Pipeline release! nf-core/viralmetagenome v1.1.3 - v1.1.3 - Cerulean Crane ! Please see the changelog: https://github.com/nf-core/viralmetagenome/releases/tag/1.1.3

Pipeline release! nf-core/mcmicro v2.0.0 - 2.0.0! Please see the changelog: https://github.com/nf-core/mcmicro/releases/tag/2.0.0

New blog post! Maintainers Minutes: May - June 2026 https://nf-co.re/blog/2026/maintainers-minutes-2026-06-26/

Pipeline release! nf-core/sarek v3.9.0 - 3.9.0 - Sarvesjåhkå! Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.9.0

Pipeline release! nf-core/pairgenomealign v3.0.1 - nf-core/pairgenomealign v3.0.1 – Tokoroten! Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/3.0.1

Pipeline release! nf-core/rnadnavar v1.0.0 - 1.0.0 - restless hermit! Please see the changelog: https://github.com/nf-core/rnadnavar/releases/tag/1.0.0

Pipeline release! nf-core/funcscan v4.0.0 - v4.0.0 - Chinese Baozi - 2026-06-27! Please see the changelog: https://github.com/nf-core/funcscan/releases/tag/4.0.0

Pipeline release! nf-core/scnanoseq v1.3.0 - nf-core/scnanoseq v1.3.0 - Steel Elephant! Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.3.0

Pipeline release! nf-core/longraredisease v1.0.0 - 1.0.0! Please see the changelog: https://github.com/nf-core/longraredisease/releases/tag/1.0.0

Pipeline release! nf-core/pairgenomealign v3.0.0 - nf-core/pairgenomealign v3.0.0 – Tokoroten! Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/3.0.0

Pipeline release! nf-core/metatdenovo v1.4.0 - Download improvements and more! Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.4.0

Pipeline release! nf-core/pacvar v1.1.0 - Neon tetra! Please see the changelog: https://github.com/nf-core/pacvar/releases/tag/1.1.0

Pipeline release! nf-core/raredisease v3.1.1 - 3.1.1 - Princess Peach (patch)! Please see the changelog: https://github.com/nf-core/raredisease/releases/tag/3.1.1

Pipeline release! nf-core/demo v1.2.0 - nf-core/demo 1.2.0 - Sleeping Kiwi! Please see the changelog: https://github.com/nf-core/demo/releases/tag/1.2.0

Join the @nextflow.io community at the nf-core Hackathon in Barcelona this October. 💻 The hackathon is not competitive. It's a collaborative, community-driven event where participants work together toward shared goals.🤝 nf-co.re/events/2026/...

Pipeline release! nf-core/fastquorum v2.0.0 - 2.0.0! Please see the changelog: https://github.com/nf-core/fastquorum/releases/tag/2.0.0

Pipeline release! nf-core/drugresponseeval v1.2.2 - Drugresponseeval 1.2.2 - Pretty Psyduck! Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.2.2

Happening right now: join @ewels.bsky.social in a @nf-co.re #bytesize talk to hear all about our newest feature: monthly Newsletters! nf-co.re/events/2026/...

New blog post! Introducing the nf-core newsletter https://nf-co.re/blog/2026/newsletter-launch/

Pipeline release! nf-core/differentialabundance v2.0.0 - v2.0.0 - 2026-06-23! Please see the changelog: https://github.com/nf-core/differentialabundance/releases/tag/2.0.0

Pipeline release! nf-core/lsmquant v1.0.2 - 1.0.2 - Excited Squid ! Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.2

Pipeline release! nf-core/spatialaxe v1.0.0 - 1.0.0! Please see the changelog: https://github.com/nf-core/spatialaxe/releases/tag/1.0.0

Pipeline release! nf-core/ampliseq v2.18.0 - Ampliseq Version 2.18.0! Please see the changelog: https://github.com/nf-core/ampliseq/releases/tag/2.18.0

Pipeline release! nf-core/raredisease v3.1.0 - 3.1.0 - Princess Peach! Please see the changelog: https://github.com/nf-core/raredisease/releases/tag/3.1.0

Pipeline release! nf-core/phyloplace v2.0.1 - Documentation improvements, software updates! Please see the changelog: https://github.com/nf-core/phyloplace/releases/tag/2.0.1

Pipeline release! nf-core/taxprofiler v2.0.1 - v2.0.1 - Crazy Corgi Patch! Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.1

Pipeline release! nf-core/drugresponseeval v1.2.1 - Drugresponseeval 1.2.1 - Sleepy Snorlax! Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.2.1

Pipeline release! nf-core/pairgenomealign v2.3.0 - nf-core/pairgenomealign v2.3.0 – Umi budou! Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.3.0

Pipeline release! nf-core/proteinfamilies v2.4.0 - Titanium Falcon! Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.4.0

Pipeline release! nf-core/createpanelrefs v1.0.0 - nf-core/createpanelrefs 1.0.0 - Hell's Gate! Please see the changelog: https://github.com/nf-core/createpanelrefs/releases/tag/1.0.0

Pipeline release! nf-core/airrflow v5.1.0 - 5.1.0 - Ventus! Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/5.1.0

Pipeline release! nf-core/pixelator v4.1.2 - nf-core/pixelator 4.1.2! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.2

Pipeline release! nf-core/rnavar v1.3.0 - nf-core/rnavar 1.3.0 - Silent Nostromo! Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.3.0

Pipeline release! nf-core/viralmetagenome v1.1.2 - v1.1.2 - Blush Bunting! Please see the changelog: https://github.com/nf-core/viralmetagenome/releases/tag/1.1.2

Pipeline release! nf-core/lsmquant v1.0.1 - Excited Squid Patch! Please see the changelog: https://github.com/nf-core/lsmquant/releases/tag/1.0.1

Pipeline release! nf-core/rnafusion v4.1.3 - 4.1.3! Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.3

Pipeline release! nf-core/magmap v1.1.0 - nf-core/magmap v1.1.0! Please see the changelog: https://github.com/nf-core/magmap/releases/tag/1.1.0

Pipeline release! nf-core/pixelator v4.1.1 - nf-core/pixelator 4.1.1! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.1

Pipeline release! nf-core/pixelator v4.1.0 - nf-core/pixelator 4.1.0! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.1.0

New blog post! Why parameters are strings all of a sudden https://nf-co.re/blog/2026/parameter-types/

Pipeline release! nf-core/pixelator v4.0.0 - nf-core/pixelator 4.0.0! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/4.0.0

TaxProfiler, the @nf-co.re #metagenomics pipeline had a new major release, adding multiple cool new classifiers (metacache, sylph and melon)! Great work by Sofia, @lilianderssonli.bsky.social , @jfy133.genomic.social.ap.brid.gy and others! 🙌 github.com/nf-core/taxp...

Pipeline release! nf-core/pairgenomealign v2.2.3 - nf-core/pairgenomealign v2.2.3 – Reitou mikan! Please see the changelog: https://github.com/nf-core/pairgenomealign/releases/tag/2.2.3

Pipeline release! nf-core/mhcquant v3.2.0 - 3.2.0 - Solitude! Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.2.0

"Nextflow has allowed us to architect a computational ecosystem where every analytical step is versioned and reproducible across years of data collection" - Mel Nuesch, Head of HPC Platform Discover how @drfzberlin.bsky.social are transforming precision medicine with Nextflow. 📚

Seqera Co-Scientist is your collaborative partner that combines domain-specific intelligence with complete stack visibility to accelerate scientific discovery🧬 It understands scientific context, reasons with you, and executes with intelligence, making it easier to develop, debug, and deploy at scale

Pipeline release! nf-core/rnafusion v4.1.2 - 4.1.2! Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.2

Pipeline release! nf-core/rnafusion v4.1.1 - 4.1.1! Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/4.1.1

Cloud batch schedulers were designed for a static world.☁️ But the cloud isn't static. So why are we still paying for compute as if it were? Seqera Intelligent Compute cut RNA-Seq compute costs by more than half vs optimized AWS Batch. Learn how: hubs.la/Q04gzhnR0

Pipeline release! nf-core/bamtofastq v2.2.1 - 2.2.1 - Radia Perlman! Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.1