I am very excited to announce that a fully funded PhD position is available in my group. Topic: Synergistic coevolution in mono-specific and multi-species microbial consortia Please RT or forward this information to interested candidates. Deadline: 11.01.26 More info: shorturl.at/f1TuF

📢 20 postdoctoral positions (full-time, 4 years) for outstanding female scientists 👩‍🔬 🔬 @univie.ac.at The E-STEEM programme call opens January 7th, 2026 and closes March 3rd, 2026. careers.univie.ac.at/en/postdoc/e... I participate as a host...

Open postdoc position!🚨 Passionate about gut microbes 🦠 and the brain 🧠? We are an interdisciplinary group at the Faculty of Psychology & @cemess.bsky.social 🌍 @univie.ac.at and invite individuals who self-identify as female. Details: 4 years, full-time ➡️ careers.univie.ac.at/en/postdoc/e...

Up to 10 doctoral positions at the Max Planck Institute for Evolutionary Biology now open for application! Start date September 2026. More info here: www.evolbio.mpg.de/imprs

Top #Citations 2025: 9️⃣🧪 @cdiener.com @gibbological.bsky.social et al ( @isbscience.org @medunigraz.at#Citations) present a new method to estimate dietary intake from human stool by detecting food-derived DNA in faecal metagenomes.

📢 New preprint on bioRxiv! We introduce V4-EXT, a revised 16S rRNA V4 primer set that dramatically improves detection of Patescibacteria and other undersampled lineages ✅ 938 samples ✅ More novel ASVs Primer choice matters 👀 www.biorxiv.org/content/10.1... @ppjevac.bsky.social #HuifengHu

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing? We are merging the 🌍 Eur/M.E./Afr and the 🌎 Americas weekly helpdesk. Please join our host @vagkaratzas.bsky.social, nf-core maintainer, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

Come be my colleague at University of Hawaiʻi at Mānoa. We're hiring an assistant professor in Ocean Biogeochemical Modeling. 🌊

📣 Join us for the 2025 @isbscience.org Virtual Microbiome Symposium, focused on "Gut Microbial Metabolites and Their Impact on Host Systems". co-director - @flash-point.bsky.social 🦠💥 It's free, & we have an amazing line-up of speakers! Dec. 12th. Please share! isbscience.org/2025-isb-vir...

Dr. Nick Quinn-Bohmann will present a Keynote Talk at this year's Future of the Microbiome Winter Summit (Nov. 18-20). He'll talk about his work on using community-scale metabolic modeling to design personalized, microbiome-informed interventions. futureofmicrobiome.com/winter-summi...

Less than a week remains to apply to this exciting PhD position and join my team at Osnabrück University 👇

🧬 🦠 🏙️ Urban vs rural lifestyles create dramatically different gut microbiomes. But how do these different gut microbiomes affect the host? Excited to share our new paper: www.biorxiv.org/content/10.1...

LorBin: efficient binning of long-read metagenomes by multiscale adaptive clustering and evaluation. #LongRead #Metagenomics #MAGs #BinningMethods #UnsupervisedBinning @natcomms.nature.com www.nature.com/articles/s41...

Great to see this finally published! Metalog: curated and harmonised contextual data for global metagenomics samples now out in @narjournal.bsky.social academic.oup.com/nar/advance-...

Can you take a quarter cup of composite sewage, simply ask ‘what’s in there?’, and find out all of the pathogens circulating in that community? That is the question we asked in our latest pre-print. Turns out you can. 1/ www.medrxiv.org/content/10.1...

Looks interesting 👀: Distinguishing diet- and microbe-derived metabolites in the human gut microbiomejournal.biomedcentral.com/articles/10....

Come and do a PhD with me! Are you looking for a PhD project at the intersection of #microbiome and #food science? This project, in collaboration with ADM milling, will explore novel microbiome targeted food ingredients

Thinking about a postdoc in microbiome science? Our lab at the MPI for Biology (Tübingen) builds on the culture I established at Cornell: collaborative, creative, and internationally diverse. Postdocs lead their own projects with secure funding. Join us! #PostdocJobs #HostMicrobe #AcademicJobs

On Friday, Episode #110 of #MattersMicrobial became available. The brilliant Dr. Sean Gibbons joined the #QualityQuorum to describe what the microbiome can tell us about numbers, nutrients, and health. I learned so much. Sean is the #MicrobiomeWhisperer. @microbe.tv youtu.be/wdwTma0gV4k?...

This morning, @isbscience.org's Dr. Mary Brunkow was awarded the 2025 Nobel Prize in Physiology or Medicine! Dr. Brunkow shares the award with Fred Ramsdell and Shimon Sakaguchi. Read the press release here: www.nobelprize.org/.../medicine.... What a tremendous honor! Congratulations!

Excited to share our @cp-cellhostmicrobe.bsky.social led by Magda showing how Bif has co-evolved with different animal hosts 🐒🐭🐷🐦 Key takeaways: 🔹 Host ancestry + diet shape Bif evolution 🔹 Mammals enriched for carb-busting enzymes 🔹 Untapped diversity in non-human hosts = new probiotic potential

Fecal filtrate is less effective than donor stool (FMT) for the treatment of C. difficile recurrence. Now shown in a multicentre trial, out today in @lancetgastrohep.bsky.social . Congratulations to Dina Kao @ualberta.bsky.social & team! Gift link: authors.elsevier.com/c/1lphg8nByr...

New to @nextflow.io?✨Join us for Nextflow Training all of next week! Work through instructor-led videos and hands-on exercises at your own pace. Plus, the chance to earn an official completion certificate. 🎓 👉 Register now: hubs.la/Q03Jf_Zp0

The next @nextflow.io Training Week is coming up - September 2025 📆 Grab the opportunity to book some time in your calendar and pester some of the nice Seqera folks who will be around to help out in the training office hours 😊

💥Personalized C. difficile colonization risk prediction and probiotic therapy assessment in the human gut💥 I'm very excited about this work, driven by Alex Carr & co-supervised by @cdiener.com @cp-cellsystems.bsky.social @isbscience.org @nitinbaliga.bsky.social www.cell.com/cell-systems... 🧵...

Out in @natbiotech.nature.com: Metagenome taxonomy profilers usually ignore unknown species. SingleM is an accurate profiler which doesn't, even detecting phyla with no MAGs. Profiles of 700,000 metagenomes at sandpiper.qut.edu.au. A 🧵

New RESOURCE! Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria @arzamasovalex.bsky.social @drlarsbode.bsky.social Andrei Osterman, Jeff Gordon & co #microbiomesky #microsky www.nature.com/articles/s41...

@kl-fil.bsky.social will be presenting her work in our lab tomorrow in the @femsmicro.org poster session. Definitely check it out if you're there! 🦠🧬+💻=♥️

This is my first time attending a big @femsmicro.org congress #FEMS2025 (thank you @cdiener.com 💚). I wanted to experience the FEMS congress since my baby PhD days in 2019 but did not get a chance to until now. It is absolutely exceeding my expectations, and I will tell you exactly why in the 🧵

Just published in @femsjournals.bsky.social🦠: Akkermansia muciniphila, Ruminococcus torques and Bacteroides thetaiotaomicron differ in their preferences for degradation of porcine gastric mucin O- and N-glycans. #microsky #microbiomesky #glycotime @mib-wur.bsky.social doi.org/10.1093/fems...

Bluesky is now giving notifications for likes on reposts to the reposter. Excited that this may help folks recognize how high engagement is here. Just a reminder that reposts are critical here without the algorithm. Late reposts are especially helpful for those who log in infrequently.

CeMESS is hiring! Join us at the Division of Terrestrial Ecosystem Research (@ter-cemess.bsky.social) as Full Professor of SOIL ECOSYSTEMS AND GLOBAL CHANGE. Collaborate across a leading institution in microbiome science and environmental research. 🔗 Learn more: cemess.univie.ac.at/news/detail-...

Today, June 27, marks World Microbiome Day! We're celebrating with the inaugural Austrian Microbiome Research Awards. Congrats to Cornelia Rottensteiner @cornelia-cr.bsky.social @cemess.bsky.social @univie.ac.at, Charlotte Neumann @medunigraz.at, and Daniela Wöber @AIT. @fwf-at.bsky.social Details👇

Our latest preprint is online @medrxivpreprint.bsky.social: "‪Metabolic modeling reveals determinants of synbiotic efficacy in a human intervention trial." www.medrxiv.org/content/10.1... Amazing work here by postdoc Nick Quinn-Bohmann @isbscience.org 🧵...

📢 Big day for archaeal microbiology! Today, we jointly shed light on the mysterious world of archaeal extracellular vesicles from human gut archaea - published in @natcomms.nature.com ‬ in parallel with our precious colleagues around @mkrupovic.bsky.social 🇦🇹🤝🇫🇷.

We are launching the Austrian Microbiome Research Awards 2025! 🇦🇹🔬 Calling all Austrian microbiome researchers to submit your best MSc/PhD thesis or research paper by June 7, more info: microplanet.at @fwf-at.bsky.social @univie.ac.at

Nice blog post by @charlottetolonen.bsky.social from a couple of weeks ago about how to use conda for #bioinformatics without running afoul of anaconda licensing: blog.fulcrumgenomics.com/p/anaconda-l... 🧬 🖥️

A stich in time saves nine. New paper in @nature.com shows you gotta keep eating those fibres 🥦🥬🥗, an FMT later might not be as great! 💩 #MicroSky #MicrobiomeSky www.nature.com/articles/s41...

The Gulbenkian Institute of Molecular Medicine (GIMM) is one of the best research institutes in Portugal. It's currently recruiting for three Group Leaders (junior or senior) across different areas, including systems biology and bioinformatics. gimm.pt/jobs/open-ca...

Come and work with me! The Nature Micro team is expanding and we're looking for someone to champion microbial ecology, plant micro & related areas for the journal Knowledge of microbial ecology/plant micro is desirable but we're open to applications from all microbiologists Link below 👇

Most bacterial gene families are biased toward specific chromosomal positions www.science.org/doi/abs/10.1... #jcampubs

In a review led by @gilbertjacka.bsky.social in @natmedicine.bsky.social we highlight the state of clinical translation in microbiome research. We have gone from basic discoveries to FDA-approved therapies in <20 years, on par with the pace of mRNA vaccine development. www.nature.com/articles/s41...

Me and a few of my mates got together and wrote a review on the current state of clinical translation of microbiome research. A great summary of the state of the art for microbiome research. www.nature.com/articles/s41...

Microbial community-scale metabolic models (MCMMs) map gut microbiome composition & dietary context to functional outputs, at scale. Here, we describe these emerging tools & their utility to both basic & translational microbiome research. @natmicrobiol.nature.com www.nature.com/articles/s41...

Excited to share our preprint on the South American MicroBiome Archive (saMBA)! 🌎🦠. We analysed one of the regions with the fewest microbiome samples but some of the highest biodiversities. 📄: shorturl.at/Lmvp5 🧵: What did we find—and why? Find out 👇 #microbiome #gut-microbiome (1/8)

CoverM is published! CoverM: Read alignment statistics for metagenomics academic.oup.com/bioinformati... #jcampubs

1/7: Proud to present our next study on aging microbiome - a massive experimental effort led by the Rosenstiel and Sommer labs and contributions by @sci-witch.bsky.social. @uni-kiel.de @crc1182.bsky.social microbiomejournal.biomedcentral.com/articles/10....

New paper! We analyzed gut #microbiomes of 250+ individuals (ages 19–109). #Centenarians often show a high-methanogen “human cow” phenotype 🐄, with #Methanobrevibacter smithii dominance and youth-like archaeal profiles. #Archaea may stabilize networks in aging. Link: rdcu.be/egk03 @archaeasky

Interesting new mouse study on the microbiome & aging, out in @naturemicrobiol.bsky.social "Gut metagenomes reveal interactions between dietary restriction, ageing and the microbiome in genetically diverse mice" www.nature.com/articles/s41...