UW Genome Sciences
@uwgenome.bsky.social
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The Department of Genome Sciences at The University of Washington
Epithelial competition determines gene therapy potential to suppress Fanconi Anemia oral cancer risk
journals.plos.org/ploscompbiol...
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Epithelial competition determines gene therapy potential to suppress Fanconi Anemia oral cancer risk
Author summary We investigated factors influencing the success of oral mucosal gene therapy for Fanconi Anemia (FA), a genetic syndrome marked by DNA repair defects in conjunction with a heightened ri...
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012915
4 days ago
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Registration is now open for the Mutational Scanning Symposium!! 25-27 March 2026 Melbourne, Australia Matt Hurles (Wellcome Sanger) and Maitreya Dunham (University of Washington) Deadline for abstract submissions: 2 November 2025.
www.mss2026.org
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MSS26
Mutational Scanning Symposium 2026, 25-27 March, Melbourne
https://www.mss2026.org
9 days ago
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reposted by
UW Genome Sciences
EichlerLab
19 days ago
𧬠How fast do humans mutate? Our groundbreaking study tracks DNA changes across 4 generations to reveal the pace of human evolution revealing insights into our genetic legacy. Watch now š
youtu.be/6TTCZdZd4Y4
#Genetics
#Evolution
#ScienceVideo
#Nature
@hhmi.org
@uwgenome.bsky.social
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How quickly do humans mutate? Four generations help answer the question
YouTube video by nature video
https://youtu.be/6TTCZdZd4Y4
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Congratulations to Zukai Liu and Bria Metzger on being awarded Parker Travel Awards for best poster at the 2025 department retreat!
13 days ago
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Multiplex and multimodal mapping of variant effects in secreted proteins via MultiSTEP
www.nature.com/articles/s41...
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Multiplex and multimodal mapping of variant effects in secreted proteins via MultiSTEP - Nature Structural & Molecular Biology
Multiplexed assays of variant effect can resolve clinical variants but are incompatible with secreted proteins. Here Popp et al. develop MultiSTEP, a generalizable surface-tethering method to assess v...
https://www.nature.com/articles/s41594-025-01582-w
18 days ago
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Congratulations to Olivia Waltner on being awarded the Bonita and David Brewer Fellowship!
26 days ago
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Lineage-resolved analysis of embryonic gene expression evolution in C. elegans and C. briggsae
www.science.org/doi/10.1126/...
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Lineage-resolved analysis of embryonic gene expression evolution in C. elegans and C. briggsae
The constraints that govern the evolution of gene expression patterns across development remain unclear. Single-cell RNA sequencing can detail these constraints by systematically profiling homologous ...
https://www.science.org/doi/10.1126/science.adu8249
about 1 month ago
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Accelerating Biomolecular Modeling with AtomWorks and RF3
www.biorxiv.org/content/10.1...
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Accelerating Biomolecular Modeling with AtomWorks and RF3
Deep learning methods trained on protein structure databases have revolutionized biomolecular structure prediction, but developing and training new models remains a considerable challenge. To facilita...
https://www.biorxiv.org/content/10.1101/2025.08.14.670328v2.abstract
about 1 month ago
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Congratulations to Jenny Nathans on being awarded an NRSA Fellowship!
about 2 months ago
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Congratulations to Caleb Carr on being awarded an NRSA Fellowship!
2 months ago
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Complex genetic variation in nearly complete human genomes
pubmed.ncbi.nlm.nih.gov/40702183/
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Complex genetic variation in nearly complete human genomes - PubMed
Diverse sets of complete human genomes are required to construct a pangenome reference and to understand the extent of complex structural variation. Here we sequence 65 diverse human genomes and build...
https://pubmed.ncbi.nlm.nih.gov/40702183/
2 months ago
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reposted by
UW Genome Sciences
EichlerLab
3 months ago
Using >130 human & 12 primate haplotypes, we reconstruct the chromosome 22q11.2 evolution to identify haplotype structures linked to deletions or inversions, explaining the lower prevalence of 22q11.2 deletion syndrome in individuals of African descent.
@hhmi.org
@uwgenome.bsky.social
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Congratulations to Maggie Russell on receiving the UW Graduate School's Distinguished Dissertation Award!
3 months ago
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Congratulations to Leah Anderson on winning the best talk award at the Pacific Northwest Yeast Club meeting!
www.pnwyc.net
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PNWYC
PNWYC 2025 Meeting A day for yeast labs in the Pacific Northwest to get together and share research, outreach, teaching, and more! June 20th, 2025, in Vancouver, Canada Michael Smith Laboratories, Uni...
https://www.pnwyc.net/
3 months ago
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Congratulations to Alison Feder on receiving the SMBE 2025 Early-Career Excellence Award!
members.smbe.org/news/Details...
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SMBE 2025 Faculty Award Winners
SMBE is delighted to announce our 2025 Faculty Award Winners! Early-Career Excellence Award winner:Ā Alison Feder Alison Feder is an Assistant Professor of Genome Sciences at the University of Washingt...
https://members.smbe.org/news/Details/smbe-2025-faculty-award-winners-273805
3 months ago
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Congratulations to Leah Anderson and Elliott Swanson on receiving the Sonia Ting Travel Award!
3 months ago
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Gene clusters linked to insulin resistance identified in a genome-wide study of the Taiwan Biobank population
www.nature.com/articles/s41...
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Gene clusters linked to insulin resistance identified in a genome-wide study of the Taiwan Biobank population - Nature Communications
Understanding genetic drivers of insulin resistance is crucial for addressing metabolic disorders. Here, the authors show associations involving GCKR, MLXIPL, APOA5, and APOC1, highlighting adipose ti...
https://www.nature.com/articles/s41467-025-58506-x
4 months ago
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Harmful algal blooms are preceded by a predictable and quantifiable shift in the oceanic microbiome
www.nature.com/articles/s41...
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Harmful algal blooms are preceded by a predictable and quantifiable shift in the oceanic microbiome - Nature Communications
Harmful algal blooms (HABs) pose negative worldwide impacts that could be minimized through the development of a forecasting tool. Quantitative analysis of peptides produced by a coastal microbiome pr...
https://www.nature.com/articles/s41467-025-59250-y
4 months ago
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Population size interacts with reproductive longevity to shape the germline mutation rate
www.pnas.org/doi/10.1073/...
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2423311122
4 months ago
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Congratulations to Lara Muffley on being awarded the UW Distinguished Staff Award for Collaboration!
www.washington.edu/facultystaff...
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UW Announces 2025 Awards of Excellence Recipients
The UW is delighted to announce the recipients of the 55th annual University of Washington Awards of Excellence! The awards honor outstanding alumni, faculty, staff, students and retirees who...
https://www.washington.edu/facultystaff/2025/05/01/uw-announces-2025-awards-of-excellence-recipients/
5 months ago
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GS grad Lizzie Plender is featured on the ASHG Trainee Excellence Spotlight Podcast!
podcasts.apple.com/us/podcast/t...
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Trainee Excellence Spotlight: Elizabeth Plender, BS/BA
Podcast Episode Ā· Trainee Excellence Podcast Ā· 12/19/2024 Ā· 27m
https://podcasts.apple.com/us/podcast/trainee-excellence-spotlight-elizabeth-plender-bs-ba/id1606246832?i=1000681006519
5 months ago
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reposted by
UW Genome Sciences
UW Medicine Newsroom
5 months ago
2025 Public Welfare Medalist
@nasonline.org
Mary-Claire King,
@uwdeptmedicine.bsky.social
@uwgenome.bsky.social
@uwmedicine.bsky.social
cancer geneticist, gave her acceptance speech April 27 at an awards ceremony held during the 162nd annual meeting of the National Academy of Sciences
#NASAward
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Congratulations to Hannah Jordt (faculty), Deanna Plubell (postdoc), Sandra Pennington (staff), and Leah Anderson (student) on receiving the UW Genome Sciences Department Outstanding Service Award!
5 months ago
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4 generations help science explore genome mutation rate
newsroom.uw.edu/news-release...
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4 generations help science explore genome mutation rate - UW Medicine | Newsroom
https://newsroom.uw.edu/news-releases/4-generations-help-science-explore-genome-mutation-rate
5 months ago
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Peptide biomarkers predict coral survival from heat stress
newsroom.uw.edu/news-release...
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Peptide biomarkers predict coral survival from heat stress - UW Medicine | Newsroom
https://newsroom.uw.edu/news-releases/peptide-biomarkers-predict-coral-survival-from-heat-stress
5 months ago
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A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data
www.biorxiv.org/content/10.1...
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A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data
A core computational challenge in the analysis of mass spectrometry data is the de novo sequencing problem, in which the generating amino acid sequence is inferred directly from an observed fragmentat...
https://www.biorxiv.org/content/10.1101/2024.06.03.597251v1
5 months ago
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Complete sequencing of ape genomes
www.nature.com/articles/s41...
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Complete sequencing of ape genomes - Nature
Complete sequences of chromosomes telomere-to-telomere from chimpanzee, bonobo, gorilla, Bornean orangutan, Sumatran orangutan and siamang provide a comprehensive and valuable resource for future evol...
https://www.nature.com/articles/s41586-025-08816-3
6 months ago
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Congratulations to Chris McGann and Bo Wen on receiving graduate student awards at the 2025 ASMS Conference!
6 months ago
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Congratulations to Abby McGee and Val Browning on being awarded NSF Fellowships, and to Matt Chaw, Marazzano Colon, Bria Metzger, Rachel Powell, and Catherine Sniezek on receiving honorable mention!
6 months ago
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Predicting cell cycle stage from 3D single-cell nuclear-stained images
www.life-science-alliance.org/content/8/6/...
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Predicting cell cycle stage from 3D single-cell nuclear-stained images
The cell cycle governs the proliferation of all eukaryotic cells. Profiling cell cycle dynamics is therefore central to basic and biomedical research. However, current approaches to cell cycle profili...
https://www.life-science-alliance.org/content/8/6/e202403067
6 months ago
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Congratulations to Syd Sattler on receiving the first place travel award for best graduate student talk at the Northwest Development Biology conference!
6 months ago
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Celeste Berg has been named an AAAS Fellow.
www.washington.edu/news/2025/03...
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Five UW researchers named AAAS Fellows
Five University of Washington researchers have been named AAAS Fellows, according to a March 27 announcement by the American Association for the Advancement of Science. They are among 471 newly...
https://www.washington.edu/news/2025/03/27/five-uw-researchers-named-aaas-fellows/
6 months ago
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Congratulations to Connor Finkbeiner on being awarded an NRSA Fellowship!
6 months ago
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Congratulations to Xavi Guitart / General Molecular Electronics on winning second place at the UW Hollomon Health Innovation Challenge!
www.geekwire.com/2025/tech-to...
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Newborn jaundice detection tool wins grand prize at University of Wash. health innovation challenge
University of Washington students won the grand prize at the UW's Hollomon Health Innovation Challenge for their jaundice-detecting technology.
https://www.geekwire.com/2025/tech-to-aid-jaundiced-babies-wins-health-innovation-prize-at-university-of-washington-competition/
7 months ago
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Alison Feder has received the Early Career Achievement in STEM award from Seattle AWIS.
seattleawis.org/awards/
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Awards & Banquet ā Seattle AWISLinkedIn iconTwitter icon
https://seattleawis.org/awards/
7 months ago
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Mary-Claire King to receive NAS Public Welfare Medal
newsroom.uw.edu/news-release...
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Mary-Claire King to receive Public Welfare Medal - UW Medicine | Newsroom
https://newsroom.uw.edu/news-releases/mary-claire-king-to-receive-public-welfare-medal
7 months ago
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Proteomic Insights into Psychrophile Growth in Perchlorate-Amended Subzero Conditions: Implications for Martian Life Detection
www.liebertpub.com/doi/full/10....
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Proteomic Insights into Psychrophile Growth in Perchlorate-Amended Subzero Conditions: Implications for Martian Life Detection | Astrobiology
Since the discovery of perchlorates in martian soils, astrobiologists have been curious if and how life could survive in these low-water, high-salt environments. Perchlorates induce chaotropic and oxidative stress but can also confer increased cold tolerance in some extremophiles. Though bacterial survival has been demonstrated at subzero temperatures and in perchlorate solution, proteomic analysis of cells growing in an environment like martian regolith brinesāperchlorate with subzero temperaturesāhas yet to be demonstrated. By defining biosignatures of survival and growth in perchlorate-amended media at subzero conditions, we move closer to understanding the mechanisms that underlie the feasibility of life on Mars. Colwellia psychrerythraea str. 34H (Cp34H), a marine psychrophile, was exposed to perchlorate ions in the form of a diluted Phoenix Mars Lander Wet Chemistry Laboratory solution at ā1°C and ā5°C. At both temperatures in perchlorate-amended media, Cp34H grew at reduced rates. Mass spectrometry-based proteomics analyses revealed that proteins responsible for mitigating effects of oxidative and chaotropic stress increased, while cellular transport proteins decreased. Cumulative protein signatures suggested modifications to cellācell or cellāsurface adhesion properties. These physical and biochemical traits could serve as putative identifiable biosignatures for life detection in martian environments.
https://www.liebertpub.com/doi/full/10.1089/ast.2024.0065
7 months ago
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Proteomic Plasticity in the Coral Montipora capitata Gamete Bundles after Parent Thermal Bleaching
pubs.acs.org/doi/full/10....
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Proteomic Plasticity in the Coral Montipora capitata Gamete Bundles after Parent Thermal Bleaching
Coral reefs are vital to marine biodiversity and human livelihoods, but they face significant threats from climate change. Increased ocean temperatures drive massive ābleachingā events, during which c...
https://pubs.acs.org/doi/full/10.1021/acs.jproteome.4c00946
7 months ago
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Structural polymorphism and diversity of human segmental duplications
www.nature.com/articles/s41...
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Structural polymorphism and diversity of human segmental duplications - Nature Genetics
Analysis of 170 human genomes assembled using long-read sequencing provides a map of structural variation within regions of segmental duplication and identifies novel candidate protein-coding genes su...
https://www.nature.com/articles/s41588-024-02051-8
7 months ago
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Mapping Genetic Variants and Their Ties to Disease
huddle.uwmedicine.org/mapping-gene...
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Mapping Genetic Variants and Their Ties to Disease - UW Medicine Huddle
Local Team Leads Global Research into Genomic Variants | UW Medicine Huddle
https://huddle.uwmedicine.org/mapping-genetic-variants-and-their-ties-to-disease/
8 months ago
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Multiplex generation and single-cell analysis of structural variants in mammalian genomes
www.science.org/doi/10.1126/...
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Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Studying the functional consequences of structural variants (SVs) in mammalian genomes is challenging because (i) SVs arise much less commonly than single-nucleotide variants or small indels and (ii) ...
https://www.science.org/doi/10.1126/science.ado5978
8 months ago
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Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition
www.nature.com/articles/s41...
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Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition - Nature Genetics
Simultaneous profiling of the genome, methylome, epigenome and transcriptome using single-molecule chromatin fiber sequencing and multiplexed arrays isoform sequencing identifies the genetic and molec...
https://www.nature.com/articles/s41588-024-02067-0
8 months ago
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DNA Today Podcast out last week! Revolutionizing Variant Curation with Multiplex Assays of Variant Effect- Interview with Lea Starita and Doug Fowler
dnapodcast.com/episodes/202...
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#325 Revolutionizing Variant Curation with MAVEs ā DNA Today
Drs. Fowler and Starita explain how multiplexed assays of variant effect are helping to curate variants. Fast.
https://dnapodcast.com/episodes/2025/1/24/325-revolutionizing-variant-curation-with-maves
8 months ago
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Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER
www.nature.com/articles/s41...
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Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER - Nature Methods
pSABER combines the power of signal amplification by exchange reaction (SABER) with the deposition of fluorescent or colorimetric substrates by horseradish peroxidase to enable enhanced signals for in...
https://www.nature.com/articles/s41592-024-02512-2
8 months ago
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A maternal germline mutator phenotype in a family affected by heritable colorectal cancer
academic.oup.com/genetics/art...
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A maternal germline mutator phenotype in a family affected by heritable colorectal cancer
Abstract. Variation in DNA repair genes can increase cancer risk by elevating the rate of oncogenic mutation. Defects in one such gene, MUTYH, are known to
https://academic.oup.com/genetics/article/228/4/iyae166/7822255?login=true
8 months ago
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An In-Depth Coho Salmon (Oncorhynchus kisutch) Ovarian Follicle Proteome Reveals Coordinated Changes Across Diverse Cellular Processes during the Transition From Primary to Secondary Growth
analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/...
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An InāDepth Coho Salmon (Oncorhynchus kisutch) Ovarian Follicle Proteome Reveals Coordinated Changes Across Diverse Cellular Processes during the Transition From Primary to Secondary Growth
Teleost fishes are a highly diverse, ecologically essential group of aquatic vertebrates that include coho salmon (Oncorhynchus kisutch). Coho are semelparous and all ovarian follicles develop synchr...
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/pmic.202400311
8 months ago
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Hello Bluesky from UW Genome Sciences! We're happy to join other members of our department over here
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https://bsky.app/starter-pack-short/L8RAbiJ
8 months ago
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