Elif Karagöz
@gekaragoz.bsky.social
📤 422
📥 667
📝 22
Group leader at Max Perutz Labs interested in protein quality control
reposted by
Elif Karagöz
Max Perutz Labs Vienna
9 days ago
🔬 Love science and keeping a lab running smoothly? Join the
@leeboratory.bsky.social
as a lab manager/research technician and help uncover how cells choose and maintain their identity 🧫 More information ➡️
tinyurl.com/y7a8he88
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Elif Karagöz
Yamuna Krishnan
12 days ago
Organelles do NOT have a single uniform pH. And if you think they must, because “protons diffuse fast,” this paper is for you. A thread on why that assumption is wrong; and what we found instead. 🧵 1/n
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A proud moment for me and our lab. Sanya defended her thesis with flying colors. Thanks to the reviewers for the fruitful discussion and their feedback.
add a skeleton here at some point
13 days ago
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Elif Karagöz
Life Science Alliance
19 days ago
Take a look at this recently published paper in LSA: The unfolded protein response in progeria arteries originates from non-endothelial cell types
@maxperutzlabs.ac.at
@gekaragoz.bsky.social
www.life-science-alliance.org/content/9/2/...
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Elif Karagöz
Roberto Covino
23 days ago
The Frankfurt Institute for Advanced Studies (FIAS) and the newly funded Cluster of Excellence SCALE are seeking several Independent Research Group Leaders to drive theoretical and computational research in molecular and cellular life science.
fias.institute/de/das-fias/...
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Independent Research Group Leaders (f/m/d) SCALE / FIAS
https://fias.institute/de/das-fias/freie-stellen/independent-research-group-leaders-f-m-d-scale/
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reposted by
Elif Karagöz
Life Science Alliance
26 days ago
Progeroid endothelial cells do not show a robust activation of the unfolded protein response, contrary to what has been reported in other arterial cell types such as vascular smooth muscle cells
@maxperutzlabs.ac.at
,
@gekaragoz.bsky.social
www.life-science-alliance.org/content/9/2/...
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Elif Karagöz
Yasin Dagdas
27 days ago
Glad to have this finally published:
www.sciencedirect.com/science/arti...
lots of new data since the
#preprint
. If you are into selective
#autophagy
,
#evolution
,
#proteostasis
Please have a look!
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reposted by
Elif Karagöz
Green Lab JHMI
about 1 month ago
Check out our latest work on how collided ribosomes activate the MAP3K ZAK! 💫
www.nature.com/articles/s41...
A fun collaboration with
@beckmannlab.bsky.social
@doubleshuang.bsky.social
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ZAK activation at the collided ribosome - Nature
The kinase ZAK is activated at collided ribosomes to mediate the ribotoxic stress response.
https://www.nature.com/articles/s41586-025-09772-8
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Elif Karagöz
Mikko Taipale
about 1 month ago
We are looking for a postdoctoral fellow to work on induced proximity 🤜🤛 and functional genomics! Join our team in Toronto 🇨🇦 to tackle major challenges in oncology and neurodegeneration.
www.nature.com/naturecareer...
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POSTDOCTORAL FELLOW - Toronto (City), Ontario (CA) job with Taipale Lab, Donnelly Centre, University of Toronto | 12849004
The Taipale lab in the Donnelly CCBR and University of Toronto is looking for a highly motivated Postdoctoral Fellow
https://www.nature.com/naturecareers/job/12849004/postdoctoral-fellow
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reposted by
Elif Karagöz
Kristina Stapornwongkul
about 2 months ago
Join our vibrant scientific community
@viennabiocenter.bsky.social
! It’s an extremely supportive environment to start a lab 🚀
www.imp.ac.at/career/open-...
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Elif Karagöz
Buzz Baum
about 2 months ago
We have wondered what a complex archaeal cell might look like ever since 2014. It’s been a long road (and the journey is far from over), but it’s a good time to pause for breath and look. These Asgard archaeal cells are a surprise! And that is the joy of being a cell biologist.
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Elif Karagöz
Institute of Molecular Biotechnology
about 2 months ago
New paper alert! Scientists in Julius Brennecke’s lab at IMBA and Clemens Plaschka’s lab at
@impvienna.bsky.social
solved a decade-old puzzle, uncovering how the information molecule mRNA travels from the cell’s nucleus to its periphery. More:
https://imba.science/3Xl2hJ3
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reposted by
Elif Karagöz
Max Perutz Labs Vienna
about 2 months ago
Big news! Group leader Sascha Martens has been awarded a prestigious
@erc.europa.eu
Synergy Grant for the collaborative project DegrAbility to explore how cells can better recycle harmful protein aggregates linked to diseases like Alzheimer’s ➡️
tinyurl.com/2zuz9jcf
@univie.ac.at
@meduniwien.ac.at
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reposted by
Elif Karagöz
Max Perutz Labs Vienna
about 2 months ago
📢 Open Call! The Max Perutz Labs invite applications for a Tenure-Track Professorship in Genome Biology. We are particularly interested in researchers investigating the molecular and biophysical mechanisms underlying genome function and regulation. More details ➡️
tinyurl.com/3t7vvdct
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Elif Karagöz
Yasin Dagdas
about 2 months ago
This Halloween, we have a spooky evolutionary story for you. The brainchild of
@delaconcepcionjc.bsky.social
, Nick Irwin and our fantastic collaborators is now out in
@natplants.nature.com
www.nature.com/articles/s41...
Here’s why I love this work — and why I think you’ll enjoy it too. 👇
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Elif Karagöz
Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦
about 2 months ago
🚨Our collaboration with
@centriolelab.bsky.social
&
@gautamdey.bsky.social
is out today in
@cp-cell.bsky.social
We show that
#Expansion
#Microscopy
is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky
#SciComm
#SciSky
www.cell.com/cell/fulltex...
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reposted by
Elif Karagöz
Elias Adriaenssens
about 2 months ago
Our latest review is now online! 👇
@martenslab.bsky.social
Mechanism of autophagy initiation by transmembrane selective autophagy receptors | The EMBO Journal
www.embopress.org/doi/full/10....
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Mechanism of autophagy initiation by transmembrane selective autophagy receptors | The EMBO Journal
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.
https://www.embopress.org/doi/full/10.1038/s44318-025-00615-w
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reposted by
Elif Karagöz
Max Perutz Labs Vienna
about 2 months ago
📢 Open Call! The Max Perutz Labs invite applications for a Full Professorship in Integrative Structure Biology with a focus on in situ structural biology using cryo-electron tomography (cryo-ET) and related methods. More details ➡️
tinyurl.com/brswbymu
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reposted by
Elif Karagöz
GBM (Gesellschaft für Biochemie und Molekularbiologie)
2 months ago
🎉 Huge congrats to Maya Schuldiner from the Weizmann Institute (Israel) for the 🏅 Otto Warburg Medal 2026! Her work on how proteins find their way to organelles and how these organelles talk to each other has reshaped how we think about cells 🧬✨
#OWM
#WeizmannInstitute
@elsevierconnect.bsky.social
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reposted by
Elif Karagöz
Holthuis Lab
2 months ago
Proud to share a preprint of our paper on how bridge-like lipid transport protein VPS13C senses lysosomal membrane tension in anticipation of membrane lesions to initiate net ER-to-lysosome lipid transfer for efficient lysosomal repair
www.biorxiv.org/content/10.1...
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VPS13C/PARK23 initiates lipid transfer and membrane remodeling for efficient lysosomal repair
Perturbations in lysosome integrity are tightly linked to neurological disorders and ageing, but the underlying pathogenic mechanisms are incompletely understood. Using an unbiased proteomic approach,...
https://www.biorxiv.org/content/10.1101/2025.10.23.684214v1
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reposted by
Elif Karagöz
David Teis
2 months ago
Quiescent cells stay alive by eating less. They downregulate amino acid transporters to match reduced demand. When this brake fails -> cell death & disease. More info in our new paper 👇
add a skeleton here at some point
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Elif Karagöz
Oded Rechavi
2 months ago
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
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Elif Karagöz
Kathrin Lang
2 months ago
🚨Our paper is out! 🥳 Hijacking a bacterial ABC transporter for efficient genetic code expansion. Many congrats to everyone involved - a multi-year effort led by
@taruniype.bsky.social
@maxfottner.bsky.social
www.nature.com/articles/s41...
it all started years ago with a failed experiment 🧵👇 1/9
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Hijacking a bacterial ABC transporter for genetic code expansion - Nature
Bacterial ATP-binding cassette (ABC) transporters can be utilized and engineered to transport non-canonical amino acids into Escherichia coli for highly efficient synthesis of proteins with novel func...
https://www.nature.com/articles/s41586-025-09576-w
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reposted by
Elif Karagöz
Max Perutz Labs Vienna
2 months ago
RNA biology is a major research focus at the Perutz - and the new
@fwf-at.bsky.social
grants strengthen it even further 🙌 Elif Karagöz and Pavel Kovarik will investigate how RNA-binding proteins regulate cellular stress and immune responses ➡️
tinyurl.com/2s3f3mu8
@univie.ac.at
@meduniwien.ac.at
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reposted by
Elif Karagöz
Kresten Lindorff-Larsen
3 months ago
A good day to remember John Gurdon’s school report from his biology master at Eton
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Elif Karagöz
Susan Shao
3 months ago
Beautiful reconstitution of amino acid stress-dependent ISR activation by my
@harvardcellbio.bsky.social
colleagues presenting a unifying mechanism for GCN2 activation, which requires ribosome collisions and is enhanced by cognate uncharged tRNA in the A site!
www.science.org/doi/10.1126/...
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GCN1 couples GCN2 to ribosomal state to initiate amino acid response pathway signaling
During nutrient deprivation, activation of the protein kinase GCN2 regulates cell survival and metabolic homeostasis. In addition to amino acid stress, GCN2 is activated by a variety of cellular stres...
https://www.science.org/doi/10.1126/science.ads8728
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Elif Karagöz
John Ngo
3 months ago
🚀 Our new paper is out
@natmethods.nature.com
! Kuffer & Marzilli engineered conditionally stable MS2 & PP7 coat proteins (dMCP & dPCP) that degrade unless bound to RNA, enabling ultra–low-background, single-mRNA imaging in live cells. 🔗
www.nature.com/articles/s41...
🧬
www.addgene.org/John_Ngo/
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Elif Karagöz
Laura Lorenzo Orts
3 months ago
I am excited to announce that I will be moving to IMB Mainz next year! The Winter call for the IPP PhD program is now open; if you are interested in maternal
#mRNA
regulation and
#translation
in early vertebrate development, please apply! Deadline: 16 October. More info:
www.imb.de/students-pos...
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Laura Lorenzo Orts
IMB Mainz
https://www.imb.de/students-postdocs/international-phd-programme/apply-to-ipp/projects-offered/laura-lorenzo-orts
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reposted by
Elif Karagöz
Itay Budin
3 months ago
Very excited to share new work out today in
@natchembio.nature.com
on a new approach - FACES - for selectively imaging of phospholipids and other biomolecules at spatial resolutions down to individual membrane leaflets (1/n)
www.nature.com/articles/s41...
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Leaflet-specific phospholipid imaging using genetically encoded proximity sensors - Nature Chemical Biology
An approach combining bioorthogonal chemistry with genetically encoded fluorogen-activating proteins enables subcellular imaging of phospholipids and glycans, as well as the visualization of lipid tra...
https://www.nature.com/articles/s41589-025-02021-z
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reposted by
Elif Karagöz
Max Perutz Labs Vienna
4 months ago
Opportunity for skilled hands and sharp minds - at any career stage! 💪 The Köhler Lab is seeking a full-time lab technician to support their research on nuclear envelope biology, chromatin regulation, and cellular stress resilience - apply here ➡️
tinyurl.com/bdfy3w2h
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Elif Karagöz
Olivia Coleman
4 months ago
Thank you for including our Paper as a highlight! for anyone interested in the accompanying blog post:
go.nature.com/4mFNYdb
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Unravelling how the stress sensor ATF6 stirs up trouble (and tumors)
https://go.nature.com/4mFNYdb
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Elif Karagöz
Karolin Luger
4 months ago
Fantastic opportunity. Vienna rocks!
add a skeleton here at some point
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Elif Karagöz
Luisa Cochella
4 months ago
Our work on the function of miR-51/miR-100 is out! miR-100 is widely conserved across eumetazoans but its function has been mysterious. Emilio Santillán found in worms it regulates signaling and extracellular matrix genes, some of which seem to be conserved targets!
www.science.org/doi/10.1126/...
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An ancient and essential miRNA family controls cellular interaction pathways in C. elegans
A microRNA that arose at the origin of eumetazoans regulates cell adhesion and signaling in C. elegans through conserved targets.
https://www.science.org/doi/10.1126/sciadv.adz1934
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Elif Karagöz
Martin Loose
4 months ago
We are looking for a Master’s student to join a project on in vitro reconstitution of signaling networks in pathogen–host interactions: combine protein biochemistry, fluorescence microscopy & image analysis. Deadline: September 15. Find out more and apply here:
ist.ac.at/en/job/maste...
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Master Thesis Position – Loose Research Group
Our Group The Loose lab at the Institute of Science and Technology Austria (ISTA) is looking for a highly motivated Master student to join our research on the in vitro reconstitution of signaling n...
https://ist.ac.at/en/job/master-thesis-position-loose-research-group/
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Elif Karagöz
Nature Cell Biology
4 months ago
💫NEW: Mauthe et al. find that protein aggregate clearance requires fragmentation of the aggregate by a chaperone module and a proteasomal regulatory particle for recruitment and clustering of selective
#autophagy
receptors to initiate phagophore formation.
bit.ly/3JJeJPp
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A chaperone-proteasome-based fragmentation machinery is essential for aggrephagy - Nature Cell Biology
Mauthe et al. find that protein aggregate clearance requires fragmentation of the aggregate by a chaperone module and a proteasomal regulatory particle for recruitment and clustering of selective auto...
https://bit.ly/3JJeJPp
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Elif Karagöz
Dan Grabarczyk
4 months ago
Glad to share the final version of our story about the UBR4 complex, an E4 ligase protein quality control hub
@science.org
. Now with more cryo-EM structures and a deeper dive into substrate recognition, especially escaped mitochondrial proteins
@clausenlab.bsky.social
www.science.org/doi/10.1126/...
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Elif Karagöz
Dan Grabarczyk
4 months ago
Happy to share our work on the structure and function of the unusual E3 ligase ZNFX1
@cp-cell.bsky.social
. It uses a nucleic acid-activated transthiolation mechanism, ubiquitinating and clustering RNA to protect cells in an immune response.
@clausenlab.bsky.social
www.cell.com/cell/fulltex...
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A split-site E3 ligase mechanism enables ZNFX1 to ubiquitinate and cluster single-stranded RNA into ubiquitin-coated nucleoprotein particles
Grabarczyk et al. show the structure and mechanism of a non-canonical ubiquitin ligase, which is activated through nucleic-acid-induced oligomerization and is critical for cell survival during immune ...
https://www.cell.com/cell/fulltext/S0092-8674%2825%2900920-1
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Elif Karagöz
4 months ago
📢 New preprint: Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes. We addressed a long-standing question that people debated already in the 1970s - but it still remained open: Do proteins in crystals move as they do in solution? We used ring flips to find out. 1/n
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Exciting new work from Dagdas lab! Congrats to Alibek and all the team!
add a skeleton here at some point
5 months ago
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Elif Karagöz
Carolin Klose
5 months ago
Excited to share our latest study in
@natcomms.nature.com
, where we characterize the chaperone function of the ER membrane protein complex (EMC)—supporting membrane protein biogenesis beyond insertion! 1/9
www.nature.com/articles/s41...
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The EMC acts as a chaperone for membrane proteins - Nature Communications
Membrane proteins are essential for any cell but difficult to fold. Here, the authors show that the EMC acts as a chaperone for membrane proteins. They dissect client recognition and provide a molecul...
https://www.nature.com/articles/s41467-025-62109-x#article-info
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Elif Karagöz
Christa Buecker
5 months ago
My colleagues are awesome!
add a skeleton here at some point
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Elif Karagöz
Marco Hein
6 months ago
Join us at the Perutz, part of the Vienna Biocenter! Opening for a full professorship in Molecular Mechanisms of Disease 👇🏻
@maxperutzlabs.bsky.social
@viennabiocenter.bsky.social
@univie.ac.at
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Elif Karagöz
Max Perutz Labs Vienna
6 months ago
📢 Open Call! The Max Perutz Labs invite applications for a Full Professorship in Molecular Mechanisms of Disease. More information ➡️
tinyurl.com/3yn883b8
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Elif Karagöz
SFB Targeted Protein Degradation
6 months ago
👏 Big CONGRATS to
@sramundo.bsky.social
for receiving an FWF
@fwf-at.bsky.social
ASTRA Award 🌠✨ See all about it 👇
add a skeleton here at some point
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Elif Karagöz
Cristian Prieto-Garcia
about 1 year ago
It is finally out! My first Science paper is online and it does not seem real😃. I am Incredibly happy! Really thanks to all my coauthors and special mention to my incredible supervisor Ivan Dikic for all the support and trust ! 🫶.
#RNA
#Proteostasis
#ubiquitin
#autophagy
#RP
doi.org/10.1126/scie...
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Pathogenic proteotoxicity of cryptic splicing is alleviated by ubiquitination and ER-phagy
RNA splicing enables the functional adaptation of cells to changing contexts. Impaired splicing has been associated with diseases, including retinitis pigmentosa, but the underlying molecular mechanis...
https://doi.org/10.1126/science.adi5295
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Elif Karagöz
Petr Svoboda
6 months ago
#TCTeAC
... what's more than organizing one conference? Two conferences! This one is more Day Science on biology of Argonaute proteins from prokaryotes to Metazoa. Great line up of invited speakers. Some special fun included!
add a skeleton here at some point
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Elif Karagöz
Saarikangas lab
7 months ago
Last call to apply for the Susan Lindquist School on Proteostasis EMBO-FEBS Lecture Course, 16-19 Sept 2025 in Espoo, Finland! Open for postdocs and PhD students. DL June 15!
meetings.embo.org/event/25-pro...
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Elif Karagöz
Alper Akay
7 months ago
Are you interested in doing a masters in RNA biology? We are accepting students for 2-years masters by research degree (1 year research, 1 year write up). Only 1 year tuition fees (£25k international, £5k home) fees include bench fees normally worth £4k.
@biouea.bsky.social
www.theakaylab.com
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RNA (epi)genetics and germline development
https://www.theakaylab.com
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Elif Karagöz
The EMBO Journal
7 months ago
REFEREE 1: “I conclude with a simple, direct statement - this is the best paper I have read all year!”
#TransparentPeerReview
Co-evolving infectivity and expression patterns drive the diversification of endogenous retroviruses
@juliusbrennecke.bsky.social
et al
www.embopress.org/doi/full/10....
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