Pipeline release! nf-core/proteinfamilies v2.2.0 - Mercury Spider! Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.2.0

New blog post! The Mass Spectrometry Proteomics Special Interest Group https://nf-co.re/blog/2025/sig-massspec-proteomics-introduction/

Pipeline release! nf-core/pixelator v2.3.0 - nf-core/pixelator 2.3.0! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.3.0

Pipeline release! nf-core/methylseq v4.2.0 - Tapus Maximus! Please see the changelog: https://github.com/nf-core/methylseq/releases/tag/4.2.0

Pipeline release! nf-core/rnaseq v3.22.2 - nf-core/rnaseq v3.22.2 - Perfect Palladium Penguin! Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.2

Pipeline release! nf-core/sarek v3.7.1 - 3.7.1 - Buollámtjåhkka! Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.1

Pipeline release! nf-core/oncoanalyser v2.3.0 - 2.3.0 - Spotted Nightjar! Please see the changelog: https://github.com/nf-core/oncoanalyser/releases/tag/2.3.0

New blog post! Maintainers Minutes: November 2025 https://nf-co.re/blog/2025/maintainers-minutes-2025-11-28/

Pipeline release! nf-core/rnaseq v3.22.1 - nf-core/rnaseq v3.22.1 - Polished Palladium Penguin! Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1

Pipeline release! nf-core/viralmetagenome v1.0.1 - 1.0.1 - Khaki Quail! Please see the changelog: https://github.com/nf-core/viralmetagenome/releases/tag/1.0.1

Pipeline release! nf-core/mag v5.3.0 - mag 5.3.0 - Rainbow Rattlesnake! Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0

Pipeline release! nf-core/rnavar v1.2.2 - nf-core/rnavar 1.2.2 - Gray Red Tail! Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2

Pipeline release! nf-core/sarek v3.7.0 - 3.7.0 - Saltoluokta! Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.0

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing? We are merging the 🌍 Eur/M.E./Afr and the 🌎 Americas weekly helpdesk. Please join our nf-core maintainers, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

Pipeline release! nf-core/variantbenchmarking v1.4.0 - Thin Yasar! Please see the changelog: https://github.com/nf-core/variantbenchmarking/releases/tag/1.4.0

Pipeline release! nf-core/riboseq v1.2.0 - nf-core/riboseq v1.2.0 - Mercury Spider! Please see the changelog: https://github.com/nf-core/riboseq/releases/tag/1.2.0

"Using open source tools like Nextflow and @nf-co.re allows organizations to run best practice pipelines off the shelf, which are reproducible and can be executed on various infrastructures.” Check out ELIXIR's report on how open source software drives innovation in life sciences research. ⬇️

Pipeline release! nf-core/phaseimpute v1.1.0 - 1.1.0 - Purple Beagle! Please see the changelog: https://github.com/nf-core/phaseimpute/releases/tag/1.1.0

Pipeline release! nf-core/magmap vv1.0.0 - magmap v1.0.0! Please see the changelog: https://github.com/nf-core/magmap/releases/tag/v1.0.0

Pipeline release! nf-core/rnaseq v3.22.0 - nf-core/rnaseq v3.22.0 - Palladium Penguin! Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.0

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing? We are merging the 🌍 Eur/M.E./Afr and the 🌎 Americas weekly helpdesk. Please join our host @vagkaratzas.bsky.social, nf-core maintainer, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

Pipeline release! nf-core/proteinfamilies v2.1.0 - Iron Goat! Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.1.0

Pipeline release! nf-core/taxprofiler v1.2.5 - v1.2.5 - Bouncy Basenji Patch! Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/1.2.5

Pipeline release! nf-core/epitopeprediction v3.1.0 - 3.1.0 - Lustnau! Please see the changelog: https://github.com/nf-core/epitopeprediction/releases/tag/3.1.0

Pipeline release! nf-core/methylong v2.0.0 - 3! Please see the changelog: https://github.com/nf-core/methylong/releases/tag/2.0.0

New blog post! Topic: Topics https://nf-co.re/blog/2025/version_topics/

New blog post! nf-core/tools - 3.5.0 https://nf-co.re/blog/2025/tools-3_5_0/

Pipeline release! nf-core/rnafusion v3.0.1b - 3.0.1b! Please see the changelog: https://github.com/nf-core/rnafusion/releases/tag/3.0.1b

New blog post! The nf-core roadmap for adopting the new Nextflow syntax https://nf-co.re/blog/2025/nextflow_syntax_nf-core_roadmap/

Welcome to the @nf-co.re Hackathon in Barcelona!🙌 All experience levels joining forces for collaborative pipeline development, community connection, and plenty of fun along the way. Let the coding and collaboration begin! #NextflowSummit

So glad that a feature I've wanted, and then worked on, is finally out! Run all the bin QC tools now!

Pipeline release! nf-core/detaxizer v1.3.0 - detaxizer 1.3.0 - rausgruschdla! Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.3.0

Pipeline release! nf-core/createtaxdb v2.0.0 - v2.0.0 - Charming Chaac - [2025-11-14]! Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/2.0.0

🧑🏾‍💻 Need help with #nfcore #nextflow (#bioinformatics) pipelines, running or developing? 📅 We host regular helpdesks for different TZs! - 🌍 Eur/M.E./Afr: Thurs. @ 10:00-11:00 CET (Today!) - 🌏 Asia-Pacific: Weds. @ 15:00 NZDT - 🌎 Americas: Tues. @ 14:00 ET Join the nf-core slack for more details!

Pipeline release! nf-core/mag v5.2.0 - mag 5.2.0 - Puce Pangolin! Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.2.0

Pipeline release! nf-core/viralmetagenome v1.0.0 - Willowish Hawk! Please see the changelog: github.com/nf-core/vira...

Pipeline release! nf-core/scrnaseq v4.1.0! Please see the changelog: github.com/nf-core/scrn...

Pipeline release! nf-core/viralrecon v3.0.0 - Waterdog Hibiscus! Please see the changelog: github.com/nf-core/vira...

Pipeline release! nf-core/molkart v1.2.0 - Cartography Castle! Please see the changelog: github.com/nf-core/molk...

Pipeline release! nf-core/reportho v1.1.0 - Reliable Rudder! Please see the changelog: github.com/nf-core/repo...

Pipeline release! nf-core/proteinfamilies v2.0.0 - Tin Shark! Please see the changelog: github.com/nf-core/prot...

Pipeline release! nf-core/pixelator v2.2.0 - nf-core/pixelator 2.2.0! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/2.2.0

Pipeline release! nf-core/demultiplex v1.7.0 - 1.7.0! Please see the changelog: https://github.com/nf-core/demultiplex/releases/tag/1.7.0

Pipeline release! nf-core/mag v5.1.0 - mag 5.1.0 - Platinum Pudu! Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.1.0

Pipeline release! nf-core/sarek v3.6.1 - Sarek 3.6.1 - Sjnjierák! Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.6.1

Between September 22nd and 26th, the nf-core core team gathered in Stockholm to tackle the big questions facing our growing community.

New blog post! nf-core core team retreat - September 2025 https://nf-co.re/blog/2025/retreat-2025/

Pipeline release! nf-core/bacass v2.5.0 - nf-core/bacass v2.5.0! Please see the changelog: https://github.com/nf-core/bacass/releases/tag/2.5.0

New blog post! nf-core/tools - 3.4.0 https://nf-co.re/blog/2025/tools-3_4_0/

Last chance! Let's gooooo! 🚀