Arnaud Krebs
@arnaudkr.bsky.social
📤 1610
📥 448
📝 103
Group leader at EMBL Heideberg
https://www.embl.org/groups/krebs/
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Arnaud Krebs
Higor Rosa
19 days ago
Thrilled to share the updated video of my paper in Nature with Maciej (under supervision of
@simonemattei.bsky.social
&
@jomaalab.bsky.social
) Proud to use Cryo-ET to uncover how hibernation factors are key to translation restart! To model PTMs in situ and render animations fulfilled my PhD dream!🥹🎉
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Karolin Luger
15 days ago
Out today - structure of the human HIRA histone chaperone complex bound to nucleosomes. Ever wondered how nucleosomes are assembled in the wake of transcription? It takes a 'hulk of a protein complex'. Work by the amazing Wei Tian
weetian558.bsky.social
.
www.biorxiv.org/content/10.6...
🧵
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Karolin Luger
25 days ago
Sad news - he certainly was a towering figure with many influential discoveries - see below. Why he was never awarded the 'big' prize is truly baffling, but his many contributions to science will be remembered much longer than any prize. Thank you
@alexis-verger.cpesr.fr
for putting this together.
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An historical figure of the transcription field has gone. Founder of
@igbmc.bsky.social
where I started my career. A great enabler as well.
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25 days ago
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Denis Duboule
25 days ago
Pierre Chambon was a great scientist. And a good man too. He alone opposed to leading British embryologists during the evaluation of a case of scientific misconduct more than 40 years ago, to defend young scientists against an establishment to which he belonged. An unforgettable lesson. RIP Pierre 💐
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Schubeler Lab
26 days ago
Excited to share our new study on CpG islands (CGIs) regulation by transcription factors (TFs)! CGIs drive most transcription initiation with unclear regulation. We find that chromatin-opening TFs are key players—following a surprisingly simple rule. 🧵
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.05.04.722487v1
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Grand Lab
26 days ago
Excited to share our first story led by
@martinacapriati.bsky.social
! How do cells control the expression of viability genes? We find that single transcription factors can drive both chromatin opening and gene activation from densely co-bound CpG island promoters, including at essential genes
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Vijay Ramani
27 days ago
Delighted to share our lab's latest (w/ inimitable
@genophoria.bsky.social
) in final form at
@nature.com
. Enormous lift by Sean Wang,
@palindromephd.bsky.social
&
@martyyang.bsky.social
to address extensive & constructive reviewer comments & see this through. (1/n)
www.nature.com/articles/s41...
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Pervasive and programmed nucleosome distortion on single chromatin fibres - Nature
An analytical pipeline called Iteratively Defined Lengths of Inaccessibility (IDLI) maps the genome-wide occupancy of a range of nucleosome types and shows that most nucleosomes exhibit programmed ‘di...
https://www.nature.com/articles/s41586-026-10418-6
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Stefan Terjung
about 2 months ago
We are looking for an experienced light microscopy specialist, motivated to support our users in the Advanced Light Microscopy Facility at EMBL Heidelberg.
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
-closing date 11 May 2026
@eurobioimaging.bsky.social
@globalbioimaging.bsky.social
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https://embl.wd103.myworkdayjobs.com/en-US/EMBL/job/Scientific-Officer---Advanced-Light-Microscopy_JR3634-
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Denis Duboule
about 2 months ago
Chers Collègues et Amis de Strasbourg, je serai à la Bibliothèque Nationale et Universitaire (BNU) le 21 avril à 18h30 pour partager mes souvenirs d’embryon. Apportez les vôtres! Consultation gratuite.
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Agnese Loda
2 months ago
This is a FANTASTIC method to capture multilayer chromatin and gene regulation at allelic resolution(!!💥!!) on the same DNA molecule 🤩🥳🤩🥳 Well done
@mpalamin.bsky.social
and
@arnaudkr.bsky.social
👏👏👏👏👏 - very beautiful work as always 💫💫💫!!
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Want to know how histone marks regulate your favorite gene? Go single molecule with ChromSMF: integrated measure of chromatin accessibility and histone marks + DNA methylation, TF footprints and genotype for free! Very proud of
@mpalamin.bsky.social
!
@embl.org
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2 months ago
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Julius Brennecke
2 months ago
There has never been a better time to study functional and mechanistic biology at the organismal (!) level than now in the age of AlphaFold and CRISPR.
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Aissam Ikmi
2 months ago
Our study on shape diversity in cnidarians is now published. The final version includes extensive new data that substantially extend the original bioRxiv preprint. Congrats to everyone who contributed to this work!
www.cell.com/cell/fulltex...
@embl.org
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Quantitative biology community: QBMM is back! Line up is just stellar and many abstract selected talks. Apply! 👇
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2 months ago
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Arnaud Krebs
Bas van Steensel lab (NKI)
3 months ago
New preprint from our lab... We applied our hopping technology to relocate CTCF binding sites to thousands of alternative positions in the Sox2 locus:
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.03.16.711995v1
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How do chromatin mark control TF activity and gene regulation? I will unfortunately not be at the
@cshlmeetings.bsky.social
Systems Biology this year, but very excited that
@mpalamin.bsky.social
will present her work
@embl.org
. Spoiler it involves a novel multiplexed single molecule genomics assays!
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3 months ago
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Maxim Greenberg
3 months ago
Very excited to announce the FIRST symposium on epigenome editing! These tools are becoming widely used in mol bio, ag & therapy. It's time to bring leaders together to discuss this rapidly growing and exciting field. And why not in Paris! Please register & share! (1/2)
ctrlepiedit.sciencesconf.org
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Max Perutz Labs Vienna
3 months ago
One frame. Many voices. ✨ This International Women’s Day, our Women in Science series features group leader Christa Bücker 🙌 Today,
@chribue.bsky.social
shares an important perspective on finding role models and becoming one for the next generation 👩🔬
@univie.ac.at
@meduniwien.ac.at
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Joaquina Delas
3 months ago
📣 We are looking for new colleagues 🔬🧬🧪 The
@lmcb-ucl.bsky.social
at University College London
@ucllifesciences.bsky.social
are looking for outstanding candidates to sponsor for career development fellowships. Fellows would then be assessed for tenured positions at the end of the fellowship term.
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Must read. Fascinating topic.
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3 months ago
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Enhanced Genomics
3 months ago
🧬
@danielibrahim.bsky.social
, moderated by
@stefanschoenfelder.bsky.social
, on enhancer-promoter specificity & how promoter-proximal regions act as molecular filters. Register:
us02web.zoom.us/webinar/regi...
March 5, 4PM UK.
#Genomics
#GeneRegulation
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Denis Duboule
3 months ago
Vendredi prochain 6 mars à 10h, début de mon cours 2026
@college-de-france.fr
. Les relations conflictuelles entre les variations de l’ADN et l’évolution des structures🤓 L’ADN; cause proximale ou cause ultime? 🤔 Entrée libre, sortie libre! Amis Parisiens, 🙏RT 🤘
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Arnaud Krebs
Anthony Mathelier
4 months ago
📢 Hiring! Our group
@ncmbm.bsky.social
seeks a Research Scientist contributing to: • Reproducible pipelines for large-scale genomics • cisreg signature analysis in breast cancer • Continued development of JASPAR • Cross-disciplinary collaboration Apply now 👉
www.jobbnorge.no/en/available...
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Hiroshi Ochiai
4 months ago
1/3 New bioRxiv preprint from the lab: “Minute-scale coupling of chromatin marks and transcriptional bursts”. Led by Xiohui Gao & Chaebeen Ko. bioRxiv :
www.biorxiv.org/cgi/content/...
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Alejo Rodriguez-Fraticelli
4 months ago
🚨WE'RE RECRUITING AT
@irbbarcelona.org
!!!! --- ADVANCED GENOMICS FACILITY MANAGER --- An amazing opportunity to help us drive the fight against cancer and other aging-related diseases using Single-cell, Bulk and Spatial genomics!!!! APPLY NOW!!!!
recruitment.irbbarcelona.org/jobs/7124180...
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Head, Advanced Genomics Technologies Core Facility (Ref. CF/26/01) - IRB Barcelona
IRB Barcelona invites applications for the position of Head, Advanced Genomics Technologies Core Facility. The successful candidate will report to the Director, Technology Strateg...
https://recruitment.irbbarcelona.org/jobs/7124180-head-advanced-genomics-technologies-core-facility-ref-cf-26-01
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Come and join us at EMBL. Best way to get your scientific career started!
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4 months ago
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Vivek Mutalik
4 months ago
🤯🤯
#microsky
#Phagesky
#synbiosky
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Very important work to reconcile canonical transcription initiation structures with the promoter diversity occurring in vivo. Some explanation on how the large majority of our promoters (TATA-less) ma initiate transcription through contacts downstream of the TSS.
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5 months ago
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Epigenetics that matters! Very cool work on hard to hard-to-access cell types . Finally some solid epigenetics examples that should be used in textbooks! Congrats to Mathieu and team
@embl.org
Rome!
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5 months ago
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This is nuts. Dead ringers fused. Cronenberg would have loved that.
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5 months ago
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Alex Stark
5 months ago
Join
@stirlingchurchman.bsky.social
,
@moffittlab.bsky.social
,
@saramostafavi.bsky.social
, me and all speakers for the 2026 CSHL meeting Systems Biology: Global Regulation of Gene Expression, March 11-14. Abstract deadline January 9! More infos and registration at
meetings.cshl.edu/meetings.asp...
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Kerstin Göpfrich
5 months ago
Still time to apply until January, 19th!
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The best chromatin kickstart pack you will find this year - please consider it if you want to get in the field or consolidate your skills. Hands on training and top notch speakers!
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6 months ago
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Jacob Schreiber
6 months ago
After a huge amount of work w/
@alex-stark.bsky.social
's group, a new version of our Ledidi preprint is now out! In an era of AI-designed proteins, the next leap will be controlling when, where, and how much of these proteins are expressed in living cells.
www.biorxiv.org/content/10.1...
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Programmatic design and editing of cis-regulatory elements
The development of modern genome editing and DNA synthesis has enabled researchers to edit DNA sequences with high precision but has left unsolved the problem of designing these edits. We introduce Le...
https://www.biorxiv.org/content/10.1101/2025.04.22.650035v2
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Rob Klose
6 months ago
An early Christmas present for those interested in chromatin and transcription! Fantastic work from
@au-ho-yu.bsky.social
and
@aleksszczurek.bsky.social
. Thanks to Inge and Michiel for their help. Please repost!
www.biorxiv.org/content/10.6...
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SET1/MLL complexes control transcription independently of H3K4me3
Histone H3 lysine 4 trimethylation (H3K4me3) at gene promoters is thought to play a central role in gene transcription. H3K4 methylation is deposited by the SET1 (A/B) and MLL (1-4) multi-protein comp...
https://www.biorxiv.org/content/10.64898/2025.12.08.692985v1
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EMBL Events
6 months ago
Are you ready for the 17th edition of 'Transcription and chromatin'? Our conference remains a must-attend event for anyone engaged in the forefront of transcription research and we hope you can join us! 🧬 25 – 28 August 2026 Submit your abstract by 25 May:
s.embl.org/trm26-01-bl
#EMBLTranscript
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Arnaud Krebs
Epigenetics at Helmholtz Munich
6 months ago
👉 Chromatin Summer School 2026 – Apply Now! Join us in Munich 17–29 August 2026 for an immersive program on chromatin biology: 🔬 Expert lectures 🧪 Hands-on training 🤝 Global networking Open to 14 PhD students worldwide (sponsorship available) 👉 Apply here:
bit.ly/4oGDR8f
#ChromatinBiology
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Summary - Summer School on Chromatin Biology: A Hands-On Expedition
https://bit.ly/4oGDR8f
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Karolin Luger
6 months ago
Its out!!!
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Rob Schneider
6 months ago
Please RT 📧 Registration open for ➡️"Summer School on Chromatin Biology" Our 2 weeks hands on expedition 🧪👩💻August 2026. 3. edition. Learn CUT@Tag, CUT@Run, ChIPseq, ATACseq AND to analyse your own data at
@helmholtzmunich.bsky.social
Daily letures by experts in the field ! ▶️
shorturl.at/jrA8i
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Wyeth Wasserman
6 months ago
It's always exciting when the latest edition of JASPAR comes out. Great leadership by
@amathelier.bsky.social
and pleased to welcome
@anshulkundaje.bsky.social
to the journey.
#Jaspar2026
academic.oup.com/nar/advance-...
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Arnaud Krebs
Zeitlinger Lab
6 months ago
We are pleased to announce a new preprint by
@mlweilert.bsky.social
: “Widespread low-affinity motifs enhance chromatin accessibility and regulatory potential in mESCs” (
www.biorxiv.org/content/10.1...
). See summary and longer recap below: (TLDR; low-affinity motifs matter as pioneers!)
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Widespread low-affinity motifs enhance chromatin accessibility and regulatory potential in mESCs
Low-affinity transcription factor (TF) motifs are an important element of the cis-regulatory code, yet they are notoriously difficult to map and mechanistically incompletely understood, limiting our a...
https://www.biorxiv.org/content/10.1101/2025.11.18.685822v1
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Uwe Ohler
6 months ago
Deadline is coming up soon!!
www.mdc-berlin.de/career/jobs/...
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Six AI Fellowships in Human Health
Six Independent Fellow Positions in Artificial Intelligence for Human Health in Berlin
https://www.mdc-berlin.de/career/jobs/six-ai-fellowships-human-health
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Arnaud Krebs
7 months ago
The 21st Course on Epigenetics which will take place from March 25th to April 1st, 2026 at the Institut Curie (Paris). The Course is open to M2 and PhD students. Application via the Advanced Training Office website before December 15th, 2025 at:
minilien.curie.fr/3avv47
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Epigenetics - 21st Course on Epigenetics 2026: Towards a quantitative understanding of nuclear dynamics during development and diseases | Institut Curie Advanced Training
The aim of this course is to provide an overview of epigenetic mechanisms and their links to gene expression and chromatin dynamics, in different systems. The diverse functions of the nucleus involvin...
http://minilien.curie.fr/3avv47
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And the science is amazing! Apply!
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6 months ago
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Max Planck Institute of Immunobiology and Epigenetics
7 months ago
This Thursday, we’re pleased to welcome Philipp Korber. Prof Korber leads a research group on “Nucleosome Positioning & Remodeling in Yeasts” at the
@bmc-lmu.bsky.social
in Munich. His work has identified ATP-dependent chromatin remodelers as major determinants of nucleosome positioning. Join us!
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Tanmay Bharat
7 months ago
An Asgard archaeon with internal membrane compartments Brilliant study led by
@fmacleod.bsky.social
and Andriko von Kügelgen. Tight collaboration with
@buzzbaum.bsky.social
and lab. Congrats to all authors!
www.biorxiv.org/content/10.1...
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Ewan Birney
7 months ago
Vous êtes étudiant(e) en informatique, ingénierie ou mathématiques dans une université ou une grande école ? La biologie et le fonctionnement du vivant vous intéressent ? Envie d'élargir vos horizons ? Ce stage pourrait vous convenir.
www.ebi.ac.uk/about/jobs/i...
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EMBL-EBI / Embassy of France in London Internships
In collaboration with the Embassy of France in London, we are offering a number of paid internships to computer-science, statistics and bioinformatics students.
https://www.ebi.ac.uk/about/jobs/internships/embl-ebi-french-embassy-london-internships/
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Chris Estell
8 months ago
Ding ding! New Restrictor paper out showing that ZC3H4 affects transcription universally at a checkpoint downstream and distinct to Integrator! Sequential verification of transcription by Integrator and Restrictor: Molecular Cell
www.cell.com/molecular-ce...
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Sequential verification of transcription by Integrator and Restrictor
Estell and Łazowski et al. show that Integrator and Restrictor form distinct pathways for early attenuation of RNA polymerase II: Integrator acts at the promoter-proximal pause site, whereas Restricto...
https://www.cell.com/molecular-cell/fulltext/S1097-2765%2825%2900785-3
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Yad Ghavi-Helm
8 months ago
Ever wondered what drives enhancer-promoter specificity? Why would an enhancer activate one gene rather than another neighboring one? Check our latest preprint, led by
@mmasoura.bsky.social
, to find out!
www.biorxiv.org/content/10.1...
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Promoter-proximal gatekeepers restrict pleiotropic enhancer inputs to achieve tissue specificity
Developmental enhancers are central regulatory elements that can activate multiple genes, yet how they selectively regulate one gene over its neighbours remains unclear. Using the Drosophila twist E3 ...
https://www.biorxiv.org/content/10.1101/2025.09.23.678065v2
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