Arnaud Krebs
@arnaudkr.bsky.social
📤 1628
📥 452
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Group leader at EMBL Heideberg
https://www.embl.org/groups/krebs/
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Arnaud Krebs
Jana Helsen
3 days ago
I am starting my lab at the University of Geneva next January! Incredibly excited to soon be joining the MOCEL department as an Asst. Professor. The lab will use evolutionary cell biology to study chromosomes, centromeres & speciation 🧬🔬🌱 Intrigued, want to join or collaborate? 🔗
helsenlab.org
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Helsen lab | chromosome and centromere evolution
The Helsen lab at the University of Geneva explores how centromeres and chromosomes evolve, diversify, and function across eukaryotes. Discover our latest publications, research team, and open positio...
https://helsenlab.org
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Alexis Verger 🧬🧫🧪
2 days ago
In memory of Pierre Chambon (1931–2026): a visionary pioneer of modern molecular biology by Hinrich Gronemeyer in
@embojournal.org
link.springer.com/article/10.1...
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In memory of Pierre Chambon (1931–2026): a visionary pioneer of modern molecular biology - The EMBO Journal
The EMBO Journal -
https://link.springer.com/article/10.1038/s44318-026-00840-x
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Alejandro Montenegro
3 days ago
Interesting. Full deletion of all introns in yeast was actually my project in the Staley lab, *20 years ago*. I actually found a bunch of phenotypes. We did this in collaboration with the Guthrie lab.
www.cell.com/cell/abstrac...
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A spliceosome-independent eukaryote generated by complete intron removal
Elimination of all spliceosomal introns reveals a spliceosome-independent eukaryote.
https://www.cell.com/cell/abstract/S0092-8674(26)00624-0
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Alex Radzisheuskaya
10 days ago
1/ Very excited to share the first publication from my lab! In this work, we developed an efficient strategy to precisely mutate mammalian histone genes in their native genomic context using CRISPR prime editing:
www.nature.com/articles/s41...
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Identifying critical lysines in mammalian histone H3 with high-throughput CRISPR prime editing - Nature Genetics
This study uses a precise and efficient clustered regularly interspaced short palindromic repeats (CRISPR) prime editing system to substitute lysine residues in histone H3, individually or in combinat...
https://www.nature.com/articles/s41588-026-02675-y
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Mike Dorrity
17 days ago
First preprint stemming from a fantastic collaboration with
@hanhtkvu.bsky.social
Shared PhD student and BIF fellow
@gvaidya.bsky.social
led this tour de force - check it out ! How does temperature affect whole-organism cellular trajectories?
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Hanh Vu
17 days ago
Super excited that the first preprint from the lab is out! Led by an amazing student, Gaurav
@gvaidya.bsky.social
, jointly supervised with
@mwdorr.bsky.social
.
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Job Dekker
18 days ago
Frank Grosveld has been a giant in the field of long-range gene regulation. Inspirational to me and I am sure for many others. Rest in peace.
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Mike Dorrity
29 days ago
First pre-print from the lab, a collaborative effort led by Jess Bourn
@bournsupremacy.bsky.social
, a fantastic PhD in my group. We resolve a key problem in development + evolution: how do we quantify heterochrony and link temporal variation to phenotype?
www.biorxiv.org/content/10.6...
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Quantitative mapping of heterochrony to species-specific phenotypes
The genetic program of animal development is conserved, but its rate of execution varies across species. Heterochrony, shifts in the relative timing of developmental events, generates phenotypic varia...
https://www.biorxiv.org/content/10.64898/2026.06.15.732302v1
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Congresswoman Maxine Dexter, M.D.
30 days ago
Pressure works. Three days ago, I joined lawmakers pressuring the White House to stop its plan to dismantle a $368 million ocean monitoring system that is CRITICAL to understanding climate change and marine ecosystems, including right here off the coast of Oregon. Today, Trump backed down.
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Trump Administration Backs Off Plan to End Ocean Monitoring
https://www.nytimes.com/2026/06/18/climate/trump-ocean-observatories-initiative.html?smid=nytcore-ios-share
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Svetlana Dodonova
30 days ago
Excited to share our new preprint! 🧬❄️ by brilliant
@mdreimann.bsky.social
and great collaborators! Using cryo-ET&EM, we reveal archaeal chromatin in a near-native state: variable-beads-on-a-string fibers shaped by growth phase and histone composition
#ArchaeaSky
www.biorxiv.org/content/10.6...
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Kevin M. Kruse
about 1 month ago
"So ... so I said ... why not sign your treaty here, at Versailles?"
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Vijay Ramani
about 1 month ago
JIT 4 summer, the latest preprint from our lab, brilliantly led by
@kaitezhang.bsky.social
w/ support from Collepardo lab (
@juliamaristany.bsky.social
/
@janhuemar.bsky.social
).
www.biorxiv.org/content/10.6...
describes a new single-molecule epigenomic method, & discoveries it enables ... (1/n)
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Single-molecule nucleosome spacing coordinates chromatin fiber interactions
Nucleosome spacing influences higher-order chromatin fiber organization in vitro but how this relates to cellular chromosome structure remains contentious. To address this, we developed Ligation Analy...
https://www.biorxiv.org/content/10.64898/2026.06.02.729033v1
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This will be cool! Featuring Valentina presenting her PhD work in my lab.
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about 1 month ago
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Maxim Greenberg
about 1 month ago
🚨Preprint Drop🚨 We are very pleased to release our study on DNA methylation dynamics at enhancers during ESC differentiation! This work was led by Marlet Morales-Franco and Priscillia Lhoumaud 🧵(1/13)
www.biorxiv.org/content/10.6...
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Dual profiling of DNA modifications with enhancer features during the exit of naive pluripotency
Cis-regulatory elements, such as enhancers, play an essential role in coordinating gene expression programs during cellular transitions. As such, substantial efforts have been made to characterize enh...
https://www.biorxiv.org/content/10.64898/2026.06.12.731885v1
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Higor Rosa
2 months ago
Thrilled to share the updated video of my paper in Nature with Maciej (under supervision of
@simonemattei.bsky.social
&
@jomaalab.bsky.social
) Proud to use Cryo-ET to uncover how hibernation factors are key to translation restart! To model PTMs in situ and render animations fulfilled my PhD dream!🥹🎉
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Karolin Luger
2 months ago
Out today - structure of the human HIRA histone chaperone complex bound to nucleosomes. Ever wondered how nucleosomes are assembled in the wake of transcription? It takes a 'hulk of a protein complex'. Work by the amazing Wei Tian
weetian558.bsky.social
.
www.biorxiv.org/content/10.6...
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Karolin Luger
2 months ago
Sad news - he certainly was a towering figure with many influential discoveries - see below. Why he was never awarded the 'big' prize is truly baffling, but his many contributions to science will be remembered much longer than any prize. Thank you
@alexis-verger.cpesr.fr
for putting this together.
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An historical figure of the transcription field has gone. Founder of
@igbmc.bsky.social
where I started my career. A great enabler as well.
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2 months ago
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Denis Duboule
2 months ago
Pierre Chambon was a great scientist. And a good man too. He alone opposed to leading British embryologists during the evaluation of a case of scientific misconduct more than 40 years ago, to defend young scientists against an establishment to which he belonged. An unforgettable lesson. RIP Pierre 💐
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Schubeler Lab
2 months ago
Excited to share our new study on CpG islands (CGIs) regulation by transcription factors (TFs)! CGIs drive most transcription initiation with unclear regulation. We find that chromatin-opening TFs are key players—following a surprisingly simple rule. 🧵
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.04.722487v1
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Grand Lab
2 months ago
Excited to share our first story led by
@martinacapriati.bsky.social
! How do cells control the expression of viability genes? We find that single transcription factors can drive both chromatin opening and gene activation from densely co-bound CpG island promoters, including at essential genes
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Vijay Ramani
2 months ago
Delighted to share our lab's latest (w/ inimitable
@genophoria.bsky.social
) in final form at
@nature.com
. Enormous lift by Sean Wang,
@palindromephd.bsky.social
&
@martyyang.bsky.social
to address extensive & constructive reviewer comments & see this through. (1/n)
www.nature.com/articles/s41...
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Pervasive and programmed nucleosome distortion on single chromatin fibres - Nature
An analytical pipeline called Iteratively Defined Lengths of Inaccessibility (IDLI) maps the genome-wide occupancy of a range of nucleosome types and shows that most nucleosomes exhibit programmed ‘di...
https://www.nature.com/articles/s41586-026-10418-6
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Stefan Terjung
3 months ago
We are looking for an experienced light microscopy specialist, motivated to support our users in the Advanced Light Microscopy Facility at EMBL Heidelberg.
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
-closing date 11 May 2026
@eurobioimaging.bsky.social
@globalbioimaging.bsky.social
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https://embl.wd103.myworkdayjobs.com/en-US/EMBL/job/Scientific-Officer---Advanced-Light-Microscopy_JR3634-
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Denis Duboule
3 months ago
Chers Collègues et Amis de Strasbourg, je serai à la Bibliothèque Nationale et Universitaire (BNU) le 21 avril à 18h30 pour partager mes souvenirs d’embryon. Apportez les vôtres! Consultation gratuite.
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Agnese Loda
4 months ago
This is a FANTASTIC method to capture multilayer chromatin and gene regulation at allelic resolution(!!💥!!) on the same DNA molecule 🤩🥳🤩🥳 Well done
@mpalamin.bsky.social
and
@arnaudkr.bsky.social
👏👏👏👏👏 - very beautiful work as always 💫💫💫!!
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Want to know how histone marks regulate your favorite gene? Go single molecule with ChromSMF: integrated measure of chromatin accessibility and histone marks + DNA methylation, TF footprints and genotype for free! Very proud of
@mpalamin.bsky.social
!
@embl.org
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4 months ago
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Julius Brennecke
4 months ago
There has never been a better time to study functional and mechanistic biology at the organismal (!) level than now in the age of AlphaFold and CRISPR.
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Aissam Ikmi
4 months ago
Our study on shape diversity in cnidarians is now published. The final version includes extensive new data that substantially extend the original bioRxiv preprint. Congrats to everyone who contributed to this work!
www.cell.com/cell/fulltex...
@embl.org
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Quantitative biology community: QBMM is back! Line up is just stellar and many abstract selected talks. Apply! 👇
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4 months ago
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Arnaud Krebs
Bas van Steensel lab (NKI)
4 months ago
New preprint from our lab... We applied our hopping technology to relocate CTCF binding sites to thousands of alternative positions in the Sox2 locus:
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.03.16.711995v1
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How do chromatin mark control TF activity and gene regulation? I will unfortunately not be at the
@cshlmeetings.bsky.social
Systems Biology this year, but very excited that
@mpalamin.bsky.social
will present her work
@embl.org
. Spoiler it involves a novel multiplexed single molecule genomics assays!
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4 months ago
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Arnaud Krebs
Maxim Greenberg
4 months ago
Very excited to announce the FIRST symposium on epigenome editing! These tools are becoming widely used in mol bio, ag & therapy. It's time to bring leaders together to discuss this rapidly growing and exciting field. And why not in Paris! Please register & share! (1/2)
ctrlepiedit.sciencesconf.org
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Max Perutz Labs Vienna
4 months ago
One frame. Many voices. ✨ This International Women’s Day, our Women in Science series features group leader Christa Bücker 🙌 Today,
@chribue.bsky.social
shares an important perspective on finding role models and becoming one for the next generation 👩🔬
@univie.ac.at
@meduniwien.ac.at
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Joaquina Delas
5 months ago
📣 We are looking for new colleagues 🔬🧬🧪 The
@lmcb-ucl.bsky.social
at University College London
@ucllifesciences.bsky.social
are looking for outstanding candidates to sponsor for career development fellowships. Fellows would then be assessed for tenured positions at the end of the fellowship term.
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Must read. Fascinating topic.
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5 months ago
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Arnaud Krebs
Enhanced Genomics
5 months ago
🧬
@danielibrahim.bsky.social
, moderated by
@stefanschoenfelder.bsky.social
, on enhancer-promoter specificity & how promoter-proximal regions act as molecular filters. Register:
us02web.zoom.us/webinar/regi...
March 5, 4PM UK.
#Genomics
#GeneRegulation
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Denis Duboule
5 months ago
Vendredi prochain 6 mars à 10h, début de mon cours 2026
@college-de-france.fr
. Les relations conflictuelles entre les variations de l’ADN et l’évolution des structures🤓 L’ADN; cause proximale ou cause ultime? 🤔 Entrée libre, sortie libre! Amis Parisiens, 🙏RT 🤘
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Arnaud Krebs
Anthony Mathelier
5 months ago
📢 Hiring! Our group
@ncmbm.bsky.social
seeks a Research Scientist contributing to: • Reproducible pipelines for large-scale genomics • cisreg signature analysis in breast cancer • Continued development of JASPAR • Cross-disciplinary collaboration Apply now 👉
www.jobbnorge.no/en/available...
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Hiroshi Ochiai
5 months ago
1/3 New bioRxiv preprint from the lab: “Minute-scale coupling of chromatin marks and transcriptional bursts”. Led by Xiohui Gao & Chaebeen Ko. bioRxiv :
www.biorxiv.org/cgi/content/...
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Alejo Rodriguez-Fraticelli
6 months ago
🚨WE'RE RECRUITING AT
@irbbarcelona.org
!!!! --- ADVANCED GENOMICS FACILITY MANAGER --- An amazing opportunity to help us drive the fight against cancer and other aging-related diseases using Single-cell, Bulk and Spatial genomics!!!! APPLY NOW!!!!
recruitment.irbbarcelona.org/jobs/7124180...
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Head, Advanced Genomics Technologies Core Facility (Ref. CF/26/01) - IRB Barcelona
IRB Barcelona invites applications for the position of Head, Advanced Genomics Technologies Core Facility. The successful candidate will report to the Director, Technology Strateg...
https://recruitment.irbbarcelona.org/jobs/7124180-head-advanced-genomics-technologies-core-facility-ref-cf-26-01
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Come and join us at EMBL. Best way to get your scientific career started!
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6 months ago
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Vivek Mutalik
6 months ago
🤯🤯
#microsky
#Phagesky
#synbiosky
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Very important work to reconcile canonical transcription initiation structures with the promoter diversity occurring in vivo. Some explanation on how the large majority of our promoters (TATA-less) ma initiate transcription through contacts downstream of the TSS.
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6 months ago
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Epigenetics that matters! Very cool work on hard to hard-to-access cell types . Finally some solid epigenetics examples that should be used in textbooks! Congrats to Mathieu and team
@embl.org
Rome!
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6 months ago
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This is nuts. Dead ringers fused. Cronenberg would have loved that.
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6 months ago
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Arnaud Krebs
Alex Stark
7 months ago
Join
@stirlingchurchman.bsky.social
,
@moffittlab.bsky.social
,
@saramostafavi.bsky.social
, me and all speakers for the 2026 CSHL meeting Systems Biology: Global Regulation of Gene Expression, March 11-14. Abstract deadline January 9! More infos and registration at
meetings.cshl.edu/meetings.asp...
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Kerstin Göpfrich
7 months ago
Still time to apply until January, 19th!
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The best chromatin kickstart pack you will find this year - please consider it if you want to get in the field or consolidate your skills. Hands on training and top notch speakers!
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7 months ago
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Arnaud Krebs
Jacob Schreiber
7 months ago
After a huge amount of work w/
@alex-stark.bsky.social
's group, a new version of our Ledidi preprint is now out! In an era of AI-designed proteins, the next leap will be controlling when, where, and how much of these proteins are expressed in living cells.
www.biorxiv.org/content/10.1...
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Programmatic design and editing of cis-regulatory elements
The development of modern genome editing and DNA synthesis has enabled researchers to edit DNA sequences with high precision but has left unsolved the problem of designing these edits. We introduce Le...
https://www.biorxiv.org/content/10.1101/2025.04.22.650035v2
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Rob Klose
7 months ago
An early Christmas present for those interested in chromatin and transcription! Fantastic work from
@au-ho-yu.bsky.social
and
@aleksszczurek.bsky.social
. Thanks to Inge and Michiel for their help. Please repost!
www.biorxiv.org/content/10.6...
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SET1/MLL complexes control transcription independently of H3K4me3
Histone H3 lysine 4 trimethylation (H3K4me3) at gene promoters is thought to play a central role in gene transcription. H3K4 methylation is deposited by the SET1 (A/B) and MLL (1-4) multi-protein comp...
https://www.biorxiv.org/content/10.64898/2025.12.08.692985v1
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