Ufuk Günesdogan
@guenesdoganlab.bsky.social
📤 151
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Developmental and Stem Cell Biology lab at the University of Goettingen
pinned post!
🚨Preprint alert!🚨 Great collaboration with the lab of Stefan Schoenfelder
@stefanschoenfelder.bsky.social
- we dissect the role of non-canonical enhancers in human pluripotent stem cells. 👇
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4 months ago
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Jesse Engreitz
4 days ago
New preprint from our lab! What can we learn about the properties of gene regulatory elements by CRISPR’ing a random set of accessible sites in human cells? Find out here:
www.biorxiv.org/content/10.1...
👇 1/
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5 days ago
Thrilled to share that our Group Leader Prof. Azim Surani, together with Prof. Davor Solter, has been awarded the 2026 Paul Ehrlich & Ludwig Darmstaedter Prize 🎉 for discovering genomic imprinting—a breakthrough that reshaped genetics and launched modern epigenetics.
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Akis (Argyris) Papantonis
13 days ago
Most read, I hear! Here is your chance to read what
@mariekeoudelaar.bsky.social
and I had in mind when writing this together.
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Mark Peifer (He, him)
about 1 month ago
The community of Drosophila researchers is amazing, mutually supportive and collaborative. Right now a key resource for our community,
@flybase.bsky.social
, is threatened by the cancellation of its NIH grant and is seeking community help in raising short term funds 1/n 🧪 please share
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Vallier Lab
about 1 month ago
So, we (Dylan Liabeuf and Anastasiia Maksiuk) are organising the first Berlin symposium on organoids. The objective is to bring together the Berlin organoid community and to develop further interactions. Info:
www.bihealth.org/en/notices/b...
Free registration:
www.bihealth.org/en/news/even...
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Berlin Organoid Symposium - News - BIH at Charité
The Berlin Organoid Symposium will highlight recent advances in the field, covering topics from fundamental organoid biology to translational applications. By uniting scientists from various instituti...
https://www.bihealth.org/en/notices/berlin-organoid-symposium
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Bluma Lesch
about 1 month ago
New paper on the role of H3K4me3 at enhancers! We (led by Haoming Yu) used dCas9 epigenome editing to add H3K4me3 to intergenic enhancers. This was (1) sufficient to turn up transcription at open, active regions and (2) has no effect on target gene transcription.
genesdev.cshlp.org/content/earl...
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H3K4me3 amplifies transcription at intergenic active regulatory elements
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
https://genesdev.cshlp.org/content/early/2025/08/18/gad.352841.125
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Ufuk Günesdogan
about 1 month ago
Excited to share our new study in
@cp-devcell.bsky.social
dissecting how the brain-associated transcription factor OTX2 drives anteriorization of the mammalian gut by enhancer remodeling using stem cell-based models.
#development
#enhancers
#patterning
#stemcells
www.cell.com/developmenta...
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Enhancer remodeling by OTX2 directs specification and patterning of mammalian definitive endoderm
Correct patterning of emerging tissues in the developing embryo is essential for the formation of functional organ systems. Using genetic tools for controlled protein depletion, Ee et al. identify the...
https://www.cell.com/developmental-cell/fulltext/S1534-5807%2825%2900496-4
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Schuh Lab
about 1 month ago
Great honor to be nominated as one of the top 10 Falling Walls Foundation Science Breakthroughs of the Year 2025 in the Life Sciences. A big thank you to
@ovarylab.bsky.social
&
@tabeamarx.bsky.social
for their outstanding contributions, & to everyone else who helped move this project forward.
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Rada-Iglesias Lab
about 1 month ago
Excited to share the latest work from the lab led by
@eharo84.bsky.social
, in which we have used synthetic biology to explore the mechanisms by which different types of long-range enhancers ensure robust and precise developmental gene expression
www.biorxiv.org/content/10.1...
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Synthetic engineering demonstrates that synergy among enhancers involves an increase in transcriptionally productive enhancer-gene contacts
Enhancers are non-coding cis-regulatory elements that control the expression of distally located genes in a tissue- and time-specific manner. Recent studies indicate that enhancers can differ in their...
https://www.biorxiv.org/content/10.1101/2025.08.08.669284v1
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Marta Shahbazi
about 1 month ago
🤩 Very excited to share our new work! We have derived euploid and aneuploid trophoblast organoids and extra-embryonic mesoderm cell lines from early human embryos. In doing so, we have characterised the tissue requirements for their specification. If you want to know more, continue reading….
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Sara Wickstrom
about 2 months ago
Check out this exciting meeting and register! Fantastic line-up of speakers on cell biology of the nucleus and a great venue 🔥
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Eileen Furlong
about 2 months ago
To all post-docs: The Genome Biology dept @embl.org has an Independent faculty position. Fantastic place to set up your lab –great package: core funding, fantastic Ph.D. students, cutting edge core facilities & great colleagues. Closing date Sept 19th
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
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Group Leader - Genome Biology Unit
Are you ready to lead groundbreaking research in Genome Biology? Join us at EMBL! We are seeking a motivated scientist to lead an independent research group addressing exciting and original biological...
https://embl.wd103.myworkdayjobs.com/en-US/EMBL/job/Group-Leader---Genome-Biology-Unit_JR2069
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Delighted to see this work published! Congrats to Chris Todd and everyone involved - happy to have been part of the team.
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about 2 months ago
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Development
2 months ago
Save the Date! Development has teamed up with the Wellcome-funded consortium the Human Developmental Biology Initiative to co-organise a meeting on
#HumanDevelopment
. 📅7 - 9 Sep 2026 📍University of Warwick, UK Register your interest for
#HumanDev26
:
www.biologists.com/meetings/dev...
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Ina Sonnen
2 months ago
Please pread the word. We have just launched the Hubrecht International PhD Program (HIPP). Are you looking for a PhD position in molecular and developmental biology or related subject in an international, very supportive and collaborative environment? Then apply to the HIPP!! 👇
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Virtual Gastrulation Zoom Talks
3 months ago
Join the VGZT Eastern KEYNOTE lecture ☀️☕ TOMORROW 🗓️ Wednesday July 09 ⏰ 13:30 IST / 17:00 JST / 8:00 UTC / 10:00 CET Featuring: 1) Maithreyi Narasimha 👉Positioning tissues during Drosophila morphogenesis Jose Silva
@josesilvalab.bsky.social
👉From founder cells to organogenesis-stage embryo model
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German Stem Cell Network GSCN
3 months ago
GSCN Conference (15. - 17. Oct 2025 in Munich)! Extended Deadline: 21 July 2025. Submit your abstract for an oral presentation & get an early bird ticket by 21.7.! Save on registration and secure your spot in the scientific program. Register and submit your abstract here: ➙
gscn-conferences.org
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Evgeny Kvon
3 months ago
Our paper describing the Range Extender element which is required and sufficient for long-range enhancer activation at the Shh locus is now available at
@nature.com
. Congrats to
@gracebower.bsky.social
who led the study. Below is a brief summary of the main findings
www.nature.com/articles/s41...
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Range extender mediates long-distance enhancer activity - Nature
The REX element is associated with long-range enhancer–promoter interactions.
https://www.nature.com/articles/s41586-025-09221-6
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Aydan Bulut-Karslioglu
3 months ago
⚠️ I am really excited to share the work of Anastasios Balaskas, an excellent PhD candidate in the lab, with the wider world. Tasos made a significant advance: generating a stem cell-based embryo model that contains both posterior and anterior neural tissues of the late-stage gastrulating embryo.
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Ufuk Günesdogan
3 months ago
🌟Congratulations to Azim Surani
@gurdoninstitute.bsky.social
@cam.ac.uk
for receiving the 2025 Kyoto Prize - Basic Sciences. Azim's research fundamentally advanced our understanding of developmental biology🔬🧬
www.gurdon.cam.ac.uk/kyoto-prize-...
#KyotoPrize
#AzimSurani
#DevelopmentalBiology
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Rob Schneider
3 months ago
Our review on ➡️"Histone modifications in development" is out 🍾 in 🔖 Development
@dev-journal.bsky.social
urnal.bsky.social
Read more about histone tail and globular domain modifications during development:
journals.biologists.com/dev/article/
...
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Akis (Argyris) Papantonis
3 months ago
This is a piece that I and
@karsten-rippe.bsky.social
discussing a lot, and a topic that is very close to my heart. The editors
@naturerevgenet.bsky.social
gave us the stage to do so, and the final version of our review is now available under this link:
rdcu.be/erP1u
A short thread follows 1/n
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Axel Visel
3 months ago
Textbooks: “Enhancers are just a bunch of TFBSs” But how do they REALLY work? New paper with many contributors here
@berkeleylab.lbl.gov
,
@anshulkundaje.bsky.social
,
@anusri.bsky.social
A 🧵 (1/n) Free access link:
rdcu.be/erD22
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FragileNucleosome
3 months ago
Join us next Wed, for three amazing ECR researchers_
@fueyoraquel.bsky.social
,
@kaiamattioli.bsky.social
and Laura talk about their work in
#FragileNucleosome
seminar series! In case you haven't joined any of the previous 2025 sessions, here is registration link:
us06web.zoom.us/webinar/regi...
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Alex Gould Lab
4 months ago
Calling all European
#Drosophila
labs. Time for all of us, that are able, to step up to support FlyBase during this funding crisis.
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Stefan Schoenfelder
4 months ago
Really looking forward to
@radaiglesiaslab.bsky.social
's talk on "Gaining mechanistic insights into long-range gene regulation through synthetic biology approaches" in
@enhancedgenomics.bsky.social
's seminar series. 📅 June 5th 2025 tomorrow ⏰ 4pm GMT Please join us:
us02web.zoom.us/webinar/regi...
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Welcome! You are invited to join a webinar: The 3D Regulatory Genome: Gaining mechanistic insights into long-range gene regulation through synthetic biology approaches. After registering, you will rec...
Join our guest speaker, Dr. Alvaro Rada-Iglesias, in this exciting seminar on the 3D Regulatory Genome, sponsored by Enhanced Genomics.
https://us02web.zoom.us/webinar/register/WN_gWVjd-_WQn6Mxbz993RgtA#/registration
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Antoine Zalc
4 months ago
www.nature.com/articles/s41...
Dev bio is amazing !!
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Maternal iron deficiency causes male-to-female sex reversal in mouse embryos - Nature
Iron-deficient conditions in pregnant mice can cause XY mouse embryos to develop female rather than male genitalia, revealing that iron metabolism has a role in determining male sex in mice.
https://www.nature.com/articles/s41586-025-09063-2
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Stefano Arfè
4 months ago
🔬✨ Excited to share a major milestone from my PhD research at Institut Curie, where I am a first author in a recently published paper in Nature Communications!
www.nature.com/articles/s41...
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H3.3 deposition counteracts the replication-dependent enrichment of H3.1 at chromocenters in embryonic stem cells - Nature Communications
In mammals, two major non-centromeric histone H3 (H3.1/2 and H3.3) variants, display distinct nuclear distribution patterns across the genome and use distinct deposition pathways. Here the authors rev...
https://www.nature.com/articles/s41467-025-60430-z
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🚨Preprint alert!🚨 Great collaboration with the lab of Stefan Schoenfelder
@stefanschoenfelder.bsky.social
- we dissect the role of non-canonical enhancers in human pluripotent stem cells. 👇
add a skeleton here at some point
4 months ago
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Daniel Ibrahim
4 months ago
How to find Evolutionary Conserved Enhancers in 2025? 🐣-🐭 Check out our paper - fresh off the press!!! We find widespread functional conservation of enhancers in absence of sequence homology Including: a bioinformatic tool to map sequence-diverged enhancers!
rdcu.be/enVDN
github.com/tobiaszehnde...
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Conservation of regulatory elements with highly diverged sequences across large evolutionary distances
Nature Genetics - Combining functional genomic data from mouse and chicken with a synteny-based strategy identifies positionally conserved cis-regulatory elements in the absence of direct sequence...
https://rdcu.be/enVDN
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Joanna W Jachowicz
6 months ago
Join our team as a postdoc and explore the exciting world of transposable elements and developmental biology with us!
@imbavienna.bsky.social
@vbcscitraining.bsky.social
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Come and join us if you are in Münster on Thursday!
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6 months ago
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Akis (Argyris) Papantonis
6 months ago
Tomorrow — for anyone in the Frankfurt area that might be interested in 3D genome folding, cell aging and splicing.
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EMBL Events
7 months ago
📢 Have you registered for 'Gene regulation: one molecule at a time' yet? Submit your abstract by 8 April! 👉🏼
s.embl.org/grg25-01-bl
#EMBLSingleMolecule
will bring together single molecule genomics and imaging to study mechanisms across the central dogma at molecular resolution 🧬🔍
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Pradeepa Madapura
7 months ago
Check out this preprint on MLL2 by Srinjan Basu's lab
@srinjan.bsky.social
; I am happy to contribute a bit to this tour de force work
www.biorxiv.org/content/10.1...
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🚨Exciting lecture alert!🚨 If you're in Göttingen on Feb 19 at 1:15 PM, don’t miss this year’s Ernst Caspari Lecture by Meritxell Huch
@merihuchlab.bsky.social
from MPI Dresden
@mpicbg.bsky.social
- join us for an inspiring talk!
7 months ago
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Axel Visel
8 months ago
2025 EMBO workshop on "Enhancer Mechanics and Enhanceropathies" now open for registration I was at the 2023 workshop in Marseille and it was a great event - recommend!
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EMBL Events
8 months ago
Does your research focus on chromatin and epigenetics? Then join
#EMBLChromatin
🙌 Don't miss the opportunity to connect with experts and be part of the conversation! 🗓️ 13 – 16 May 2025 📍 EMBL Heidelberg and Virtual 📩 Submit your abstract by 18 February 2025 ➡️
s.embl.org/chr25-01-bl
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Akis (Argyris) Papantonis
8 months ago
Hear, hear! The Universtiy Medical Center Goettingen is inviting applications to its new Medical Scientist Program “Genomic responses to disease plasticity” funded by the EKF Stiftung. The program will support early-career bioscientists with a PhD eager to do clinically-oriented research... 1/n
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Yan Hu
8 months ago
Super excited to share our new study from the
@jbuenrostro.bsky.social
Lab in
@nature.com
! We developed a computational method for tracking transcription factor and nucleosome binding using single-cell ATAC-seq and deep learning. Paper:
www.nature.com/articles/s41...
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Multiscale footprints reveal the organization of cis-regulatory elements - Nature
We developed PRINT, a computational method that identifies footprints of DNA–protein interactions from bulk and single-cell chromatin accessibility data across multiple scales of protein size.
https://www.nature.com/articles/s41586-024-08443-4
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Maud Borensztein
8 months ago
I am thrilled to share our latest work, released today 🤩
www-nature-com.insb.bib.cnrs.fr/articles/s41...
It results from years of hard work by the team and long-time collaborators, with special thanks to PhD student Clara Roidor and collaborator Laurène Syx.
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Graziano Martello
8 months ago
With pleasure we share our preprint reporting robust and cost-effective expansion of naive human Pluripotent Stem Cells without feeder cells. A fantastic collaborative effort with
@leeboratory.bsky.social
@jzylicz.bsky.social
@pasquelab.bsky.social
and Nicolas Rivron.
tinyurl.com/5n6z9rt9
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