nf-core
@nf-co.re
📤 2058
📥 15
📝 476
A community effort to collect a curated set of analysis pipelines built using Nextflow.
reposted by
nf-core
Seqera
3 days ago
Cloud batch schedulers were designed for a static world.☁️ But the cloud isn't static. So why are we still paying for compute as if it were? Seqera Intelligent Compute cut RNA-Seq compute costs by more than half vs optimized AWS Batch. Learn how:
hubs.la/Q04gzhnR0
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Pipeline release! nf-core/bamtofastq v2.2.1 - 2.2.1 - Radia Perlman! Please see the changelog:
https://github.com/nf-core/bamtofastq/releases/tag/2.2.1
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Release 2.2.1 - Radia Perlman · nf-core/bamtofastq
What's Changed Fix nextflow lint and update all modules by @famosab in #135 Template update for nf-core/tools v4.0.2 by @nf-core-bot in #138 Update all modules, adjust fasta_fai input channels, re...
https://github.com/nf-core/bamtofastq/releases/tag/2.2.1
4 days ago
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Pipeline release! nf-core/raredisease v3.0.0 - 3.0.0 - Mario! Please see the changelog:
https://github.com/nf-core/raredisease/releases/tag/3.0.0
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Release 3.0.0 - Mario · nf-core/raredisease
What's Changed nf-test for subworkflows - I by @ramprasadn in #695 Important! Template update for nf-core/tools v3.3.2 by @nf-core-bot in #712 Resolve inconsistencies in schema JSON definitions by...
https://github.com/nf-core/raredisease/releases/tag/3.0.0
5 days ago
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Pipeline release! nf-core/proteinannotator v1.1.0 - Crimson Quokka! Please see the changelog:
https://github.com/nf-core/proteinannotator/releases/tag/1.1.0
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Release Crimson Quokka · nf-core/proteinannotator
Added #90 - Added the option to download and use the latest metagRoot HMM library (or use path to an existing one) for domain annotation. (by @angelphanth) #87 - Added the option to download and u...
https://github.com/nf-core/proteinannotator/releases/tag/1.1.0
10 days ago
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Pipeline release! nf-core/rnaseq v3.26.0 - nf-core/rnaseq v3.26.0 - Chromium Cuttlefish! Please see the changelog:
https://github.com/nf-core/rnaseq/releases/tag/3.26.0
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Release nf-core/rnaseq v3.26.0 - Chromium Cuttlefish · nf-core/rnaseq
What's Changed Bump version after release 3.25.0 by @pinin4fjords in #1821 Patch release 3.25.1: trimgalore same-workdir-retry cleanup by @pinin4fjords in #1823 docs(changelog): restore #1821 entr...
https://github.com/nf-core/rnaseq/releases/tag/3.26.0
10 days ago
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reposted by
nf-core
European Virus Bioinformatics Center
10 days ago
⏰Registration for the satellite hackathon at ViBioM 2026 closes tomorrow! 👉
evbc.uni-jena.de/events/vibio...
add a skeleton here at some point
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Pipeline release! nf-core/proteinfamilies v2.3.0 - Iron Wolf! Please see the changelog:
https://github.com/nf-core/proteinfamilies/releases/tag/2.3.0
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Release Iron Wolf · nf-core/proteinfamilies
Added #159 - Added functionality to generate a HMM library file (compressed) with its respective final protein families HMMs, per each input sample row. Family library files can be found at hmm/li...
https://github.com/nf-core/proteinfamilies/releases/tag/2.3.0
11 days ago
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Pipeline release! nf-core/bacass v2.6.0 - nf-core/bacass v2.6.0 - Crimson Titanium Seahorse! Please see the changelog:
https://github.com/nf-core/bacass/releases/tag/2.6.0
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Release nf-core/bacass v2.6.0 - Crimson Titanium Seahorse · nf-core/bacass
v2.6.0 nf-core/bacass - "Crimson Titanium Seahorse" 2026/05/05 Changed #299 Update GunZip and Dfast version to prevent conda issues in 2.6.0 release AND Fix precommit gitCI test #297 fix conda env...
https://github.com/nf-core/bacass/releases/tag/2.6.0
12 days ago
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Pipeline release! nf-core/createtaxdb v3.0.0 - v3.0.0 - Mystical Medusa - [2026-04-30]! Please see the changelog:
https://github.com/nf-core/createtaxdb/releases/tag/3.0.0
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Release v3.0.0 - Mystical Medusa - [2026-04-30] · nf-core/createtaxdb
Added #169 Have KAIJU_MKFMI module also export relevant taxdump files for downstream processes (by @jfy133) #170 Publish sometimes generated unmapped.txt file for Kraken2 databases (❤️ to @softsta...
https://github.com/nf-core/createtaxdb/releases/tag/3.0.0
17 days ago
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reposted by
nf-core
Nextflow
17 days ago
What a collaborative few days of
#Nextflow
Training and
@nf-co.re
Hackathon here in Boston!🌏Congrats to our rubber duck winners.🦆Huge thanks to everyone for making such a great event!
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reposted by
nf-core
Seqera
19 days ago
We're so excited to be back in Boston for
#NextflowSummit
2026!🇺🇸 Just a few hours to go until we kick off
@nextflow.io
training and the
@nf-co.re
hackathon!💻Our team is ready for 2 days of learning, hacking and collaboration. Let's go!
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reposted by
nf-core
Seqera
18 days ago
Day 2 of
@nextflow.io
training and the
@nf-co.re
community hackathon is underway! After a fantastic first day of learning and collaborating, we're back and ready to build.
#NextflowSummit
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New blog post! Welcoming new members to the nf-core core team
https://nf-co.re/blog/2026/new-core-members/
18 days ago
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reposted by
nf-core
Nextflow
19 days ago
The
@nf-co.re
Hackathon has officially kicked off here in Boston!🎉 Whether you're an experienced Nextflow developer or just getting started, this is where great pipelines and even better connections are made. Time to build something amazing together!
#NextflowSummit
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reposted by
nf-core
Nextflow
19 days ago
A fantastic end to day 1 of the
@nf-co.re
hackathon! Great to see progress across projects including cellpainting, sarek parabricks integration, dragen pipeline initiation, and crispr!🤩Looking forward to more updates and progress tomorrow!👏
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reposted by
nf-core
Nextflow
19 days ago
Less than 1 hour to go until the community
@nf-co.re
hackathon begins here in Boston!🍏The team are ready to go.
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reposted by
nf-core
Nextflow
19 days ago
The
@seqera.io
team are getting ready for the beginners and advanced Nextflow training sessions here at the
#NextflowSummit
Boston! Excited to see so many people here eager to learn🎓
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New blog post! nf-core/tools - 4.0.0
https://nf-co.re/blog/2026/tools-4_0_0/
19 days ago
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reposted by
nf-core
Nextflow
20 days ago
The
#NextflowSummit
by
@seqera.io
is almost here!🎤 Don't miss the keynote by
@tommytang.bsky.social
, Director of Bioinformatics at
@astrazeneca.com
, who is giving a talk on reproducible bioinformatics in the age of AI! 👀 Watch the livestream later this week:
hubs.la/Q04dCDS60
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New blog post! Maintainers Minutes: January - April 2026
https://nf-co.re/blog/2026/maintainers-minutes-2026-04-27/
20 days ago
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Pipeline release! nf-core/rnaseq v3.25.0 - nf-core/rnaseq v3.25.0 - Plutonium Pangolin! Please see the changelog:
https://github.com/nf-core/rnaseq/releases/tag/3.25.0
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Release nf-core/rnaseq v3.25.0 - Plutonium Pangolin · nf-core/rnaseq
What's Changed Bump version to 3.25.0dev; fix SortMeRNA sample name in MultiQC by @pinin4fjords in #1781 refactor: delocalise GTF_FILTER to nf-core custom/gtffilter by @pinin4fjords in #1782 fix: ...
https://github.com/nf-core/rnaseq/releases/tag/3.25.0
23 days ago
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Pipeline release! nf-core/variantbenchmarking v1.5.0 - Vegetarian Han! Please see the changelog:
https://github.com/nf-core/variantbenchmarking/releases/tag/1.5.0
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Release Vegetarian Han · nf-core/variantbenchmarking
What's Changed Replace local modules: SORT_BED, REFORMAT_HEADER, VARIANT_EXTRACTOR, bcftools, tabix, fix_vcf_prefix, create_datavzrd_input @georgiakes and @kubranarci #267, #268 #292 #287 Strict ...
https://github.com/nf-core/variantbenchmarking/releases/tag/1.5.0
25 days ago
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Pipeline release! nf-core/demultiplex v1.7.1 - 1.7.1! Please see the changelog:
https://github.com/nf-core/demultiplex/releases/tag/1.7.1
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Release 1.7.1 · nf-core/demultiplex
What's Changed Bump to v1.7.1dev by @SPPearce in #354 Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot in #355 update MultiQC and restore missing file from snapshots by @maxulys...
https://github.com/nf-core/demultiplex/releases/tag/1.7.1
30 days ago
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Pipeline release! nf-core/ampliseq v2.17.0 - Ampliseq Version 2.17.0! Please see the changelog:
https://github.com/nf-core/ampliseq/releases/tag/2.17.0
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Release Ampliseq Version 2.17.0 · nf-core/ampliseq
nf-core/ampliseq version 2.17.0 - 2026-04-15 Summary of changes sample sheet standardization (legacy sample sheet still allowed) added Decontam for decontamination added ITSxRust alongside ITSx im...
https://github.com/nf-core/ampliseq/releases/tag/2.17.0
about 1 month ago
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reposted by
nf-core
Nextflow
about 1 month ago
Nextflow Training Week by
@seqera.io
is back on May 11-15, 2026!💻 It's bigger and better than ever, with beginners and advanced tracks! 🎓 Learn at your own pace with on-demand videos, live support from
#Nextflow
experts, and earn a certificate.
hubs.la/Q04blYwg0
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Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi! Please see the changelog:
https://github.com/nf-core/taxprofiler/releases/tag/2.0.0
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Release v2.0.0 - Crazy Corgi · nf-core/taxprofiler
Added #682 Added metacache classifier and improved nf-tests (added by @sofstam) #559 Profiling of long reads with motus (added by @LilyAnderssonLee and @sofstam ) #591 Add options to enable the ab...
https://github.com/nf-core/taxprofiler/releases/tag/2.0.0
about 1 month ago
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Pipeline release! nf-core/lsmquant v1.0.0 - 1.0.0 - Excited Squid! Please see the changelog:
https://github.com/nf-core/lsmquant/releases/tag/1.0.0
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Release 1.0.0 - Excited Squid · nf-core/lsmquant
Initial release of nf-core/lsmquant, created with the nf-core template. nf-core/lsmquant is a bioinformatics pipeline that performs preprocessing and analysis of light-sheet microscopy images of ti...
https://github.com/nf-core/lsmquant/releases/tag/1.0.0
about 1 month ago
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Pipeline release! nf-core/lsmquant v1.0.0 - 1.0.0 - Excited Squid! Please see the changelog:
https://github.com/nf-core/lsmquant/releases/tag/1.0.0
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Release 1.0.0 - Excited Squid · nf-core/lsmquant
Initial release of nf-core/lsmquant, created with the nf-core template. nf-core/lsmquant is a bioinformatics pipeline that performs preprocessing and analysis of light-sheet microscopy images of ti...
https://github.com/nf-core/lsmquant/releases/tag/1.0.0
about 1 month ago
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🧑💻 Final reminder of this hybrid(!) one-day
#virus
#bioinformatics
hackathon coorganised with ourselves and the
@nfdi4microbiota.bsky.social
#VirJenDB
project! Deadline is end of this week to register your interested (April 17th)! Work on one of the proposed projects, or propose your own!
add a skeleton here at some point
about 1 month ago
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Let's do it! 🤩
add a skeleton here at some point
about 1 month ago
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The nf-core Hackathon in Boston is happening in just over 2 weeks! 💻Join us April 28–29 for two days of collaborative hacking.🎟️ Register now:
hubs.la/Q04brb4c0
Whether you want to add new features to existing pipelines, work on tooling, or tackle community initiatives — there's something for you.
about 1 month ago
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New blog post! Introducing nf-core docs version 2
https://nf-co.re/blog/2026/docs-v2/
about 1 month ago
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Pipeline release! nf-core/rnaseq v3.24.0 - nf-core/rnaseq v3.24.0 - Selenium Seahorse! Please see the changelog:
https://github.com/nf-core/rnaseq/releases/tag/3.24.0
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Release nf-core/rnaseq v3.24.0 - Selenium Seahorse · nf-core/rnaseq
What's Changed fix: always set ID/SM read group tags; bump version to 3.24.0dev by @pinin4fjords in #1740 fix: always skip igenomes_base validation by @pinin4fjords in #1745 fix: update bowtie2 mo...
https://github.com/nf-core/rnaseq/releases/tag/3.24.0
about 1 month ago
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Pipeline release! nf-core/variantprioritization v1.0.0 - 1.0.0 - Jane Addams! Please see the changelog:
https://github.com/nf-core/variantprioritization/releases/tag/1.0.0
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Release 1.0.0 - Jane Addams · nf-core/variantprioritization
Initial release of nf-core/variantprioritization, created with the nf-core template. This is a bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels ...
https://github.com/nf-core/variantprioritization/releases/tag/1.0.0
about 1 month ago
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New blog post! From pytest to nf-test: a journey toward native testing
https://nf-co.re/blog/2026/modules-pytest-conversion/
about 1 month ago
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Pipeline release! nf-core/drop v1.0.0 - 1.0.0 - Red Dragon! Please see the changelog:
https://github.com/nf-core/drop/releases/tag/1.0.0
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Release 1.0.0 - Red Dragon · nf-core/drop
Initial release of nf-core/drop, created with the nf-core template.
https://github.com/nf-core/drop/releases/tag/1.0.0
about 2 months ago
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Pipeline release! nf-core/mag v5.4.2 - mag 5.4.2 - Yellow Frog patch! Please see the changelog:
https://github.com/nf-core/mag/releases/tag/5.4.2
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Release mag 5.4.2 - Yellow Frog patch · nf-core/mag
Added #1006 - Add citations and references texts in the utils_nfcore_mag_pipeline subworkflow (by @dialvarezs) Changed #1000 - Update GUNC modules and enable the tool in tests (by @dialvarezs) #...
https://github.com/nf-core/mag/releases/tag/5.4.2
about 2 months ago
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👩🏼💻 Love
#virus
#bioinformatics
? 🤝 Enjoy collaborating with others? 📣 Register interest for the hybrid
#VirJenDB
@nfdi4microbiota.bsky.social
#nfcore
join us for a satellite hybrid
#hackathon
on 17th May! 🛠️ Contribute to or lead your own project! 📅 Deadline for project proposals: April 17th !
add a skeleton here at some point
about 2 months ago
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Pipeline release! nf-core/viralmetagenome v1.1.1 - v1.1.1 - Azure Albatross! Please see the changelog:
https://github.com/nf-core/viralmetagenome/releases/tag/1.1.1
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Release v1.1.1 - Azure Albatross · nf-core/viralmetagenome
Added Template update for nf-core/tools v3.5.2 (#270) (by @Joon-Klaps) Modules update to latest nf-core versions (#271) (by @Joon-Klaps) Update local modules to use topics (#272) (by @Joon-Klaps) ...
https://github.com/nf-core/viralmetagenome/releases/tag/1.1.1
about 2 months ago
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Pipeline release! nf-core/proteinfold v2.0.0 - Montseny Brook Newt! Please see the changelog:
https://github.com/nf-core/proteinfold/releases/tag/2.0.0
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Release Montseny Brook Newt · nf-core/proteinfold
[2.0.0] - 2026-03-27 Enhancements & fixes [#177] - Fix typo in some instances of model preset alphafold2_ptm. [PR #178] - Enable running multiple modes in parallel. [#179] - Produce an interactive...
https://github.com/nf-core/proteinfold/releases/tag/2.0.0
about 2 months ago
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The nf-core Hackathon is coming to Boston on Apr 28-29! 🎉 Collaborate with the community on projects ranging from adding new features to existing
@nextflow.io
pipelines to building entirely new ones. Plus, network with fellow Nextflow developers at the hackathon social 🌎
hubs.la/Q048rnMs0
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Hackathon - April 2026 (Boston)
An in-person hackathon held in Boston
https://hubs.la/Q048rnMs0
about 2 months ago
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🧑💻 Need help with
#nfcore
#nextflow
#bioinformatics
pipelines, running or developing? Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk. Please join our nf-core core/infrastructure member Matthias Hörtenhuber, this Thursday at 14:30 CET | 08:30 ET on
play.workadventu.re/@/nf-core/nf...
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WorkAdventure
Organize your online event in WorkAdventure to recreate spontaneous social interactions. Connect, collaborate and have fun with your teammates and attendees.
https://play.workadventu.re/@/nf-core/nf-core/office
about 2 months ago
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Pipeline release! nf-core/rnafusion v4.1.0 - 4.1.0! Please see the changelog:
https://github.com/nf-core/rnafusion/releases/tag/4.1.0
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Release 4.1.0 · nf-core/rnafusion
Added Added a BAM/CRAM conversion to FASTQ step to run tools that depend on FASTQ files. It still is advised to supply a FASTQ file if possible to reduce runtime of the pipeline. #783 Fixed Fix ...
https://github.com/nf-core/rnafusion/releases/tag/4.1.0
2 months ago
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reposted by
nf-core
Nextflow
2 months ago
We're thrilled to welcome 46 new Nextflow Ambassadors in 2026!🌍 This milestone brings our global community to a remarkable 143 ambassadors across 40 countries (our largest cohort ever).🎉 Here's to building the future of scientific workflows together! 🚀
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Pipeline release! nf-core/ribomsqc vv1.0.0 - nf-core/ribomsqc v1.0.0! Please see the changelog:
https://github.com/nf-core/ribomsqc/releases/tag/v1.0.0
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Release nf-core/ribomsqc v1.0.0 · nf-core/ribomsqc
nf-core/ribomsqc: Changelog The format is based on Keep a Changelog and this project adheres to Semantic Versioning. v1.0.0 - 2026-03-11 Added #27 - Added new quantification markers to XIC line pl...
https://github.com/nf-core/ribomsqc/releases/tag/v1.0.0
2 months ago
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Pipeline release! nf-core/longraredisease v1.0.0 - Longraredisease 1.0.0 ! Please see the changelog:
https://github.com/nf-core/longraredisease/releases/tag/1.0.0
2 months ago
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Pipeline release! nf-core/mag v5.4.1 - mag 5.4.1 - Yellow Frog patch! Please see the changelog:
https://github.com/nf-core/mag/releases/tag/5.4.1
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Release mag 5.4.1 - Yellow Frog patch · nf-core/mag
Changed #993 - Tweak test_full resources to stop failures (by @jfy133) #995 - Update CheckM and BUSCO modules (by @dialvarezs) Fixed #974 - Re-add accidently removed functionality for using meta...
https://github.com/nf-core/mag/releases/tag/5.4.1
2 months ago
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Pipeline release! nf-core/scnanoseq v1.2.2 - nf-core/scnanoseq v1.2.2 - Thallium Tiger! Please see the changelog:
https://github.com/nf-core/scnanoseq/releases/tag/1.2.2
2 months ago
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Pipeline release! nf-core/pixelator v3.0.1 - nf-core/pixelator 3.0.1! Please see the changelog:
https://github.com/nf-core/pixelator/releases/tag/3.0.1
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Release nf-core/pixelator 3.0.1 · nf-core/pixelator
[3.0.1] - 2026-03-09 Enhancements & fixes Fix Issue #191 by @Aratz in #192
https://github.com/nf-core/pixelator/releases/tag/3.0.1
2 months ago
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New blog post! Making nf-core/configs strict syntax compliant
https://nf-co.re/blog/2026/configs-strict-syntax/
2 months ago
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