Craig Anderson
@craigandersn.bsky.social
📤 141
📥 179
📝 76
Interested in DNA damage, mutations, adaptation and evolution.
reposted by
Craig Anderson
Institute of Genetics and Cancer
11 days ago
Congratulations to Martin Taylor for being shortlisted in this year’s
#CancerGrandChallenges
! The CAUSE team will now compete for the chance to receive up to £20m to make radical progress against cancer’s toughest challenges:
bit.ly/41KM1DS
@cancergrand.bsky.social
@cmvm-edinburghuni.bsky.social
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Craig Anderson
Nature Genetics
20 days ago
📢OUT
@natgenet.nature.com
📰DNA methylation cooperates with genomic alterations during non-small cell lung cancer evolution. By Francisco Gimeno-Valiente, Nnennaya Kanu and colleagues. ⬇️
www.nature.com/articles/s41...
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DNA methylation cooperates with genomic alterations during non-small cell lung cancer evolution - Nature Genetics
Integrated multi-omic analyses using samples from the TRACERx study highlight cross-talk between DNA hypermethylation and genomic lesions in non-small cell lung cancer.
https://www.nature.com/articles/s41588-025-02307-x?utm_source=bluesky&utm_medium=social&utm_campaign=ng
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reposted by
Craig Anderson
Molly Przeworski
about 1 month ago
In these dark times, it comes as a rare pleasure to highlight
@natanaels.bsky.social
&
@marcdemanuel.bsky.social
's work on germline and somatic mutations in humans. 1/n
www.biorxiv.org/cgi/content/...
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Collateral mutagenesis funnels multiple sources of DNA damage into a ubiquitous mutational signature
Mutations reflect the net effects of myriad types of damage, replication errors, and repair mechanisms, and thus are expected to differ across cell types with distinct exposures to mutagens, division ...
https://www.biorxiv.org/cgi/content/short/2025.08.28.672844v1
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reposted by
Craig Anderson
Liana Lareau
about 2 months ago
This preprint from Helen Sakharova is one of the coolest things to come out of my lab: “Protein language models reveal evolutionary constraints on synonymous codon choice.” Codon choice is a big puzzle in how information is encoded in genomes, and we have a new angle.
www.biorxiv.org/content/10.1...
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Protein language models reveal evolutionary constraints on synonymous codon choice
Evolution has shaped the genetic code, with subtle pressures leading to preferences for some synonymous codons over others. Codons are translated at different speeds by the ribosome, imposing constrai...
https://www.biorxiv.org/content/10.1101/2025.08.05.668603
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reposted by
Craig Anderson
about 1 month ago
An innovative and fascinating sequencing tech detects DNA changes before they lock in as mutations... offering fresh insight into cancer, aging, & genetic disease. Explore the science behind it:
www.biorxiv.org/content/10.1...
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Single-strand mismatch and damage patterns revealed by single-molecule DNA sequencing
Mutations accumulate in the genome of every cell of the body throughout life, causing cancer and other genetic diseases[1][1]-[4][2]. Almost all of these mosaic mutations begin as nucleotide mismatche...
https://www.biorxiv.org/content/10.1101/2023.02.19.526140v1.full
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reposted by
Craig Anderson
Duxin lab
about 1 month ago
It is not always safe to repair DNA Damage. Sometimes, cells "just bypass it". During DNA replication, repair of lesions on DNA can be dangerous. Cells instead "tolerate" DNA damage and focus on finishing replication. Read our review and find out why and how:
doi.org/10.1016/j.ti...
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reposted by
Craig Anderson
Benjamin Schuster-Böckler
about 2 months ago
New paper out today in
@science.org
! Very proud that my team was able to contribute to this fantastic work from
@bethpsaila.bsky.social
's group. In short: platelets contain a fair amount of cfDNA taken up from the surrounding! Read the summary by lead author
@l-cmurphy.bsky.social
:
add a skeleton here at some point
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Would you like to do some unique experiments in cancer genomics and mutagenesis, in beautiful Munich? Well then apply for this PhD position:
jobs.dkfz.de/en/jobs/1679...
You'll learn a lot and it'll be fun and interesting!
#DKTK
@dkfz.bsky.social
@lmumuenchen.bsky.social
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PhD Student in Mutational Processes Driving Somatic Evolution
https://jobs.dkfz.de/en/jobs/167996/phd-student-in-mutational-processes-driving-somatic-evolution
about 2 months ago
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reposted by
Craig Anderson
Nuria Lopez-Bigas
about 2 months ago
New paper from our lab - @bbglab.bsky.social. Oncodrive3D: fast and accurate detection of structural clusters of somatic mutations under positive selection
academic.oup.com/nar/article/...
Kudos to Stefano, Olivia,
@fmuinos.bsky.social
and Abel
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Oncodrive3D: fast and accurate detection of structural clusters of somatic mutations under positive selection
Abstract. Identifying the genes capable of driving tumorigenesis in different tissues is one of the central goals of cancer genomics. Computational methods
https://academic.oup.com/nar/article/53/15/gkaf776/8234003
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reposted by
Craig Anderson
Barbara Marte
about 2 months ago
new out in Nature yesterday
www.nature.com/articles/s41...
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Clone copy number diversity is linked to survival in lung cancer - Nature
A study presents ALPACA, a computational method for inferring clone- and allele-specific copy numbers of individual clones from multi-sample bulk DNA-sequencing data, and demonstrates its use to study...
https://www.nature.com/articles/s41586-025-09398-w
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reposted by
Craig Anderson
Luijsterburglab
2 months ago
Dive into the step-by-step choreography of transcription-coupled DNA repair. In our new review published in Nature Cell Biology, we explore what we know and what’s next in this exciting field of research!
www.nature.com/articles/s41...
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The molecular basis of human transcription-coupled DNA repair - Nature Cell Biology
This Review discusses transcription-coupled DNA repair in response to the stalling of RNA polymerase II on different types of DNA lesions and highlights the molecular details for the different steps i...
https://www.nature.com/articles/s41556-025-01715-9
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reposted by
Craig Anderson
Vladimir (Vova) Seplyarskiy
4 months ago
🚨 Looking for postdocs! I'm starting my lab at UT Southwestern this September. If you're interested in: 🧬 Somatic & germline mutagenesis 🐭 Evolution of mutation processes 🧠 Adjacent areas like Mendelian genomics & population genetics—please consider joining. Formal ad coming soon. DM me!
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Today is my last day at the
@uoe-igc.bsky.social
in Edinburgh, as I'm starting my own lab in Munich as part of the German Cancer Consortium (DKTK), DKFZ and the LMU. I'll continue to focus on DNA damage and mutagenesis to determine their role in somatic evolution and disease.
3 months ago
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reposted by
Craig Anderson
Anton Goloborodko
3 months ago
We found a new asymmetry in the large-scale chromosome structure: sister chromatids are systematically shifted by hundreds of kb in the 5′→3′ direction of their inherited strands! The work was led by Flavia Corsi, in close collaboration with the Daniel Gerlich lab.
www.biorxiv.org/content/10.1...
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reposted by
Craig Anderson
Jamie Blundell
3 months ago
Delighted to share our latest on longitudinal methylation dynamics preceding cancer. Epigenetic signs of AML appear in blood DECADES before Dx. 👉 Early cancer detection 👉 Methylation drivers 👉 Epimutation rates 👉 CpG lineage tracing
www.biorxiv.org/content/10.1...
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reposted by
Craig Anderson
Tim Coorens
3 months ago
Last but not least, if you're interested in somatic mutations, new technologies and computational genomics - we're hiring a postdoc in my brand new lab
@emblebi.bsky.social
! Reach out if interested or you have any questions, and apply here:
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
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Postdoctoral Fellow in Coorens Group
We are looking for a motivated and talented postdoctoral-level researcher with experience in genomic analyses to join the newly established Coorens group at EMBL-EBI. We study how normal cells in diff...
https://embl.wd103.myworkdayjobs.com/en-US/EMBL/job/Postdoctoral-Fellow-in-Coorens-Group_JR1892
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reposted by
Craig Anderson
Barbara Marte
3 months ago
new out in Nature this week
www.nature.com/articles/s41...
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The mutagenic forces shaping the genomes of lung cancer in never smokers - Nature
An analysis of data from the Sherlock-Lung study provides insight into the mutational processes that contribute to lung cancer in never smokers, and looks at the possible role of factors such as ...
https://www.nature.com/articles/s41586-025-09219-0
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reposted by
Craig Anderson
Aneta Mikulasova
4 months ago
We’re hiring! Postdoc in Computational Genomics at
@uoe-igc.bsky.social
Focus: myeloma, structural variants, heterochromatin, multiomics Deadline: 9 July 2025, 23:59 GMT Apply:
elxw.fa.em3.oraclecloud.com/hcmUI/Candid...
#myeloma
#postdoc
#genomics
#bioinformatics
#epigenetics
#codeandkilts
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Postdoctoral Research Associate in Computational Genomics
We are seeking a Postdoctoral Research Associate in Computational Cancer Genomics to join our team at the University of Edinburgh, funded by a Medical Research Council.
https://elxw.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_1001/job/12620
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reposted by
Craig Anderson
Jonathan Pritchard
4 months ago
I have an opportunity to hire a staff scientist for my lab. Looking for someone with outstanding skillset in ML/statistics, genomics applications; interest in mentoring, strong publication record, PD experience required. Email CV to me+cc my assistant (see 'contact' on my website). Ad to follow.
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reposted by
Craig Anderson
Andrew Blackford
4 months ago
We’re
#hiring
, please share! A fully funded
#postdoc
position is available in my lab to work on DNA damage response mechanisms. Please get in touch with your CV if you are interested; closing date: 27th June 2025. More details here:
candidate.hr-manager.net/ApplicationI...
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Postdoctoral Research Associate in the Blackford Group
A position as Postdoctoral Research Associate is available at the Department of Cellular and Molecular Medicine, in the group headed by Dr. Andrew Blackford. Th
https://candidate.hr-manager.net/ApplicationInit.aspx/?cid=1307&departmentId=19000&ProjectId=164280&MediaId=5&SkipAdvertisement=false
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reposted by
Craig Anderson
Andreas Panagopoulos
5 months ago
Delighted to share that the results of my main postdoc project are now published in
@nature.com
🔗
doi.org/10.1038/s415...
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Multigenerational cell tracking of DNA replication and heritable DNA damage - Nature
A multigenerational single-cell tracking approach provides a framework to dissect phenotypic plasticity at the single-cell level, offering insights into cellular processes that may resemble early even...
https://doi.org/10.1038/s41586-025-08986-0
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reposted by
Craig Anderson
Kelley Harris
5 months ago
.
@pnas.org
just published the final version of our manuscript on how generation time and effective population size interact to shape vertebrate germline mutation rates, led by Luke Zhu and Annabel Beichman:
www.pnas.org/doi/10.1073/...
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2423311122
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reposted by
Craig Anderson
Kelley Harris
5 months ago
If you’ve ever wondered about the statistical significance of differences among mutational signature profiles, check out our new Aggregate Mutation Spectrum Distance (AMSD) preprint co-led by Sam Hart and
@alisonfeder.bsky.social
with
@nalcala.bsky.social
www.biorxiv.org/cgi/content/...
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A signature-agnostic test for differences between tumor mutation spectra reveals carcinogen and ancestry effects
Mutational signatures contain valuable information about the mutational processes shaping cancer genomes. However, despite dozens of tools to identify signatures in cancer samples, there is not an est...
https://www.biorxiv.org/cgi/content/short/2025.05.15.654154v1
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reposted by
Craig Anderson
Kamila Naxerova
5 months ago
Social media grump Kamila has finally made it onto Bluesky! Please check out my new perspective on metastasis evolution in
@natrevcancer.nature.com
if you need a reprieve from the news. I tried my best to develop some new conceptual thoughts here, you be the judge whether I succeeded.
add a skeleton here at some point
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reposted by
Craig Anderson
Joris Veltman
5 months ago
We are hiring! Want to join my new group at the amazing
@uoe-igc.bsky.social
and perform ground-breaking studies in reproductive genomics and genomic medicine as a computational genomicist? Please DM me to discuss this, I will be attending
#ESHG2025
elxw.fa.em3.oraclecloud.com/hcmUI/Candid...
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Lecturer in Computational Genomics
Establishing an innovative research line as Lecturer in Computational Genomics related to reproductive disorders and genomic medicine. This Lecturer post is full-time (35 hours per week); however, we ...
https://elxw.fa.em3.oraclecloud.com/hcmUI/CandidateExperience/en/sites/CX_1001/job/12499
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reposted by
Craig Anderson
Trevor Graham
5 months ago
Tour de force from
@melissabarroux.bsky.social
on evolutionary and microenvironmental dynamics of oesophageal adenocarcinoma through neoadjuvant therapy Published
@natcancer.nature.com
Melissa is an outstanding new clinician scientist.. one to watch.
www.nature.com/articles/s43...
@icr.ac.uk
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Evolutionary and immune microenvironment dynamics during neoadjuvant treatment of esophageal adenocarcinoma - Nature Cancer
Graham and colleagues analyzed locally advanced esophageal adenocarcinoma clinical trial patient samples and identified major changes in gene expression profiles and immune microenvironment compositio...
https://www.nature.com/articles/s43018-025-00955-w
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reposted by
Craig Anderson
Sarah Aitken
5 months ago
🚨New preprint!🚨 Venturing out of the nuclear genome to explore
#mtDNA
: "Germline and somatic variation influence nuclear-mitochondrial crosstalk in tumourigenesis"
www.biorxiv.org/content/10.1...
Led by Dr. Maëlle Daunesse and
@paulflicek.bsky.social
- and many other
#LCEConsortium
members ⬇️
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Germline and somatic variation influence nuclear-mitochondrial crosstalk in tumourigenesis
Hepatocellular carcinoma is the most prevalent primary liver cancer and arises from hepatocytes, which are very metabolically active and contain abundant mitochondria. Despite extensive characterisati...
https://www.biorxiv.org/content/10.1101/2025.02.11.637769v2
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reposted by
Craig Anderson
Trevor Graham
5 months ago
With the brilliant
@mlockley.bsky.social
we've been exploring chemo resistance evolution in ovarian cancer. We find resistance has a fitness cost which means resistant cells are outcompeted by sensitive cells when treatment is stopped.
aacrjournals.org/cancerres/ar...
@icr.ac.uk
@qmbci.bsky.social
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Adaptive Therapy Exploits Fitness Deficits in Chemotherapy-Resistant Ovarian Cancer to Achieve Long-Term Tumor Control
Abstract. Drug resistance results in poor outcomes for cancer patients. Adaptive therapy is a potential strategy to address drug resistance that exploits competitive interactions between sensitive and...
https://aacrjournals.org/cancerres/article/doi/10.1158/0008-5472.CAN-25-0351/762071/Adaptive-Therapy-Exploits-Fitness-Deficits-in
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reposted by
Craig Anderson
Vijay G. Sankaran
5 months ago
Thrilled to see my
#MITS25
talk brought to life by the brilliant 🎨
@atjcagan.bsky.social
! Dive into the stellar science from
@g-agarwal.bsky.social
& co - fresh on bioRxiv:
www.biorxiv.org/content/10.1...
#Genomics
#SomaticEvolution
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reposted by
Craig Anderson
Sara Carioscia
5 months ago
I had an incredible time at the Mutations in Time and Space conference last week! There were a ton of interesting talks and I so appreciate the engagement with my work. Excited for more!
#MITS25
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reposted by
Craig Anderson
Cancer Research UK City of London Centre
5 months ago
Proud to have Prof Nicky McGranahan
#CRUKFunded
who co-lead City of London Centre Cancer Evolution theme charing and speaking about immunology and somatic evolution at
#AACR25
!
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reposted by
Craig Anderson
Geoff Macintyre
5 months ago
If you are at AACR and want to find out how we are turning chemotherapies into precision medicines, come to my talk on Tuesday!
www.abstractsonline.com/pp8/#!/20273...
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reposted by
Craig Anderson
Nature Reviews Genetics
5 months ago
New online! Advances in single-cell DNA sequencing enable insights into human somatic mosaicism
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Advances in single-cell DNA sequencing enable insights into human somatic mosaicism
Nature Reviews Genetics, Published online: 25 April 2025; doi:10.1038/s41576-025-00832-3In this Review, Shao et al. discuss experimental and computational advances in single-cell DNA sequencing, insights into somatic genetic variation during normal development and in disease, and the potential use of single-cell somatic mutations for lineage tracing, diagnostics and biomarkers.
https://www.nature.com/articles/s41576-025-00832-3?utm_source=dlvr.it&utm_medium=bluesky
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reposted by
Craig Anderson
Sarah Aitken
5 months ago
Thank you to the Mutations in Time and Space
#MITS25
organisers (and fellow attendees!) for a fantastic few days of Dynamic, Exciting, and Interesting science and people
@broadinstitute.org
A great week with old friends and collaborators, and making new ones... See you again in 2026 💙
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Craig Anderson
Donovan Anderson
5 months ago
Mutations in Time and Space 2025
#MITS25
was a fabulous meeting! So much science to digest over the weekend. Special thanks to the Broad for hosting. A special art connection between the MIT campus and the Allen Institute (my next door neighbor) in Seattle. Shared Jaume Plensa sculptures.
add a skeleton here at some point
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reposted by
Craig Anderson
Marta Grońska-Pęski
5 months ago
Bye Boston. It was a great conference.
#MutationsInTimeAndSpace
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This meeting wouldn't have been possible without our amazing sponsors and all the great attendees. Thanks everyone!!
#MITS25
5 months ago
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The best speaker prizes go to Jennifer Ziegenfuss and Sarah Carioscia!!
#MITS25
5 months ago
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Well done to the poster prize winners
#MITS25
Daan Andel Bradley Class Duncan Odom Sean Laidlaw
5 months ago
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That's a wrap! Thanks for all your work Tim, Kristin and Brady for leading the organisation
#MITS25
5 months ago
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Last talk! Bob Handshaker from Steve McCarroll's lab is taking us through mosaicism in Huntington's disease.
#MITS25
5 months ago
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Jennifer Ziegenfuss from UMass is up next, telling us about neurodegeneration in Parkinson's
#MITS25
5 months ago
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Henry Lee-Six is up next at
#MITS25
5 months ago
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I'm biased, but I loved it, great talk!! Don't forget
@s-j-aitken.bsky.social
is hiring! She's a great scientist and person- you couldn't find a better PI.
5 months ago
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Nicole Rockweiler is chairing the last part of
#MITS25
kicking off with
@s-j-aitken.bsky.social
Sarah Aitken's phenomenal work 👏
5 months ago
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Jimmy Bennett from University of Washington is being very supportive of
#MITS25
before taking us through pediatric cancers...
5 months ago
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Maria Torra I Benach is teaching us about Teratomas- awesome!
#MITS25
5 months ago
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Martin Bloomer shows us the Naxerova lab's cool methods for finding subclonal selection in colorectal cancer. Very cool
#MITS25
5 months ago
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It's a full house for Melissa Davis, who kicks off the last day of
#MITS25
in the somatic mutations and disease session chaired by Martin Taylor.
5 months ago
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reposted by
Craig Anderson
Eric Topol
5 months ago
New
@science.org
Exposomics. We're not doing nearly enough to understand and mitigate our toxic environmental exposures. A very insightful perspective
www.science.org/doi/10.1126/...
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