Francis O'Reilly
@fjoreilly.bsky.social
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Structural Systems Biology at NCI/NIH. Views are my own.
#TeamMassSpec
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Kevin Drew
2 months ago
We are excited to share our preprint describing DirectContacts2! Here we develop a machine learning model to discriminate between direct and indirect protein interactions. We use our model to construct a highly accurate wiring diagram of the human cell.
www.biorxiv.org/content/10.1...
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DirectContacts2: A network of direct physical protein interactions derived from high-throughput mass spectrometry experiments
Cellular function is driven by the activity proteins in stable complexes. Protein complex assembly depends on the direct physical association of component proteins. Advances in macromolecular structur...
https://www.biorxiv.org/content/10.1101/2025.07.17.665435
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โผ๏ธ Exciting new preprint from a close collaboration with Kylie Walters' group. Our study maps the binding sites of key regulators of the proteasome in situ.
www.biorxiv.org/content/10.1...
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Structures of dynamic interactors at native proteasomes by PhIX-MS and cryoelectron microscopy
Proteasome function depends on a network of transient interactions that remain structurally and functionally unresolved. We developed PhIX-MS (Photo-induced In situ Crosslinking-Mass Spectrometry), a ...
https://www.biorxiv.org/content/10.1101/2025.07.31.667872v1
about 2 months ago
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Marcel Dickmanns | ๐ฟโ๏ธ๐ฌ
2 months ago
New preprint: In situ Architecture of
#Plasmodesmata
. Using
#cryoET
,
#AlphaFold
& proteomics, we uncover the native organization of plant intercellular nanopores. ๐
doi.org/10.1101/2025...
๐งช๐งต1/n
#teamtomo
#PlantScience
#Physcomitrium
#Arabidopsis
#cryoEM
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A great lineup of speakers!
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2 months ago
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Time to get signed up for the next Symposium on Structural Proteomics! This time in beautiful Milan 6th-8th October.
ssp2025.squarespace.com
2 months ago
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Savitski Lab
3 months ago
Beautiful work from my friend
@kiranrpatil.bsky.social
. Gut bacteria can accumulate Forever chemicals and help us get rid of them! Happy we could contribute!
www.nature.com/articles/s41...
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Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances - Nature Microbiology
Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances (PFAS), commonly known as forever chemicals, in intracellular aggregates. Colonization of gnotobiotic mice with bioaccumulating bac...
https://www.nature.com/articles/s41564-025-02032-5
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Sjors Scheres
3 months ago
We have a 3-year funded postdoc position to work on structures of
#amyloid
filaments. If you are an expert in protein biochemistry, structural biology or
#cryoEM
/
#cryoET
, this could be for you! Feel free to email me with any questions. Come join us! ๐คฉ
www.nature.com/naturecareer...
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Postdoctoral Scientist - Structural Studies - Dr Sjors Scheres - LMB 2640 - Cambridgeshire job with MRC Laboratory of Molecular Biology (LMB) | 12840844
Postdoctoral Scientist Starting Salary: ยฃ41,344 Fixed term: 3 years MRC Laboratory of Molecular Biology, Cambridge, UK We are looking for a postdoc...
https://www.nature.com/naturecareers/job/12840844/postdoctoral-scientist-structural-studies-dr-sjors-scheres-lmb-2640/?LinkSource=PremiumListing
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Chemjobber
4 months ago
Biblically accurate nitrogen
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European Research Council (ERC)
4 months ago
๐ Congratulations to Wolfgang Baumeister
@maxplanck.de
, awarded the 2025
#ShawPrize
in Life Science & Medicine for pioneering work in cryo-ET! Learn more ๐
europa.eu/!JBXDBG
#FrontierResearch
#ERCSyG
#CryoET
#StructuralBiology
#shawprize2025
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ERC grantee wins the Shaw Prize in Life Science and Medicine
2025 Shaw Prize honours ERC-funded research in molecular imaging
https://europa.eu/!JBXDBG
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Martin Steinegger ๐บ๐ฆ
5 months ago
We've updated our AFESM website to now include biome filtering, allowing exploration of protein structures adapted to specific environments. ๐
afesm.foldseek.com
Read more about the work in the skeetorial ๐ฆ
bsky.app/profile/mart...
or our preprint ๐
www.biorxiv.org/content/10.1...
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Kelly Nguyen
6 months ago
We are looking for a postdoctoral fellow to join us to explore telomerase regulation by histones. Please get in touch if this may interest you.
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Felix Steinruecke
6 months ago
Iโm excited to share my first paper in the Farnung lab, in which we report four cryo-EM structures of the human DNA replication machinery engaging with and progressing into a nucleosome.
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BTO | British Trust for Ornithology
6 months ago
One of our satellite-tagged Cuckoos has hitched a ride on a cruise ship and is now in the UK, the earliest one of our superstar Cuckoos has ever reached us! ๐ฎ๐ฅ๏ธ๐งต
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Gerry Wright
6 months ago
The latest discovery from the lab and great colleagues at McMaster and U Illinois, Chicago. Lariocidin, a new lasso peptide antibiotic that inhibits the ribosome.
rdcu.be/efdha
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A broad-spectrum lasso peptide antibiotic targeting the bacterial ribosome
Nature - A new lasso peptide antibiotic exhibits broad-spectrum activity against Gram-negative and Gram-positive bacteria by interfering with bacterial protein synthesis, is unaffected by common...
https://rdcu.be/efdha
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Science Magazine
6 months ago
In a new Science study, cryoโelectron tomography captures the in-cell architecture of the mitochondrial respiratory chain, illuminating how the coordinated action of molecular machines drives lifeโs fundamental energy conversion. Learn more in this week's issue:
scim.ag/3FA3Ygq
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Jason, ex Inferis
7 months ago
โYou see, that was funny because no one could imagine one banana costing $10.โ
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Happy retirement to Francis Collins, a scientific and administrative hero. He was always a strong advocate for the importance of biological research and the results are obvious and impressive.
7 months ago
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IMP
8 months ago
Out of the lab, into the wild: when
@pauligroup.bsky.social
's Andi Pauli puts on her
@ox.ac.uk
blue, you know it's business time! Austria's national broadcast ORF interviewed her on how
#Vienna
has become such an amazing place for life science research.
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Martin Steinegger ๐บ๐ฆ
8 months ago
Foldseek-Multimerโnow published in
@naturemethods.bsky.social
โour fast multimer search tool, enables complex comparisons against the full PDB in seconds. It comes with BFMD, a collection of 300K+ predictions gathered from community projects. ๐
nature.com/articles/s41...
๐
search.foldseek.com
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Suyang Zhang
8 months ago
Ever wondered how Pol II speed is controlled during productive elongation? Our study reveals that the helicase RECQL5 triggers transcription braking, while the transcription-coupled DNA repair complex restores the elongation rate.
#cryoEM
#transcription
www.biorxiv.org/content/10.1...
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America's Lounge Singer
9 months ago
[werner herzog voice] the looney tunes are an abomination. the little bald man shoots the duck in the face but he lives. the coyote is crushed by many anvils, and yet he continues. these unnatural beings cannot die - and without death, what is the value of life itself?
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rahaeli
over 1 year ago
To everyone in a similar scenario: the tactic my doctor's office has taught me is to ask, in writing, for: 1) the name, board specialty, and license number of the doctor making the determination the treatment was not medically necessary;
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Haselbach Lab
10 months ago
We are very excited to share our recent preprint on the nuclear import mechanism of the proteasome, driven by the multivalent adaptor AKIRIN2!
www.biorxiv.org/content/10.1...
๐งต 1/6
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A multivalent adaptor mechanism drives the nuclear import of proteasomes
Nuclear protein homeostasis, including the turnover of transcription factors, critically depends on nuclear proteasomes. After each cell division, proteasomes need to be re-imported into the newly for...
https://www.biorxiv.org/content/10.1101/2024.11.08.622636v2
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Olivier Duss
10 months ago
First paper of our lab today
@natureportfolio.bsky.social
by Nussi! We provide a real-time movie on how
#transcription
and
#translation
cooperate using
#single-molecule
FM: we find long-range
#ribosome
/ RNAP communication mediated by
#RNA
looping!
@embl.org
#RNAbiology
#RNASky
t.co/a24Xxcxdo0
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Ed Sherer
10 months ago
Happy Helium Remembrance Day to all who celebrate!
#NMRChat
#ChemSky
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Oded Rechavi
10 months ago
Publishing the uncut blot
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Benjy Renton
10 months ago
The HPV vaccine has been recommended in the US since 2006. New study out today shows that cervical cancer deaths in young women in the years that followed have plummeted, decreasing 15% per year from 2013-2015.
jamanetwork.com/journals/jam...
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Cervical Cancer Mortality Among US Women Younger Than 25 Years
This study examines trends in cervical cancer mortality in US women aged younger than 25 years before and after the introduction of human papillomavirus vaccines.
https://jamanetwork.com/journals/jama/fullarticle/2827212
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Stephan Hacker
10 months ago
Interesting paper by the groups of Florian Stengel and @nadlerlab.bsky.social in ChemBioChem. They developed a new protein crosslinker based on the photoactivatable o-nitrobenzyl acetate reactive group, which leads to crosslinking of lysines for XL-MS. #ChemBio #Proteomics
chemistry-europe.onl...
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Alessandro Costa
10 months ago
Our article "MCM double hexamer loading visualized with human proteins" published in Nature today! โ๏ธ๐ฌ๐งฌ๐๐ฅณ Great collaboration with John Diffley's lab. Congratulations to Florian Weissmann, Julia Greiwe and all other authors!
rdcu.be/d1F7m
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Eugene Valkov
10 months ago
As a biochemist, I am continually surprised that people keep rediscovering that tags affect protein properties
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Sarah Manvel
11 months ago
So The Guardian is on here now and in its honour I am directing you all to the greatest British cultural analysis anyone has done lately
www.theguardian.com/news/2017/no...
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How the sandwich consumed Britain | The long read
The long read: The world-beating British sandwich industry isย worth ยฃ8bn a year. It transformed the way we eat lunch, then did the same for breakfast โ and now itโsย coming for dinner
https://www.theguardian.com/news/2017/nov/24/how-the-sandwich-consumed-britain
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Jordan Meier
11 months ago
Applications for the 2025 Bioorganic GRC are now live! Here is the link where you can check out the current line-up:
grc.org/bioorganic-c...
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Carter Lab
11 months ago
As my lab's first post on Bluesky. If you are a UK Structural Biologist please come to our one day meeting on Friday 6th December Lots of talk slots to be selected from abstracts. Deadline for abstracts is TOMORROW: Friday 15th Nov.
bit.ly/4fDEqfZ
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Worf Email
over 1 year ago
All crew, Again, please do not insert unknown USB drives from random planets into computer ports on the Enterprise. Worf
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SAVE THE DATE! We are bringing the Symposium for Structural Proteomics to Cambridge MA this October 28-30.
ssp2024.org
. Structural mass spec, cryoEM, comp. structure prediction, and more! Check out the lineup of confirmed speakers below.
over 1 year ago
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๐๐ฝ๐ฅ๐
about 2 years ago
Body goals
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