Caitie McCafferty
@computingcaitie.bsky.social
📤 1003
📥 419
📝 35
Postdoc in the
@cellarchlab.com
at the
@biozentrum.unibas.ch
. Find out more at ciliagirl.com.
pinned post!
Hi! My interests include structure prediction, proteomics, cryo-EM, and citizen science. Many of which are summarized in this review I wrote with
@cellarchlab.com
@svenklumpe.bsky.social
@rommieamaro.bsky.social
Wanda and Lucy earlier this year
tinyurl.com/CellreviewEM
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12 months ago
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Abigail Moye
9 days ago
Super happy this work is out and included in the really interesting cilia and flagella focused issue!
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦
9 days ago
🚨Our collaboration with
@centriolelab.bsky.social
&
@gautamdey.bsky.social
is out today in
@cp-cell.bsky.social
We show that
#Expansion
#Microscopy
is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky
#SciComm
#SciSky
www.cell.com/cell/fulltex...
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Journal of Cell Science
14 days ago
Our Special Issue on Cilia and Flagella: from Basic Biology to Disease, guest edited by
@cilialab.bsky.social
and
@lottepedersen.bsky.social
, is building. We’ll be highlighting all the articles over the next couple of weeks. Follow along at
#JCSciliaSI
.
journals.biologists.com/jcs/issue/13...
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Volume 138 Issue 20 | Journal of Cell Science | The Company of Biologists
https://journals.biologists.com/jcs/issue/138/20
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Caitie McCafferty
Ben Engel
14 days ago
A class like no other!! From
#AI
structure hallucination 🤖 to
#CryoEM
structure reality 🔬 by
@biozentrum.unibas.ch
@unibas.ch
undergraduate students👩🔬👩🎓 in just a few weeks! One of their creations is this beautiful flower-shaped tetrameric pore 🌼, a brand new member of the
#ProteinCosmos
🧶🧬 🧪
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That’s a wrap of the 2nd edition of our one of a kind structural biology block course at the
@biozentrum.unibas.ch
! In just 6 short weeks students designed protein oligomers; rotated in cryo-ET, cryo-EM SPA, AFM, and NMR labs; and expressed, purified, and structurally characterized their designs
15 days ago
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Mark your calendars for some cilia science!!!
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19 days ago
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Florent Waltz
22 days ago
Last Friday (17th), we had an amazing first Young Swiss Tomo meeting in Bern, organized with Elda Bauda, Zanetta Kechagia, and
@leonieanton.bsky.social
! Over 70 people from 🇨🇭 gathered to talk about cryo-electron tomography 🔬. Huge thanks to the DCI for making the event possible! See you next year! 👋
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Caitie McCafferty
Thibaut Brunet
about 1 month ago
Latest from ours:
www.cell.com/cell-reports...
This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵
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So much fun to host
@edwardmarcotte.bsky.social
at the
@biozentrum.unibas.ch
and introduce him to the
@cellarchlab.com
, thanks for a wonderful Discovery Seminar!!
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about 1 month ago
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Caitie McCafferty
Biozentrum, University of Basel
about 1 month ago
Assistant/Associate Professor in Structural Biology, Biophysics or Biological Imaging
www.biozentrum.unibas.ch/open-positio...
#biozentrum
#University
#Basel
#Professor
#Structural
#Biology
#Biophysics
#Biological
#Imaging
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You don’t want to miss this one!
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about 1 month ago
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Ben Engel
about 2 months ago
Meet the CAGE: a newly-discovered protein nanocapsule💊, conserved from bacteria to eukaryotes! Looks more like an eclair🍩 than a prezel🥨. This protein pastry now makes us wonder- what's the filling!? Huge congrats to the ever-amazing
@computingcaitie.bsky.social
, now at the
@biozentrum.unibas.ch
🧪🧶🧬
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I am excited to share our new preprint on the CAGE complex, a mysterious hollow protein complex that I first saw years ago while surveying Tetrahymena ciliary lysate
www.biorxiv.org/content/10.1...
#cilia
#protistsonsky
🧬🧪
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about 2 months ago
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Ben Engel
about 2 months ago
A molecular-resolution look into the near-native architecture of the spinach chloroplast🌱. This one was a long time in the oven, but we're happy to finally share our "version of record". What long-standing debates did we settle? Check back for a short thread🧵 on Monday.
#TeamTomo
#PlantScience
🧪🧶🧬🔬🌾
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John Wallingford
about 2 months ago
Side hustle level-up! My book, IN THE BEGINNING, will be published by
@harperonebooks.bsky.social
in 2027! It's about the human embryo, how it gets built, and what it means for where we come from and where we're going.
@harpercollins.bsky.social
(1/2)
@socdevbio.bsky.social
#devbiol
#scicomm
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Tanmay Bharat
2 months ago
Sub-cellular chemical mapping in bacteria using correlated cryogenic electron and mass spectrometry imaging Congrats Hannah Ochner and authors on this important paper! Strong collaboration with
@kiranrpatil.bsky.social
www.biorxiv.org/cgi/content/...
@mrclmb.bsky.social
@wellcometrust.bsky.social
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Caitie McCafferty
Paul & Virginie - Centriole Lab
2 months ago
Trouble imaging actin in ExM? Meet HAK-Actin, a probe for U-ExM, cryo-ExM & iU-ExM. Enables post-expansion labeling for max signal.
www.biorxiv.org/content/10.1...
Soon at
@spirochrome.com
Led by O.Mercey and
@lreymond.bsky.social
, in collab with
@dudinlab.bsky.social
and
@marinelap.bsky.social
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Caitie McCafferty
Nature
2 months ago
For some three billion years, unicellular organisms ruled Earth. Then, around one billion years ago, a new chapter of life began
go.nature.com/3JyRV4S
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How did life get multicellular? Five simple organisms could have the answer
Single-celled species that often stick together in colonies have researchers rethinking the origin of animals.
https://go.nature.com/3JyRV4S
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Caitie McCafferty
Biozentrum, University of Basel
3 months ago
Apply now for the prestigious and independent
#BiozentrumPhDFellowships
. Great science. Unique rotation-based selection of research group and other incentives. The summer call is open until October 12, 2025.
bit.ly/4caiqqX
@biozentrum.unibas.ch
@unibas.ch
#fellowship
#PhD#Switzerland
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Biozentrum PhD Fellowships
Share your passion for life sciences. If you are talented and highly motivated, want to broaden your horizons and are interested in a wide range of research topics, apply for one of the sought after B...
https://bit.ly/4caiqqX
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Paul & Virginie - Centriole Lab
4 months ago
📢 Excited to share our new study in Nature Communications! We show that the A-C linker safeguards centriole architecture & controls duplication. A big congratulations to Lorène for this beautiful discovery, which represents 4 years of her thesis work.
www.nature.com/articles/s41...
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Mia Konjikusic, PhD
4 months ago
‼️🚨Preprint alert! 🚨‼️ Excited to have some of my first works as a postdoc, and first corresponding author (!!), on biorxiv! This was a fun side quest of a project marrying a few things I deeply love, development, cilia, and hormones in the pituitary! Happy reading!
www.biorxiv.org/content/10.1...
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Primary cilia and BBS4 are required for postnatal pituitary development
Primary cilia orchestrate several signaling pathways, and their disruption results in pleiotropic disorders called ciliopathies. Bardet Beidl syndrome (BBS), one such ciliopathy, provides insights int...
https://www.biorxiv.org/content/10.1101/2025.07.15.664994v1
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦
4 months ago
Such a pleasure to be co-organising the
#Latsis
Symposium this year with Guillermina ! Thanks to all the speakers & sponsors. And all our teams members who helped make this a reality. It just felt right.
#Science
#WildCells
#ProtistsOnSky
#Cell
#Biology
#Biophysics
#Behaviour
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Wow! Really nice collaborative work in this piece on RSG1 in human ciliopathy and transition zone assembly
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4 months ago
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Ben Engel
5 months ago
Woo! Very excited to share our collaborative work on the centriole's Luminal Distal Ring ⭕. This project started 13 years ago with
@hugovdhoek.bsky.social
&
@stearnslab.bsky.social
, and then beautifully came together with
@computingcaitie.bsky.social
&
@centriolelab.bsky.social
.
#TeamTomo
#UExM
🧪🧶🧬🔬
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦
5 months ago
90% of you probably don’t need to read this. But maybe some of you are curious & 10% will feel seen. Or a little less alone. This isn’t about seeking sympathy. It’s about sharing something hard to say out loud; partly to heal, partly in case someone needs to hear it too. (1/3)
tinyurl.com/DudinO
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Omaya Dudin
Interview with Omaya Dudin, who uses Ichthyosporea as models to study how and why unicellular organisms evolved multicellularity at the University of Geneva.
https://www.cell.com/current-biology/fulltext/S0960-9822(25)00444-0
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Manon Demulder
5 months ago
We’re kicking off the DinoSphere Online Seminar Series! Join us for our first session with Karel Mockaer (Heidelberg) & Yong Heng Phua (OIST) 📅 1 July 9AM CEST 🔗
tinyurl.com/4mjaverj
Spread the word!
@protistwtmostest.bsky.social
@ehehenberger.bsky.social
@chandnibhickta.bsky.social
&Norico Yamada
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦
5 months ago
Share with your network, group members, colleagues & friends. We are extending the deadline till the 10th of June. This is your last chance of joining us this summer.
#Science
#ProtistsOnSky
#Cell
#Biology
#Microscopy
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Kevin Drew
5 months ago
Very excited that our work describing hu.MAP3.0 is published in
@molsystbiol.org
. Here we use machine learning to integrate >25k mass spectrometry experiments to place ~70% of human proteins into 15k protein complexes.
www.embopress.org/doi/full/10....
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hu.MAP3.0: atlas of human protein complexes by integration of >25,000 proteomic experiments | Molecular Systems Biology
imageimagehu.MAP3.0 integrates mass spectrometry experiments to identify human protein complexes. Using this resource, this study characterizes covariation of complexes, identifies mutually exclusive ...
https://www.embopress.org/doi/full/10.1038/s44320-025-00121-5
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Ariane Briegel
6 months ago
Great dinner with our cryoET friends from Basel!
@sofie-dot-rec.bsky.social
@computingcaitie.bsky.social
@cellarchlab.com
@jacky and Mohamad Harastani
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Caitie McCafferty
Priya Ramakrishna
6 months ago
🌱 Excited to share that I will start my lab at EPFL, CH this June supported by a
@snsf.ch
Starting Grant!
ramakrishna.ch
We are interested in plant mineral nutrition and will deep-dive into the fine-tuned mechanisms employed by plants to adapt to abiotic stresses such as salinity.
#newPI
#plantsci
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Plant Adaptation Lab (PAL) – Situated at Institute of Environmental Engineering, EPFL, Switzerland
https://ramakrishna.ch/
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Anthony Leung
6 months ago
What a fantastic day of science at FCBIS!
@friedlab.bsky.social
and I had a blast co-organizing this exciting dive into the chemistry-biology interface—great conversations, amazing energy, and a standout keynote by
@edwardmarcotte.bsky.social
. Thanks to all who joined us!
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Florent Waltz
8 months ago
I'm super happy that our story is now published! 📖
www.science.org/doi/10.1126/...
But what changed compared to the original preprint? Also, I feel i should post Movie 1 🎥, that inspired the cover. Back when I did the original bluesky thread, movies were not available.
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Florent Waltz
8 months ago
The final version of our work on the in-cell architecture of the mitochondrial respiratory chain is now online in
@science.org
🎉 You can find the full story here
www.science.org/doi/10.1126/...
@verenaresch.bsky.social
did a wonderful job on the cover and animation, she really brought it to life 👩🎨
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Thibaut Brunet
9 months ago
Excited to announce the 10th "Choanoflagellates & Friends Workshop" over May 20-22 in our own Institut Pasteur in Paris:
2025choanocon.wordpress.com
Registrations open til March 15, abstract til March 5. Pre-conference event for students/postdocs on 19/05. Plenty of slots for selected talks/posters!
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Caitie McCafferty
Florent Waltz
9 months ago
We (
@cellarchlab.com
peeps,
@manondemulder.bsky.social
@phaips.vd.st
@fannyleblanc.bsky.social
@computingcaitie.bsky.social
and Ricardo) had a blast at the EMBO in situ meeting in Heidelberg! Meeting old friends and making new ones! Lots of cool science and new ideas to try 👨🏻🔬🔬
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Abigail Moye
10 months ago
Excited to share our ✨preprint✨ from my work in Ted Wensel's lab! We present novel insights into the photoreceptor-specific roles of CEP290. 🧵👇 Thanks for the helpful participation from everyone involved, especially
@mrobichaux.bsky.social
and
@agostolab.bsky.social
!
www.biorxiv.org/content/10.1...
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Priya Ramakrishna
10 months ago
Most plants can`t handle salt, but have evolved strategies to survive in it. How do they do it?🌱🧪 Excited to share some of our first insights using a new cryoelemental imaging technique to answer these questions at the subcellular scale!(1/8)
www.nature.com/articles/s41...
@nature.com
#PlantScience
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Elemental cryo-imaging reveals SOS1-dependent vacuolar sodium accumulation - Nature
This study demonstrates that cryo nanoscale secondary ion mass spectrometry (CryoNanoSIMS) enables direct multi-elemental imaging at subcellular resolution of macro- and micronutrients or trace elemen...
https://www.nature.com/articles/s41586-024-08403-y
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David Mick
10 months ago
Proud to share our work spear-headed by PhD student Tommy Sroka with major contributions by
#xenopus
expert Kerstin Feistel. Our iAPEX
#ProximityLabeling
method for
#MassSpec
based subcellular
#proteomics
works by locally generating H2O2 using a D-amino acid oxidase that activates APEX2 in situ.
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iAPEX: Improved APEX-based proximity labeling for subcellular proteomics using an enzymatic reaction cascade
Ascorbate peroxidase (APEX) is a versatile labeling enzyme used for live-cell proteomics at high spatial and temporal resolution. However, toxicity of its substrate hydrogen peroxide and background la...
https://www.biorxiv.org/content/10.1101/2025.01.10.632381v1
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Ben Engel
10 months ago
Towards community-driven visual proteomics! Excited to finally share this large-scale curated & annotated dataset of 1829 high-quality
#cryoET
tomograms of the little green alga that just keeps giving— Chlamydomonas! 🧪🧶🧬🌾🌊🌍 Preprint📜:
www.biorxiv.org/content/10.1...
A short thread🧵👇
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Rui Zhang
10 months ago
Best way to start 2025! Thrilled to share our Nature paper about the structures of axonemal components from sperm flagella and from epithelial cilia of the oviduct and brain ventricles. Great collaboration with Tzviya Zeev-Ben-Mordehai and
@alanbrownhms.bsky.social
www.nature.com/articles/s41...
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Ben Neely
11 months ago
I think I follow lab topics more than specific papers, and easily my top (def top 3) thing [still] going on in 2024 in proteomics land is
@edwardmarcotte.bsky.social
et al.
pubmed.ncbi.nlm.nih.gov/38853926/
www.biorxiv.org/content/10.1...
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Ancient eukaryotic protein interactions illuminate modern genetic traits and disorders - PubMed
All eukaryotes share a common ancestor from roughly 1.5 - 1.8 billion years ago, a single-celled, swimming microbe known as LECA, the Last Eukaryotic Common Ancestor. Nearly half of the genes in moder...
https://pubmed.ncbi.nlm.nih.gov/38853926/
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Philippe Van der Stappen
11 months ago
More than 1'800 tomograms available for the community. Towards visual proteomics using our favorite organism Chlamy! Check out the preprint:
www.biorxiv.org/content/10.1...
Find it on EMPIAR (11830) and fully annotated on the CZI data portal:
cryoetdataportal.czscience.com
#TeamTomo
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Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii
In situ cryo-electron tomography (cryo-ET) has emerged as the method of choice to investigate structures of biomolecules in their native context. However, challenges remain in the efficient production...
https://www.biorxiv.org/content/10.1101/2024.12.28.630444v1
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Yay I get to stay!
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11 months ago
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I am excited to share some of my PhD work on the motile cilia interactome revealed by XL/MS with
@jbwallingford.bsky.social
@edwardmarcotte.bsky.social
Ophelia Papoulas, Chanjae Lee, David Taylor, and
@builab.bsky.social
www.cell.com/developmenta...
11 months ago
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Rita Strack
11 months ago
I could not be more thrilled to announce the Nature Methods
@naturemethods.bsky.social
Method of the Year is Spatial Proteomics! Please see our editorial as a roadmap to the fantastic content in this special issue!
www.nature.com/articles/s41...
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Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
https://www.nature.com/articles/s41592-024-02565-3
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New preprint from
@wojwie.bsky.social
@lorenzlamm.bsky.social
@cellarchlab.com
looking at spinach thylakoid membrane organization using cryo-ET and some exciting new segmentation and particle picking tools!
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12 months ago
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Biozentrum, University of Basel
12 months ago
❄️Winter time in Basel! Let it snow...❄️
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Caitie McCafferty
Wallace Marshall
12 months ago
How do organelles fit together inside a crowded cell? Answering this question requires a way to image many organelles in a whole cell at high resolution with high throughput. Our new preprint shows how to do this in yeast using soft x-ray tomography
www.biorxiv.org/content/10.1...
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Ben Engel
12 months ago
Say hi 👋 to
@fannyleblanc.bsky.social
! Five CellAchLab members on bsky💙 so far, including
@computingcaitie.bsky.social
@sofie-dot-rec.bsky.social
@florentwaltz.bsky.social
@wojwie.bsky.social
. Science party!👩🔬🕺
#TeamTomo
#CryoEM🧪🔬🧶🧬🌾
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🤪
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12 months ago
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