical evaluation” in @JPhysiol led by postdoc Nate Serrano
physoc.onlinelibrary.wiley.com/doi/10.1113/...
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Muscle memory theory: A critical evaluation
Click on the article title to read more.
https://physoc.onlinelibrary.wiley.com/doi/10.1113/JP289597
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Joachim Nielsen
The Journal of Physiology
7 months ago
#Research
by Léo Blervaque et al. examines
#capillary-to-sarcolemma
distance and location of cytochrome c oxidase, offering insights for maximal O2 uptake and muscle lactate release in trained athletes 🚴♂️ 🔎 📜 Read the study here:
physoc.onlinelibrary.wiley.com/doi/10.1113/...
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Joachim Nielsen
Olivier Borkowski
7 months ago
The Hands-On Growth Laws Theory Cookbook
doi.org/10.48550/arX...
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Joachim Nielsen
Frank Schnorrer
7 months ago
Microtubules: the architect of muscles. Watch how microtubules transport mitochondria in proximity to energy consuming sarcomeres in muscles of flies and mice.
@jeromeavellaneda.bsky.social
@nunoluis.bsky.social
@ibdm.bsky.social
with
@gomeslabo.bsky.social
www.sciencedirect.com/science/arti...
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Joachim Nielsen
Craig A. Goodman
7 months ago
Structure and function of the neuromuscular junction in health and myasthenia gravis
www.sciencedirect.com/science/arti...
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Structure and function of the neuromuscular junction in health and myasthenia gravis
The neuromuscular junction (NMJ) connects a motor neuron to a skeletal muscle cell. Cholinergic synaptic transmission enables muscle contraction, whic…
https://www.sciencedirect.com/science/article/abs/pii/S0074774225000510
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Joachim Nielsen
Craig A. Goodman
7 months ago
Morphological differences in myofibre size and shape: A comparative study of the soleus, gastrocnemius, triceps brachii and vastus lateralis in humans and mice
onlinelibrary.wiley.com/doi/10.1111/...
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Morphological differences in myofibre size and shape: A comparative study of the soleus, gastrocnemius, triceps brachii and vastus lateralis in humans and mice
Myofibre size and shape were investigated in functionally distinct muscles of humans and mice using ATPase histochemistry and immunofluorescence. In both species, soleus myofibres were found to be la...
https://onlinelibrary.wiley.com/doi/10.1111/joa.70025
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Joachim Nielsen
Oded Rechavi
7 months ago
I love the idea of "micropublications"
www.micropublication.org
(preparing one now)
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microPublication - Get Your Data Out, Be Cited
https://www.micropublication.org/
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Joachim Nielsen
Sakamoto Lab
7 months ago
Commentary by Researcher
@itsmedipsikha.bsky.social
on the emerging role of glycogen metabolism in regulating energy homeostasis in adipose tissue is out now on
@natrevendo.nature.com
@cbmr.science
www.nature.com/articles/s41...
add a skeleton here at some point
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Joachim Nielsen
Julien Ochala
7 months ago
Our department
@ucph.bsky.social
is looking for a new faculty member! This is a nice environment for an ambitious PI with a research focus on cardiovascular system, metabolism and/or drug discovery! Happy to answer questions if you are interested!
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164414 Tenure Track Assistant Professor or Associate Professor of Biomedical Sciences
https://jobportal.ku.dk/videnskabelige-stillinger/?show=164414
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News from our lab: 4 weeks of altitude decreases skeletal muscle mitochondrial cristae density in humans (but mitochondrial respiration increased). Great work by Camilla Schytz, Carsten Lundby, and colleagues.
doi.org/10.1152/japp...
7 months ago
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Capillary‐to‐sarcolemma distance and location of cytochrome c oxidase: Insights for maximal O2 uptake and muscle lactate release in trained athletes - Blervaque - The Journal of Physiology - Wiley Online Library
physoc.onlinelibrary.wiley.com/doi/abs/10.1...
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Capillary‐to‐sarcolemma distance and location of cytochrome c oxidase: Insights for maximal O2 uptake and muscle lactate release in trained athletes
Abstract figure legend In highly-trained endurance athletes, the mean capillary-to-sarcolemma diffusion distance was correlated with maximal oxygen uptake (V̇O2max${\dot V_{{{\mathrm{O}}_2}{\mathrm{m...
https://physoc.onlinelibrary.wiley.com/doi/abs/10.1113/JP288318
7 months ago
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Joachim Nielsen
Alessio Bricca
7 months ago
The Illusion of Simplicity in Therapeutic Exercise Therapeutic exercise requires personalization, supervision, and continuous adaptation. Read how we took this into account in our Nature Medicine paper
www.nature.com/articles/s41...
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Exercise therapy and self-management support for individuals with multimorbidity: a randomized and controlled trial - Nature Medicine
The authors report findings from the MOBILIZE trial, which found that exercise therapy and self-management support improved patient-reported quality of life in individuals with multiple chronic condit...
https://www.nature.com/articles/s41591-025-03779-4
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Joachim Nielsen
Craig A. Goodman
8 months ago
Altered Relaxation and Mitochondria-Endoplasmic Reticulum Contacts Precede Major (Mal)Adaptations in Aging Skeletal Muscle and Are Prevented by Exercise
onlinelibrary.wiley.com/doi/10.1111/...
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Altered Relaxation and Mitochondria‐Endoplasmic Reticulum Contacts Precede Major (Mal)Adaptations in Aging Skeletal Muscle and Are Prevented by Exercise
Slowed relaxation and altered MERCs embody early stages of aging in muscle, and are prevented by regular exercise.
https://onlinelibrary.wiley.com/doi/10.1111/acel.70137?af=R
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Please consider to join us in Odense, Denmark, for this PhD course
@myoblue.bsky.social
add a skeleton here at some point
8 months ago
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Joachim Nielsen
Peer Community in Registered Reports
8 months ago
NEW: Statement from the PCI RR Managing Board on the withdrawal of Infant and Child Development as a PCI RR-friendly journal, and the decision by Wiley to refuse preprints that have been peer-reviewed by
@peercommunityin.bsky.social
/
@pci-regreports.bsky.social
Read here ➡️
osf.io/tn8mh
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