Augustinas Silale
@augustsilale.bsky.social
📤 162
📥 121
📝 9
Structural biology, membrane proteins, microbiology. Postdoc. Newcastle upon Tyne. 🧪🧫❄️🔬🇱🇹🏳️🌈
pinned post!
Our paper on the Bacteroidota BAM complex is out in
@natmicrobiol.nature.com
! With
@madejmar.bsky.social
We found that BAM in Bacteroides and Porphyromonas gingivalis has a distinct architecture from BAM in Proteobacteria.
doi.org/10.1038/s415...
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Structure of a distinct β-barrel assembly machinery complex in the Bacteroidota - Nature Microbiology
Structural and functional characterization of the β-barrel assembly machinery complex in Bacteroidota reveals a distinct, seven-component complex with a large extracellular domain that may enable β-barrel–surface lipoprotein complex assembly.
https://doi.org/10.1038/s41564-025-02132-2
about 2 months ago
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Jon Marles-Wright
4 days ago
Pleased to see this collaboration with a great PhD student Pei Cing Ng, from Prof. Luning Liu's lab at Liverpool University published. Structure of the H. neapolitanus carbonic anhydrase and localisation in a mini-carboxysome:
www.pnas.org/doi/epdf/10....
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Augustinas Silale
TJ McCorvie
6 days ago
I am excited to share our new preprint on our structural and biochemical analyses of human methionine synthase (MTR). This was the hard work of Douglas Ferreira who carried out this research as a significant part of his PhD.
#CryoEM
www.biorxiv.org/content/10.1...
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Structural insights into cobalamin loading and reactivation of human methionine synthase
Human methionine synthase (MTR) is an essential enzyme of one carbon metabolism. Consisting of a catalytic N-half and a cobalamin binding C-half, MTR utilises this intricate organometallic cofactor in...
https://www.biorxiv.org/content/10.1101/2025.11.10.687659v1
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Augustinas Silale
Tanmay Bharat
10 days ago
An Asgard archaeon with internal membrane compartments Brilliant study led by
@fmacleod.bsky.social
and Andriko von Kügelgen. Tight collaboration with
@buzzbaum.bsky.social
and lab. Congrats to all authors!
www.biorxiv.org/content/10.1...
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Augustinas Silale
Newcastle University Structural Biology Facility
10 days ago
Next up Dr Francesca Mazzotta from Max Plank with some beautiful structures of peptide nanofibrils
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Augustinas Silale
Prof Paula Salgado
10 days ago
Lovely to have 5 “generations” of
#Salgadolab
PhD students together at
#ccp4north
! In chronological order:
@adamcrawshaw.bsky.social
, Paola Lanzoni-Mangutchi,
@vic0210.bsky.social
, Ellie Rockliff and
@pav2601.bsky.social
.
#proudPI
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Augustinas Silale
Nature Microbiology
14 days ago
Dive into our November issue featuring: 🪆nested archaeal symbioses 🌱microbiota driven drought responses in plants 🏗️ BAM complex in Bacteroidota 💨microbial fermentative growth in the gut 🍸hospital-specific phage therapy cocktail and much more..!
www.nature.com/nmicrobiol/v...
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Augustinas Silale
James Connolly
15 days ago
If you are interested in researching how drug resistant bacteria evade killing by our immune system, them this PhD project is for you. Come join the our team at Newcastle, in collaboration with University of Liverpool, and lead research at the interface of microbiology, immunology and metabolomics.
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MRC DiMeN Doctoral Training Partnership: Hiding in plain sight: How multi-drug resistant pathogens evade detection and killing by human neutrophils at Newcastle University on FindAPhD.com
PhD Project - MRC DiMeN Doctoral Training Partnership: Hiding in plain sight: How multi-drug resistant pathogens evade detection and killing by human neutrophils at Newcastle University, listed on Fin...
https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnership-hiding-in-plain-sight-how-multi-drug-resistant-pathogens-evade-detection-and-killing-by-human-neutrophils/?p189404
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Kate Beckham
15 days ago
Want to find ways to combat TB? Check out this PhD position 👇
add a skeleton here at some point
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Augustinas Silale
Alessandra Dantas
17 days ago
Want to work within a multidisciplinary group to combat antifungal resistance in Candida spp? Fully-funded MRC PhD studentship in collaboration with
@nclfungalgroup.bsky.social
and Francesco Del Carratore on the mode of action of a new class of antifungal drugs.
www.findaphd.com/phds/project...
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MRC DiMeN Doctoral Training Partnership: Targeting thioredoxin reductase to combat antifungal resistance in Candida spp. at Newcastle University on FindAPhD.com
PhD Project - MRC DiMeN Doctoral Training Partnership: Targeting thioredoxin reductase to combat antifungal resistance in Candida spp. at Newcastle University, listed on FindAPhD.com
https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnership-targeting-thioredoxin-reductase-to-combat-antifungal-resistance-in-candida-spp/?p189446
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Augustinas Silale
Kevin Whitley
17 days ago
Interested in a PhD at the intersection of biophysics and microbiology? Apply for this MRC-funded opportunity at Newcastle University to do cutting-edge microscopy in Mycobacterium tuberculosis! 🔬🦠 Closing 4 Dec!
www.findaphd.com/phds/project...
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MRC DiMeN Doctoral Training Partnership: Molecular mechanism of slow growth and antibiotic tolerance in Mycobacterium tuberculosis using single-molecule microscopy at Newcastle University on FindAPhD....
PhD Project - MRC DiMeN Doctoral Training Partnership: Molecular mechanism of slow growth and antibiotic tolerance in Mycobacterium tuberculosis using single-molecule microscopy at Newcastle Universit...
https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnership-molecular-mechanism-of-slow-growth-and-antibiotic-tolerance-in-mycobacterium-tuberculosis-using-single-molecule-microscopy/?p189436
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Augustinas Silale
Microbes in Health and Disease
15 days ago
Prospective PhD Students! The MRC DiMeN Doctoral Training Partnership PhD Projects are now online.. lots of exciting opportunities to join us here in Newcastle. Take a look 👀
www.findaphd.com/phds/mrc-dim...
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Newcastle University, MRC DiMeN Doctoral Training Partnership PhD Projects, Programmes & Scholarships - 21 PhDs Listed
FindAPhD. Search Funded PhD Projects, Programmes & Scholarships at Newcastle University, MRC DiMeN Doctoral Training Partnership.
https://www.findaphd.com/phds/mrc-dimen-doctoral-training-partnership/?c0gI0sl3
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Augustinas Silale
TJ McCorvie
17 days ago
Scary orientation bias has arrived for Halloween. 👻🔬
#CryoEM
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Augustinas Silale
Dr Katherine Duncan
19 days ago
If you’re interested in metals, microbes and maths 🤘 - please check out this PhD on the impact of metals on microbial communities with
@thecopperdoctor.bsky.social
@blindmath.bsky.social
Denis Patterson and myself, you’d be based in Durham & be part of a vibrant interdisciplinary research group
add a skeleton here at some point
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Augustinas Silale
Harry Low’s Lab
19 days ago
Please RT. Post-doc opportunity alert! 💥 closing 10th December.. Come join our team (
www.thelowlab.org
) at Imperial, London, working on the structure and mechanism of bacterial secretion systems. For more details and to apply please see
www.imperial.ac.uk/jobs/search-...
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Augustinas Silale
John Innes Centre
about 1 month ago
Shortlisted candidates will be invited to give a seminar at the Fellows Conference, which will be held on 10 March 2026. Candidates who win Fellowships will be offered a Tenure Track Group Leader position from the outset, initially for 5 years. Find out more:
www.jic.ac.uk/training-car...
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Independent Research Fellowships Leading to Tenured Faculty Positions | John Innes Centre
The John Innes Centre (JIC), is a world leading centre of excellence in plant and microbial sciences based on the Norwich Research Park, UK. We are inviting applications from outstanding researchers…
https://www.jic.ac.uk/training-careers/independent-research-fellowships-leading-to-tenured-faculty-positions/
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Augustinas Silale
27 days ago
Looking forward to the Grand Opening of the Northern Eye Imaging facility on 5th November at the Frederick Douglass Centre, Newcastle. Register now
nusbf.ncl.ac.uk/ccpem-tfs-ne...
for the latest
#structuralbiology
and
#cryoem
in the region, to see the new Tundra cryo-TEM and lots more!
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Augustinas Silale
Ellie Boardman
28 days ago
We’ve kept registrations open till the end of this week so get your last minute applications in for posters and talks!
add a skeleton here at some point
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Augustinas Silale
Ellie Boardman
about 1 month ago
The CCP4 Northern Structural Biology Meeting is back again in Newcastle 6-7th November 2025. If you are a structural biologist/biochemist in the North of the UK please register and submit abstracts by this Friday 17th.
nusbf.ncl.ac.uk/ccp4-norther...
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https://nusbf.ncl.ac.uk/ccp4-northern-conference-2025/
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Augustinas Silale
Alessandra Dantas
about 1 month ago
Prof Quinn telling us about her novel findings on bacterial type-VI secretion mediated killing of fungi.
@mhd-newcastle.bsky.social
@nclfungalgroup.bsky.social
#Candida2025
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Augustinas Silale
Tracy Palmer
about 1 month ago
Check it out! A proper team effort from past and present group members and a great collaboration with
@sergemostowylab.bsky.social
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Our paper on the Bacteroidota BAM complex is out in
@natmicrobiol.nature.com
! With
@madejmar.bsky.social
We found that BAM in Bacteroides and Porphyromonas gingivalis has a distinct architecture from BAM in Proteobacteria.
doi.org/10.1038/s415...
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Structure of a distinct β-barrel assembly machinery complex in the Bacteroidota - Nature Microbiology
Structural and functional characterization of the β-barrel assembly machinery complex in Bacteroidota reveals a distinct, seven-component complex with a large extracellular domain that may enable β-barrel–surface lipoprotein complex assembly.
https://doi.org/10.1038/s41564-025-02132-2
about 2 months ago
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Augustinas Silale
Lis Lowe
about 2 months ago
Spending some time collecting memories of Harry today 🥺 - this is when he was elected a Fellow of the Royal Society. If anyone in the
#glycotime
universe has pictures or memories of Harry Gilbert they want to share please send them my way 💚
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Augustinas Silale
Microbes in Health and Disease
about 2 months ago
Now we are on Bluesky, over the next couple of days we would like to introduce some of the MHD groups on Bluesky who you can follow for more research updates. Or check out our handy MHD starter pack 😀
go.bsky.app/SoVnvW3
add a skeleton here at some point
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Augustinas Silale
Rhys Grinter
about 2 months ago
The outer membrane of Gram-negative bacteria blocks many antibiotics. Our latest work reveals that L-type pyocins bypass this barrier by inactivating the BAM complex, killing Pseudomonas aeruginosa without entering the cell, providing a new blueprint for beating antibiotic resistance.
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A Protein Antibiotic Inhibits the BAM Complex to Kill Without Cell Entry
Many antibiotics are ineffective against Gram-negative pathogens such as Pseudomonas aeruginosa because they cannot penetrate the bacterial outer membrane. Here, we show that protein antibiotics calle...
https://www.biorxiv.org/content/10.1101/2025.09.18.677229v1
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Agathe couturier
2 months ago
Exclusion systems, far from slowing down plasmid spread, are in fact essential to preserve host cell viability and thereby ensure the successful dissemination of conjugative plasmids and antibiotic resistance genes.
@nfrk92.bsky.social
@narjournal.bsky.social
academic.oup.com/nar/article/...
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Exclusion systems preserve host cell homeostasis and fitness, ensuring successful dissemination of conjugative plasmids and associated resistance genes
Abstract. Plasmid conjugation is a major driver of antibiotic resistance dissemination in bacteria. In addition to genes required for transfer and maintena
https://academic.oup.com/nar/article/53/17/gkaf898/8252029?utm_source=advanceaccess&utm_campaign=nar&utm_medium=email
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Augustinas Silale
Stephen Garrett
2 months ago
Really excited to share my first paper from the Whitney lab, alongside an amazing grad student, Polina. Here we identify a chaperone family required for the folding of a central domain of T7SS toxins, and solve the structure of the chaperone-toxin complex.
www.pnas.org/doi/10.1073/...
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A widespread family of molecular chaperones promotes the intracellular stability of type VIIb secretion system–exported toxins | PNAS
To survive in highly competitive environments, bacteria use specialized secretion systems to deliver antibacterial toxins into neighboring cells, t...
https://www.pnas.org/doi/10.1073/pnas.2503581122
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TJ McCorvie
3 months ago
nusbf.ncl.ac.uk/blog/2025/08...
If you want to see the progress of the installation of the Tundra TEM at
@nusbf.bsky.social
@newcastleuni.bsky.social
Johan has been kindly updating the website with pictures as it is being assembled.
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Progress Update: Tundra Installation — August 20, 2025 - NUSBF
We’re excited to share the latest advances in the Tundra project as of 20 August 2025. The installation is moving swiftly, and here’s how things stand: The wiring had continued and the microscope is c...
https://nusbf.ncl.ac.uk/blog/2025/08/20/the-tundra-installation-progress/
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Augustinas Silale
Melissa Webby
3 months ago
🦠 A fan of bacteria? We're hiring a Research Technician to join our team at the
@warwicklifesci.bsky.social
@uni-of-warwick.bsky.social
Positive, organised, skills in molecular biology and protein purification? Apply here 👉
warwick-careers.tal.net/vx/appcentre...
Please share! 🔬
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Augustinas Silale
James Connolly
4 months ago
Absolutely delighted to share the labs latest work. We identify and characterise two pathways for D-ribulose utilisation in pathogenic EHEC and Citrobacter.
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Convergent evolution of distinct D-ribulose utilisation pathways in attaching and effacing pathogens - Nature Communications
Cottam et al. identify distinct pathways for D-ribulose utilisation in pathogenic Escherichia coli and Citrobacter rodentium, providing mechanistic details and suggesting convergent evolution towards ...
https://www.nature.com/articles/s41467-025-62476-5
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Augustinas Silale
Michael Deghelt
4 months ago
#microsky
We challenge the long-standing view that peptidoglycan alone protects cells from bursting. Our study shows that the periplasm — enclosed by OM–PG connections — acts as a pressure buffer essential for osmoprotection in Gram-negative bacteria. 📄
www.nature.com/articles/s41...
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Peptidoglycan–outer membrane attachment generates periplasmic pressure to prevent lysis in Gram-negative bacteria - Nature Microbiology
Outer membrane attachment to peptidoglycan enables periplasmic pressure to build up and counter cytoplasmic turgor pressure, preventing lysis during osmotic challenges in Escherichia coli.
https://www.nature.com/articles/s41564-025-02058-9
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Dr Katherine Duncan
4 months ago
*JOB AD*: interested in doing a postdoc in microbial metabolomics? Passionate about natural products mass spec? Come join the group! Informal enquires welcome! Closing Date: 19 August 2025
jobs.ncl.ac.uk/job/Newcastl...
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Research Associate - Microbial Metabolomic
Research Associate - Microbial Metabolomic
https://jobs.ncl.ac.uk/job/Newcastle-Research-Associate-Microbial-Metabolomic/1227335101/
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Augustinas Silale
Rob Klose
4 months ago
My wonderful colleage Colin Kleanthous is raising money for the MND association. Please support Colin in this worthy endeavor!
www.justgiving.com/page/colin-k...
(Please repost!)
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Colin Kleanthous' fundraiser for Motor Neurone Disease Association
Help Colin Kleanthous raise money to support Motor Neurone Disease Association
https://www.justgiving.com/page/colin-kleanthous-iveagh
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Augustinas Silale
Yoann Santin
4 months ago
You thought all OMPs were trimeric? 🧐 Not in our predator B. bacteriovorus! 🦠 Excited to have contributed to this great collab with the Lovering lab on this intriguing protein.
@lalouxlab.bsky.social
👉 Paper here!
www.nature.com/articles/s41...
#BacterialPredation
#Bdellovibrio
#StructuralBiology
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A porin-like protein used by bacterial predators defines a wider lipid-trapping superfamily - Nature Communications
This study reveals that an outer membrane protein from the predator Bdellovibrio bacteriovorus forms a pentameric assembly that traps a lipid monolayer within. This allows the discovery of two superfa...
https://www.nature.com/articles/s41467-025-61633-0
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Augustinas Silale
Herve Celia
5 months ago
After an unexpectedly long editorial process, our paper describing the structures of the E coli TolAQR and TonB-ExbBD complexes is finally out. The coordinates are to be released on July 9th on the PDB.
www.nature.com/articles/s41...
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Cryo-EM structures of the E. coli Ton and Tol motor complexes - Nature Communications
The Ton and Tol systems are bacterial energy-transducing complexes that use the proton motive force at the inner membrane to exert force on outer membrane proteins. Here the authors present the high-r...
https://www.nature.com/articles/s41467-025-61286-z
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Augustinas Silale
Kiran R. Patil
5 months ago
Excited to share some key details on our latest research in
@natmicrobiol.nature.com
reporting intra-cellular accumulation of
#PFAS
(aka forever chemicals) by certain human gut bacteria.
#microsky
#mevosky
#microbiomesky
www.nature.com/articles/s41...
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Ingo Greger
5 months ago
Happy about our new paper in Nature
rdcu.be/eukUB
The GluA3 structure provides a framework for understanding this disease-prone glutamate receptor - novel interfaces will provide targets for modulator development
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Augustinas Silale
Florian Wollweber
5 months ago
After 5 amazing years
@pilhoferlab.bsky.social
I'm starting my lab
@embl.org
Grenoble this November
embl.org/wollweber
We'll image Asgard archaea and many other strange microbes (
#archaeasky
,
#protistsonsky
..) to understand eukaryogenesis First job ad:
#teamtomo
scientist!🔬❄️
tinyurl.com/2rdu2ze6
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Augustinas Silale
Oli Clarke
5 months ago
1/x New story - the structure of the Vault cap, at 2.3Å! Matching a beautiful preprint from
@sjorsscheres.bsky.social
, we show that the cap of the vault particle has C13 symmetry, in contrast to the 39-fold symmetry of the body. Study lead by talented postdoc
@huanli00.bsky.social
from my group! ⬇️
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Tracy Palmer
6 months ago
Check out our latest preprint! We show that the same antibacterial toxin requires different immunity proteins depending whether it’s intra or extracellular
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Calum H. G. Johnston
6 months ago
Pleased to share a new preprint - a great collaboration with
@jessicaandreani.bsky.social
and the Guerois lab at I2BC, and the Radicella lab at the CEA. Using stuctural modelling, we reveal & validate a 3 protein complex involved in DNA import during transformation.
www.biorxiv.org/content/10.1...
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A tripartite protein complex promotes DNA transport during natural transformation in firmicutes.
Natural genetic transformation is a conserved mechanism of bacterial horizontal gene transfer, which is directed entirely by the recipient cell and facilitates the acquisition of new genetic traits su...
https://www.biorxiv.org/content/10.1101/2025.05.09.652193v1
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Augustinas Silale
Emmanuele Severi
7 months ago
New from David Bolam’s lab at Newcastle University;
www.nature.com/articles/s41...
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A Bacteroides thetaiotaomicron genetic locus encodes activities consistent with mucin O-glycoprotein processing and N-acetylgalactosamine metabolism - Nature Communications
Ndeh et al. show that a genetic locus in the human gut bacterium, Bacteroides thetaiotaomicron, encodes a combination of glycosidases, a glycoprotease and a kinase enabling it to process and metabolis...
https://www.nature.com/articles/s41467-025-58660-2
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Augustinas Silale
Stephen Garrett
7 months ago
Really excited to share this story from Jake in the lab! We have found bacterial protein toxins that can enter Gram positive bacterial cells without the need for a receptor resulting in broad spectrum antibacterial activity.
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Raffaele Ieva
7 months ago
Here our new preprint on the LPS holo-translocon
doi.org/10.1101/2025...
, collaboration with Yves Quentin @JulieMarcoux
@fronzeslab.bsky.social
@pstansfeld.bsky.social
-
@cbitoulouse.bsky.social
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Structural Basis of Lipopolysaccharide Assembly by the Outer Membrane Translocon Holo-Complex
Lipopolysaccharide (LPS) assembly at the surfaces-exposed leaflet of the bacterial outer membrane (OM) is mediated by the OM LPS translocon. An essential transmembrane beta-barrel protein, LptD, and a...
https://doi.org/10.1101/2025.04.10.648201
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Tracy Palmer
7 months ago
And here
jobs.ncl.ac.uk/job/Newcastl...
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Research Associate - Biochemical and structural analysis of bacterial protein toxins
Research Associate - Biochemical and structural analysis of bacterial protein toxins
https://jobs.ncl.ac.uk/job/Newcastle-Research-Associate-Biochemical-and-structural-analysis-of-bacterial-protein-toxins/1191054301/
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Come join the Palmer lab to do great science with great colleagues in a great city!
add a skeleton here at some point
7 months ago
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Jon Marles-Wright
7 months ago
Interested in Engineering Biology and spending a few days in the best city in the world? Designer Biology 2025 is coming to Newcastle: 29-31st July. Abstracts and registration is open:
www.efbiotechnology.org/designerbiol...
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Augustinas Silale
Dr Katherine Duncan
8 months ago
One week left to apply for this BBSRC funded PhD position in the Duncan lab, cosupervised by
@thecopperdoctor.bsky.social
and
@ruamicro.bsky.social
www.findaphd.com/phds/project...
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Antibiotics from the abyss – assessing the impact of deep-sea mining on biodiscovery at Newcastle University on FindAPhD.com
PhD Project - Antibiotics from the abyss – assessing the impact of deep-sea mining on biodiscovery at Newcastle University, listed on FindAPhD.com
https://www.findaphd.com/phds/project/antibiotics-from-the-abyss-assessing-the-impact-of-deep-sea-mining-on-biodiscovery/?p182723
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Tracy Palmer
8 months ago
www.biorxiv.org/content/10.1...
exciting new study on role of disulphide bond formation in secretion and motility in Bacteroidota
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A central, shared role for disulfide bonds in Bacteroidota protein transport and gliding motility
The gliding motility and Type 9 Secretion Systems (T9SSs) of Bacteroidota share a Power Chain that in current models uses a Hub complex to distribute energy to both the T9SS translocon and a moving gl...
https://www.biorxiv.org/content/10.1101/2025.03.12.642685v1
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Charles Winterhalter
8 months ago
Excited to share with you the story that enabled me to start my own lab: what happens when the bacterial DNA replication machinery encounters single-strand discontinuities on template DNA? What is required for break repair and replication restart?
www.biorxiv.org/content/10.1...
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Rescuing bacterial genome replication: essential functions to repair a double-strand break and restart DNA synthesis
Many antibiotics indirectly generate reactive oxygen species (ROS) that can damage bacterial genomes. Oxidised nucleobases become genotoxic when they are targeted for repair through excision, generati...
https://www.biorxiv.org/content/10.1101/2025.02.28.640380v1
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Alek Kovalenko
9 months ago
Very exciting to talk at the OxBacNet meeting held at
@dunnschool.bsky.social
Summarising mine and
@sykhalid.bsky.social
collaboration with
@augustsilale.bsky.social
to investigate a new ExbBD motor structure using molecular dynamics (foreshadowing the manuscript in preparation)
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