Kyojiro N Ikeda
@beingkyo.bsky.social
📤 1008
📥 1554
📝 10
Submicron morphogenesis Senior postdoc at University of Vienna
@univie.ac.at
reposted by
Kyojiro N Ikeda
Anubhav Dhar
about 1 year ago
🚨 New preprint alert! We used IntAct + Ultrastructure Expansion microscopy to map actin isoforms in 3D🤯 Check out this gorgeous 3D volume of U2OS cells - revealing diverse filament networks including the elusive nuclear actin filaments!
#cytoskeleton
#microscopy
#actin
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Annika Barber
13 days ago
Is it pronounced ORCID 🌸 like the flower or Orc ID 👹 like an identity card for a Middle Earth monster? Smart people disagree. Personally, I pronounce it Orc ID because I like the idea that I am a science goblin with a fixed numerical identifier.
@orcid.org
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Kyojiro N Ikeda
Tessmar-Raible Labs
19 days ago
Massive protests now in
@wien.gv.at
now against planned budged cuts of the
#University
sector.
#unisretten
. Speeches now in front of
@univie.ac.at
main building.
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Wallace Marshall
about 1 month ago
so maybe this protein is acting as a calcium sensor to let the cell keep track of its current stimulation state or past stimulus history. right now, almost any hypothesis can be on the table. in case you missed the paper you can read it here:
www.cell.com/current-biol...
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Molecular pathways for learning in the single-cell Stentor coeruleus
Rajan et al. explore the molecular basis of habituation in the unicellular organism Stentor coeruleus using a combination of pharmacological methods, proteomics, transcriptomics, and RNAi. These exper...
https://www.cell.com/current-biology/fulltext/S0960-9822(26)00428-8
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Kyojiro N Ikeda
about 1 month ago
elifesciences.org/reviewed-pre...
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Actin-membrane interface stress regulates Arp2/3-branched actin density during lamellipodial protrusion
https://elifesciences.org/reviewed-preprints/111081
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Kyojiro N Ikeda
Maureen Barr
2 months ago
Another
#cilia
kinesin motor: kinesin-8 KIF19A localizes to ciliary tips of Drosophila mechanosensory neurons In 2012, Hirokawa lab showed KIF19A regulated ciliary length & localized to ciliary tips in mice; knockouts had hydrocephalus and female infertility phenotypes (PMID 23168168).
#ciliopathy
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Kyojiro N Ikeda
Journal of Cell Biology
2 months ago
Park, Liu, Sun, Roll-Mecak et al. present the crystal structure of an RPGR–TTLL5 co-complex, which reveals TTLL recognition paradigms for non-tubulin substrates and sheds light on disease mechanism for retinal dystrophies caused by TTLL5 and RPGR mutations.
rupress.org/jcb/article/...
#Cilia
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Kyojiro N Ikeda
Cell - a Cell Press journal
3 months ago
Now online! Deciphering mechanical determinants of morphological evolution
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Deciphering mechanical determinants of morphological evolution
A comparative analysis of cnidarian larval morphogenesis combined with active surface theory identifies a set of mesoscale mechanical modules that predict species-specific shapes. Manipulating these modules reprograms morphology, revealing how variation in tissue-scale mechanics underlies morphological diversity.
http://dlvr.it/TRc1kn
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Kyojiro N Ikeda
Journal of Cell Biology
5 months ago
🎦 See a short video summary by Sachi Inagaki:
youtu.be/50JRPysrTNU
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Endoplasmic reticulum patterns insect cuticle nanostructure
Original paper: [LINK] Video Summary by Sachi Inagaki (RIKEN Center for Biosystems Dynamics Research, Kobe, Japan) Description: In this work, Inagaki and coworkers report the intracellular mechanism…
https://youtu.be/50JRPysrTNU
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Kyojiro N Ikeda
Journal of Cell Biology
5 months ago
How do cells fabricate nanoscale extracellular matrix structures? Inagaki, Hayashi et al.
@riken-bdr.bsky.social
show that the ER network stimulates complex remodeling of the plasma membrane, thereby patterning nanoscale cuticular pore formation in insect sensilla.
rupress.org/jcb/article/...
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Kyojiro N Ikeda
Journal of Cell Biology
5 months ago
Medina, Chang et al. of the
@nanigrotjahn.bsky.social
lab introduce a new method based on the Surface Morphometrics pipeline to measure global and local thicknesses of organellar
#membranes
from cellular cryo-electron tomography data.
rupress.org/jcb/article/...
#CryoET
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Kyojiro N Ikeda
Nature
6 months ago
Demogorgons, Shadow Monsters and psychokinetically gifted 12-year-olds are strictly fictional creations - but what about the parallel universe at the core of Stranger Things?
go.nature.com/48Mo2br
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Are we living in a parallel universe? The strange physics of Stranger Things
Nature - Nature speaks to theoretical physicists to explore the real theories that inspired the hit series. Warning: contains spoilers.
https://go.nature.com/48Mo2br
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www.cell.com/biophysj/abs...
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Membrane morphologies arising from multiconformational protein states
Dynamic compartmentalization by lipid membranes is a hallmark of living cells. The shapes of membrane surfaces are tightly coupled to their various functions, resulting in the myriad of complex membra...
https://www.cell.com/biophysj/abstract/S0006-3495(25)00563-6?dgcid=raven_jbs_etoc_email
7 months ago
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Kyojiro N Ikeda
Pilhofer Lab 🦠❄️🔬
8 months ago
Congrats🥳 to
@mike-wieczorek.bsky.social
, Bin Cai, and our former lab member Jingwei Xu
@xujwet.bsky.social
to their multiscale imaging 🔬 story of the centriolar AC linker
#teamtomo
www.science.org/doi/10.1126/...
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Structure and assembly of the A-C linker connecting microtubule triplets in centrioles
Multiscale cryo-EM of centrioles reveals the structure and polymorphism of the A-C linker connecting microtubule triplets.
https://www.science.org/doi/10.1126/sciadv.ady3689
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Kyojiro N Ikeda
Manuel Thery
8 months ago
What would happen if cells would express more molecular motors ? They would break all microtubules 😱 As shown by recent great work from
@kjverhey1.bsky.social
rupress.org/jcb/article-...
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Thibaut Brunet
8 months ago
Latest from ours:
www.cell.com/cell-reports...
This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
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Ben Engel
9 months ago
A molecular-resolution look into the near-native architecture of the spinach chloroplast🌱. This one was a long time in the oven, but we're happy to finally share our "version of record". What long-standing debates did we settle? Check back for a short thread🧵 on Monday.
#TeamTomo
#PlantScience
🧪🧶🧬🔬🌾
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Laura Boulan
10 months ago
Our new paper is out in
@currentbiology.bsky.social
! Using 3D reconstructions and volume measurements in Drosophila wing primordia, we show that growth can be uncoupled from cell proliferation and uncover a new time window for growth arrest. With
@leopoldlab.bsky.social
www.cell.com/current-biol...
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A switch to non-proliferative growth sustains Drosophila wing development during the early pupal stage
Using precise tissue volume quantification, El Marzkioui, Gaugué, et al. show that wing primordia continue to grow during the early pupal stage, a phase of increased cell volume driven by insulin/IGF ...
https://www.cell.com/current-biology/fulltext/S0960-9822(25)00886-3
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Out stody Is now on National Geographic!!!
www.nationalgeographic.com/animals/arti...
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This creature can 3D-print its own body parts
Bristle worms have protrusions that act like a 3D printer, helping us to understand how cells regenerate.
https://www.nationalgeographic.com/animals/article/bristle-worm-3d
10 months ago
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Kyojiro N Ikeda
José Dinneny
11 months ago
Very proud to share our latest preprint: postdoc/LRSF fellow Yue Rui studies the mechanisms regulating attachment of the cell wall to the plasma membrane. The Cellulose Synthase Complex and REMORINs determine the extent of attachment and root osmotic stress tolerance.
www.biorxiv.org/content/10.1...
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Kyojiro N Ikeda
Bruce Taylor
about 1 year ago
An amoeba with teeth. When building its shell, Netzelia corona selects sharp grains of quartz and positions them around its aperture with the tips pointing inward. I took a few closeups, yesterday.
#ProtistsonSky
#amoebae
#peatlands
#MEvoSky
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Kyojiro N Ikeda
eLife
11 months ago
One protein, two opposing roles: This ‘compelling’ study shows how the same signalling molecule can drive either protrusion or retraction in migrating cells depending on its concentration and activation dynamics.
elifesciences.org/articles/931...
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Kyojiro N Ikeda
Journal of Cell Biology
about 1 year ago
Belyantseva and Liu et al. report that taperin encircles and stabilizes F-#actin at auditory hair cell
#stereocilia
bases and bundles F-actin. Taperin deficiency causes stereocilia disassembly, rootlet breakage at pivots, and other abnormalities culminating in deafness.
rupress.org/jcb/article/...
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I can say that I lived in the times of CRISPR. -
@jenniferdoudna.bsky.social
's talk at
@gmivienna.bsky.social
25th year anniversary jubilee at ÖAW.
about 1 year ago
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Kyojiro N Ikeda
Alex Eve
about 1 year ago
#DevBio
job opportunity! Development (
@dev-journal.bsky.social
) is looking for a new Community Manager to run our community site, the Node (
@the-node.bsky.social
) – a great opportunity if you love devbio,
#stemcells
,
#scicom
and community engagement. Happy to chat informally about the role. ⬇️
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Work for us
Working for us We’re always looking for talented and motivated people to work as part of our close-knit team. Roles range from editorial to production, marketing to event co-ordination, HR to accounts...
https://www.biologists.com/about-us/work-for-us/
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Kyojiro N Ikeda
Pablo Arantes
about 1 year ago
I’ve just updated the BioEmu notebook to include the powerful LogMD. Now, you can generate equilibrium ensembles and explore the full ensemble directly in the notebook. A huge thanks to Alexander Mathiasen for the support! 🙌 🔗 Try it on Google Colab:
lnkd.in/gcuqd-fT
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Kyojiro N Ikeda
Tessmar-Raible Labs
about 1 year ago
Kyojiro Ikeda
@beingkyo.bsky.social
@univie.ac.at
presenting now at
#DevStem2025
@viennabiocenter.bsky.social
on first mechanistic & molecular regulators of
#bristle
biogenesis in the
#Platynereis
model. Also check Kyojiro's recent
@naturecomms.bsky.social
publication
www.nature.com/articles/s41...
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Kyojiro N Ikeda
Tessmar-Raible Labs
about 1 year ago
Are you in for a PhD project on neural
#regeneration
? Only 2 more weeks to apply to the
@vbcscitraining.bsky.social
@univie.ac.at
VBC PhD programme:
vbcphd.at
! Pls. see
tiny.cc/RaibleLab
and our recent
@naturecomms.bsky.social
study
www.nature.com/articles/s41...
for information and contact!
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Kyojiro N Ikeda
Universität Wien / University of Vienna
about 1 year ago
Take the next step in your academic career and become part of a thriving international research community! The Vienna Doctoral School of Pharmaceutical, Nutritional and Sport Sciences (VDS-PhaNuSpo) are offering 13 fully four-year funded PhD positions at the moment!
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Open positions
Open positions
https://vds-phanuspo.univie.ac.at/application/open-positions/
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Kyojiro N Ikeda
Zach Marin
about 1 year ago
Incredible 4Pi and pan-expansion imaging of the Golgi 👇
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Kyojiro N Ikeda
Ben Engel
about 1 year ago
We're on the cover of
@science.org
this week. Awesome work by
@florentwaltz.bsky.social
.
#CryoET
is reaching crazy resolutions inside cells, and this is just the beginning. Fantastic interpretation of the proton motive force by
@verenaresch.bsky.social
. Always a pleasure making
#SciArt
with you!🧪🧶🧬🌾
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Kyojiro N Ikeda
Nature
about 1 year ago
Nature research paper: Dynamic cytoskeletal regulation of cell shape supports resilience of lymphatic endothelium
https://go.nature.com/4hrHX0v
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Dynamic cytoskeletal regulation of cell shape supports resilience of lymphatic endothelium - Nature
Dynamic cytoskeletal regulation of lymphatic endothelial cell shape, induced by isotropic stretch and crucial for dermal lymphatic capillary function, is identified and found to result from continuous remodelling of cellular overlaps that maintain vessel integrity.
https://go.nature.com/4hrHX0v
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Kyojiro N Ikeda
Hao Yin
over 1 year ago
My continued biological education
#Mechanobiology
#RigiditySensing
Stiffness Sensing by Cells "Substrate Stiffness Can Lead to Heritable Epigenetic Changes" "Cell Motility Is Faster on Soft Elastic Substrates"
#PhysiolRev
2020
journals.physiology.org/doi/full/10....
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Kyojiro N Ikeda
Matthias Soller
over 1 year ago
Cool story on nanopatters! We had picked Osiris genes as erect wing regulated, but no clue what this was about.
genomebiology.biomedcentral.com/articles/10....
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Kyojiro N Ikeda
Julian Kompa
over 1 year ago
Can you spot the difference? 🔬 SiR-actin labeling can be cytotoxic and affects actin dynamics - while the new XActin probes do not! Developed by
@veselin-nasufovic.bsky.social
and perfect for time-resolved and STED imaging without the need for genetic manipulation.
www.biorxiv.org/content/10.1...
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Kyojiro N Ikeda
Saravanan Palani
over 1 year ago
First Post! Thrilled to share our lab's first evolutionary cytoskeleton study! We uncover two distinct FtsZ paralogs in Odinarchaeota OdinFtsZ1 forms curved filaments, while OdinFtsZ2 assembles into spiral rings. A glimpse into tubulin evolution! threads👇
#Eukaryogenesis
#AsgardArchaea
#cytoskeleton
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Kyojiro N Ikeda
Tessmar-Raible Labs
over 1 year ago
Huge congrats to Nadja Milivojev
@vbcscitraining.bsky.social
who successfully defended her
@univie.ac.at
PhD thesis with a brilliant presentation today. Thanks to examiners Elly Tanaka, Michael
@mikebok.bsky.social
and Roger Revilla, and both labs for wonderful support!
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Kyojiro N Ikeda
André Nadler
over 1 year ago
It’s incredibly hard to study lipids in biological membranes on the nanoscale. You need near-perfect information on both membrane ultrastructure and lipid density, which usually isn’t attainable. Lipid-CLEM brought to you by
@mathilda95.bsky.social
changes that.
www.biorxiv.org/content/10.1...
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Dezene Huber 🍁 🌻
over 1 year ago
Cicadas have little, bendy micro-pillars on their wings that pierce bacterial membranes and are as effective at killing microbes as a bleach solution. It might be possible to mimic this effect for use in medical (etc.) equipment. 🪳🪲🧪
www.science.org/content/arti...
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Microscopic pillars on insect wings give bugs an antibacterial superpower
New insights into how these “nanopillars” work could inspire better ways to protect humans from infection
https://www.science.org/content/article/microscopic-pillars-insect-wings-give-bugs-antibacterial-superpower
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Kyojiro N Ikeda
Tessmar-Raible Labs
over 1 year ago
#SYStem2025
:: Vienna, March 12-14 ::
#StemCell
niches | Deterministic v. stochastic decisions | Germline | Stem cell model systems |
#Epigenetics
& imprinting | Cell biology of Stem Cells | Transitioning Stem Cells into the clinic; For oral presentations, register by Jan 15!
www.sy-stem.org
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Kyojiro N Ikeda
Marc Somssich
over 1 year ago
📜 A cellulose synthase–like protein governs the biosynthesis of Solanum alkaloids 🧑🔬 Adam Jozwiak, Asaph Aharoni, et al. 📔
@science.org
🔗
www.science.org/doi/10.1126/...
#️⃣
#PlantScience
#PlantImmunity
#PlantMetabolites
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A cellulose synthase–like protein governs the biosynthesis of Solanum alkaloids
Decades of research on the infamous antinutritional steroidal glycoalkaloids (SGAs) in Solanaceae plants have provided deep insights into their metabolism and roles. However, engineering SGAs in heter...
https://www.science.org/doi/10.1126/science.adq5721
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Kyojiro N Ikeda
Tessmar-Raible Labs
over 1 year ago
Great start into academic 2025 with an excellent
@univie.ac.at
MSc thesis defense by
@murielmirus.bsky.social
. Kudos to
@beingkyo.bsky.social
for great supervision, many thanks to Stephanie Ellis and Roger Revilla for joining the panel, and the entire lab for support and presents. Well done Muriel!
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Kyojiro N Ikeda
Christian Frezza
over 1 year ago
Mitochondria- and ER-associated actin are required for mitochondrial fusion - Nature Communications congrats
@manorlaboratory.bsky.social
& CO
www.nature.com/articles/s41...
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Mitochondria- and ER-associated actin are required for mitochondrial fusion - Nature Communications
The actin cytoskeleton is crucial for cell and organelle motility. Here, the authors show that actin acts upstream of the mitochondrial fusion machinery to bridge two fusing mitochondria.
https://www.nature.com/articles/s41467-024-55758-x
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Kyojiro N Ikeda
Hanieh Falahati
over 1 year ago
This
#EM_Monday
highlights how organelles can shape cells in 🧠! E.g. glia, with their thin processes, often wrap around neurons. But when organelles like lipid droplets (LDs) are present, they can create dents in neighboring neurons—like the one shown here, where a glial LD indents neurons' somas🧵
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Wallace Marshall
over 1 year ago
Mitochondria consist of networks of cylindrical tubes, right? Not necessarily! - in our new preprint,
@gavsturm.bsky.social
investigates how mitochondria transiently adopt a beads-on-a-string morphology
www.biorxiv.org/content/10.1...
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Kyojiro N Ikeda
Kirsty Wan
over 1 year ago
Did you know
#diatoms
are motile? These tiny glass cells have no cilia or flagella and a rigid body yet can glide on surfaces using a specialised slit in the cell wall called the raphe! What is the functional morphology of the raphe? All revealed in our new preprint
www.biorxiv.org/content/10.1...
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Wallace Marshall
over 1 year ago
Where does pattern come from inside cells? in this revised preprint,
@aralbright.bsky.social
Shows that regionalization of mRNA in a Stentor cell depends on dynein motors and the microtubule cytoskeleton
doi.org/10.1101/2023...
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Manuel Thery
over 1 year ago
Mix two motors of opposite polarity with microtubules and they will partition space ! Microtubules will get organized in polar and active barriers, sorting the two motors in separated domains, leading to the emergence of a new type of patterns.
#morphogenesis
doi.org/10.1073/pnas...
(1/n)
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Kyojiro N Ikeda
Sebastiaan van Heesch
over 1 year ago
Science Magazine wrote a news article about our latest preprint, featuring
@johnprensner.bsky.social
@thomasmartinez.bsky.social
Alan Saghatelian, Ji-Young Youn, Ami Bhatt, Jon Mudge, and more:
www.science.org/content/arti...
Preprint:
www.biorxiv.org/content/10.1...
🔎microproteins
#darkproteome
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‘Dark proteome’ survey reveals thousands of new human genes
Database confirms that overlooked segments of the genome code for a multitude of tiny proteins
https://www.science.org/content/article/dark-proteome-survey-reveals-thousands-new-human-genes
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Kyojiro N Ikeda
Carolyn Bertozzi
over 1 year ago
Respect/beware of His tags
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