Jess Heebner
@jessheebner.bsky.social
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Deep Learning CryoET Image Analysis Specialist, cat lover, dog lover, mother to a 5yo tyrant
reposted by
Jess Heebner
Elisa Granato
about 17 hours ago
JOB ALERT! 📢 For the scientists who love science communication: we’re hiring at
@kurzgesagt.org
!🌍 Come join our team, the vibes are impeccable. ✍️ Scriptwriter (Remote)
kurzgesagt.org/careers/scri...
🔍 Fact-Checker & Researcher (Munich/Berlin/Remote)
kurzgesagt.org/careers/seni...
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Job listing for (Senior) Fact-Checker & Researcher (all genders) | kurzgesagt
Want to work with kurzgesagt? We have an open role as (Senior) Fact-Checker & Researcher (all genders). Apply now to become part of a great team and start an exciting career!
https://kurzgesagt.org/careers/senior-fact-checker-and-researcher-all-genders-413680
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reposted by
Jess Heebner
the Mountain Goats
7 days ago
When you get the reputation of being the guy with the encouraging words on New Year's Eve, it can start to come through as a little pressure -- what if the situation on the ground is worse than usual? what if people are more scared than they usually are, and with cause? what use are good vibes then?
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This might be my favorite piece of conference swag ever. My 5yo is obsessed with it.
#cellbio2025
@jcb.org
26 days ago
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reposted by
Jess Heebner
Beata Science Art
about 1 month ago
If you're passionate about
#SciArt
and
#SciComm
, don't miss our exciting session today at
#ASCB
#CellBio2025
! Thank you
@ascbiology.bsky.social
!
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What are your plans for
#cellbio2025
? Aside from eating too much at Reading Terminal Market and wandering the Christmas Market in my spare time... Come find me to chat all things segmentation (and come see my work displayed along the back wall of the Thermo Fisher booth!)
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about 1 month ago
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Going to
#ASCB2025
in Philly? Come find me! I'll be haunting the Thermo Fisher booth and wandering the conference. I'd love love love to talk all things segmentation! Let's get coffee. Show me your data. Reach out!
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about 1 month ago
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reposted by
Jess Heebner
Debnath Ghosal
5 months ago
📣 New paper alert! Just out in Cell Reports!
pubmed.ncbi.nlm.nih.gov/40644298/
Thrilled to share that we have discovered a brand-new anti-phage defense system! Bacteria have evolved various defense strategies (CRISPR etc) to counter phage attacks. We found a new one - fascinating and dramatic ⚔️🦠❄️🔬
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reposted by
Jess Heebner
Leah Lavery
7 months ago
NEW! Hydra Bio Plasma-FIB features AI protocols for bio specimens. Capture high-res 3D data from cryo-preserved or resin-embedded samples & generate high-quality cryo lamellae. Register for June 24 webinar to learn from users how they've enhanced their
#volumeEM
and
#teamtomo
prep.
ter.li/d8b427
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Can't wait to try this out! I have loved seeing my segmentations come to life in Blender
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8 months ago
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reposted by
Jess Heebner
Marnie Blewitt
8 months ago
www.wehi.edu.au/careers/make...
WEHI is looking for new lab heads! New and experienced lab heads welcome. Check out the ad, consider applying and share. We’re a collaborative bunch, in Australia, with fabulous technology, great colleagues at a values-driven organisation.
@wehi-research.bsky.social
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Make your future Melbourne | WEHI
Lead the next wave of biomedical discovery
https://www.wehi.edu.au/careers/make-your-future-melbourne/
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reposted by
Jess Heebner
Philippe Van der Stappen
8 months ago
Hey
#TeamTomo
, Ever been in need of a tutorial about the fundamentals of cryo-electron tomography? From preprocessing raw frames to high-res subtomogram averaging? That's why
@florentwaltz.bsky.social
and I made this website!
tomoguide.github.io
Follow the thread 1 /🧵
#CryoET
#CryoEM
🔬🧪
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Welcome to TomoGuide
A step-by-step Cryo-ET guide
https://tomoguide.github.io/
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reposted by
Jess Heebner
Ricardo D. Righetto
9 months ago
We have updated our
#MemBrain
v2 preprint with a lot more details about the MemBrain-pick and MemBrain-stats modules, as well as some application examples! Stay tuned for the upcoming thread by lead author
@lorenzlamm.bsky.social
! 🧠🧵
#CryoET
#TeamTomo
www.biorxiv.org/content/10.1...
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reposted by
Jess Heebner
Leah Lavery
9 months ago
So thrilled to unveil the Krios 5 Cryo-TEM for studying cellular structures and molecular interactions. Thank you to the many, many teammates that made this possible. Watch the video! Watch the more & sign up for virtual event on May 14:
ter.li/ueeqfs
www.linkedin.com/posts/thermo...
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Introducing the Krios 5 Cryo-Transmission Electron Microscope | Thermo Fisher Scientific
Today, we introduce the Krios 5 Cryo-Transmission Electron Microscope, which provides atomic-level insights to help scientists study how cells, proteins and viruses work. Its enhanced optics and new A...
https://www.linkedin.com/posts/thermo-fisher-scientific_introducing-the-krios-5-cryo-transmission-activity-7313183577276305408-M9Hz?utm_source=social_share_send&utm_medium=member_desktop_web&rcm=ACoAAADgbT0BXVZqc2UQwH1as7I2clH_q1oHksU
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reposted by
Jess Heebner
Ben Engel
10 months ago
We're on the cover of
@science.org
this week. Awesome work by
@florentwaltz.bsky.social
.
#CryoET
is reaching crazy resolutions inside cells, and this is just the beginning. Fantastic interpretation of the proton motive force by
@verenaresch.bsky.social
. Always a pleasure making
#SciArt
with you!🧪🧶🧬🌾
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Things always get worse before they get better..something something pithy... I'm reposting this because the situation has become more urgent and exponentially more stressful. <3
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10 months ago
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reposted by
Jess Heebner
Ricardo D. Righetto
10 months ago
To all
#TeamTomo
#CryoET
and
#Chlamydomonas
aficionados: we have updated EMPIAR-11830 with a bug fix concerning some cryo-CARE denoised tomos as well as additional files and metadata! 🎉👩🏽💻
www.ebi.ac.uk/empiar/EMPIA...
A little thread about what's new... 🧵 1/n
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Excited to see this out!!
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11 months ago
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I typically stick to science/cryoem posts here, but this is very important to me as this is my brother and his family. I want to see them safe. <3
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11 months ago
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reposted by
Jess Heebner
Grigory Tagiltsev
about 1 year ago
Finally out! Working with this team was a fantastic learning experience. Also I was excited to determine the in situ clathrin structure for this project! That’s my first EM-structure upload to EMDB. Can I tell my mom I am a structural biologist now? 😁
#cryoET
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reposted by
Jess Heebner
Pavol Harar
about 1 year ago
Thanks Alicia! I am also happy to have helped finalize this work. I hope computational biologists will find the repo useful. We need to share more annotations in accessible format, the algorithms are hungry 😄
#teamtomo
, consider sharing your data via pull requests—let’s grow this together! 🤝
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Excited to finally get to share the segmentations I've been doing for this project! Eventually I'll get all 1829 tomograms segmented as fully as I can. But.... long term project. For now I'm just excited to see it out in the wild!
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about 1 year ago
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reposted by
Jess Heebner
Florent Waltz
about 1 year ago
Check this out, maybe your last read of the year, or the first for the next one 📖? We used Chlamydomonas 🦠 to push cellular tomography towards the next step and made all the data public! BTW it's the same dataset I used for the mitochondrial respirasomes
www.biorxiv.org/content/10.1...
Enjoy 🥳!
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reposted by
Jess Heebner
Philippe Van der Stappen
about 1 year ago
More than 1'800 tomograms available for the community. Towards visual proteomics using our favorite organism Chlamy! Check out the preprint:
www.biorxiv.org/content/10.1...
Find it on EMPIAR (11830) and fully annotated on the CZI data portal:
cryoetdataportal.czscience.com
#TeamTomo
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Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii
In situ cryo-electron tomography (cryo-ET) has emerged as the method of choice to investigate structures of biomolecules in their native context. However, challenges remain in the efficient production...
https://www.biorxiv.org/content/10.1101/2024.12.28.630444v1
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reposted by
Jess Heebner
Daniel Wendscheck
about 1 year ago
Post-Doc Position WANTED⚡️ I'll finish my PhD work within the next few month and started to sort out where to continue doing exciting science. Any recommendations & suggestions are welcome🙏 More information on my scientific background and ideas for the future below 🧵 reskeet very much appreciated!
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reposted by
Jess Heebner
STCmicrobeblog
about 1 year ago
tagging
#CryoEM
#CryoET
#TeamTomo
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Anyone have any publicly available data (or data you want to share with me) that you'd love to see segmented? I find myself in need of some fun data to segment in my free time...
#cryoET
or
#volumeEM
!
about 1 year ago
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Coming to
#ASCB2023
? I'd love to chat! Come to my talk in the Deep Learning and AI in Cell Imaging subgroup on Saturday at 1pm (Room 253B) or stop by my poster (B4) on Tuesday at 1:45 onwards.
about 2 years ago
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First post! Imagine segmenting this by hand! This took about 30 minutes to make the training data, only 30 minutes to train and 20 minutes to segment. Data is Empiar 10694 and the network is a Pretrained 2.5D UNet from
www.theobjects.com
youtube.com/watch?v=4kb9...
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Empiar 10694
https://youtube.com/watch?v=4kb930STKS0
over 2 years ago
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