CSHL Meetings
@cshlmeetings.bsky.social
📤 311
📥 31
📝 65
CSHL meetings and conferences: Facilitating the latest ideas in the biological sciences since 1933.
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CSHL Meetings
Simon Wengert
5 days ago
Midway through the CSHL Symposium on AI in Biology and this far it's been a blast! Tomorrow I will be presenting our work on genomic foundation models for large-scale biomedical data analysis in poster session #3, 4:30 pm, poster #291. Come find me to connect and discuss :)
#cshlsymp26
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CSHL Meetings
Cigdem Ak, PhD
8 days ago
Made it to
#cshlsymp26
Let me know if you’re around or come to my presentation, let’s connect!
@cshlmeetings.bsky.social
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CSHL Meetings
bonohu
7 days ago
My poster presentation today! "AI-based Meta-Analysis of Omics Data from Public Databases" #70 at 90th Cold Spring Harbor Laboratory Symposium on Quantitative Biology AI in Biology
#cshlsymp26
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CSHL Meetings
Ewan Birney
7 days ago
Now to Anshul Kundaje
@anshulkundaje.bsky.social
- (another legend!) - on decoding regulatory DNA. He starts with the classic epigenomics roadmap cube (makes me nostalgic) but it's the same basic problem as AlphaGenome (editorial - Anshul is going to have a very different take on this)
#cshlsymp26
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CSHL Meetings
Ewan Birney
7 days ago
Made it to
#cshlsymp26
and will be doing some intermittent posting on the AI symposium here - starting with the wonderful Žiga Avsec from Google Deep Mind on AlphaGenome (editorial - it is rather great to see many Europeans - Londoners included! - at this meeting)
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The 90th CSHL Symposium: AI in Biology starts tonight!
#cshlsymp26
8 days ago
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CSHL Meetings
Susanne Foitzik
14 days ago
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We are hosting the 51st annual meeting on Retroviruses this week! Use
#cshlretro
for all your posts!
14 days ago
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Due to exceptionally strong interest, the 2026 CSHL Symposium: AI in Biology is oversubscribed. However, VIRTUAL REGISTRATION is still OPEN! Register here:
bit.ly/4uYaHVN
loading . . .
90th Symposium: AI in Biology
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
http://bit.ly/4uYaHVN
15 days ago
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Our brand new meeting Brain Body Physiology starts tonight! Use
#cshlbrainbod
for all your posts! 🧠
22 days ago
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
Alexis
@alexisbattle.bsky.social
did an awesome introduction for Jonathan’s
@jkpritch.bsky.social
for his
#BoG2026
keynote! That was reaaaally good! 👏🏽 👏🏽
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
En
#BoG2026
hubo varixs mexicanxs 🇲🇽 o científicxs trabajando con datos de México🇲🇽 Me da gusto 😊 aprender de sus contribuciones a la ciencia. Esta vez hubo proyectos del Mexican Biobank
doi.org/10.1038/s415...
@cshlmeetings.bsky.social
@valenomics.bsky.social
Ana
@xavierrocarada.bsky.social
Irepan
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
Mohamed
@mabuelanin.bsky.social
included a super cute slide about microtus radiation (referring to new species not ☢️) 🦫🐀 They used
#CiFi
cifi.dennislab.org
which they developed recently. Got chromosome-level scaffolds including several T2T genome 🧬 cases
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
Arang Rhie from
@aphillippy.bsky.social
’s lab told us about there is hidden structural variation on the human acrocentric chromosomes This project benefited from UK Biobank using all hg38 sequences (chrUn_…) More available at
doi.org/10.64898/202...
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
Winston
@timp0.bsky.social
is guiding us through a
#DNAm
journey starting with his paper with
@kasperdhansen.bsky.social
from 2011 Nowadays with
@pacbio.bsky.social
and
@nanoporetech.com
long read DNA data you get DNAm for free! 5mC, 5hmC, brain 🧠 etc 🐇 🕳️
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
Nilah Ioannidis kickstarted
#BoG2026
’s Friday by guiding us through their explorations of how DNA 🧬 sequence prediction models actually perform with unseen sequences Goal: use these models in the clinic for personal genomics to predict individual molecular changes
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
26 days ago
Megan D. Schertzer from
@davidaknowles.bsky.social
’s lab invites us to use « perplexity » from Ecology to measure isoform diversity (or other molecular units). Very thought provoking! 🤔 More at
doi.org/10.1101/2025...
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
Sambhawa Priya
27 days ago
🔬How do clinical exposures shape the gut microbiome, and how do longitudinal clinical–microbiome signatures predict patient outcomes? Come find out at my poster #194 today at 7:30 pm at
@cshlmeetings.bsky.social
Biology of Genomes 2026!
#bog26
@blekhman.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Boxiang
@boxiangliu.bsky.social
showcased
#ISAAC
for computing splicing QTLs
#sQTLs
using single cell data They applied it to DLPFC 🧠 data from 722 donors
github.com/boxiangliula...
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Mateusz Garbulowski et al used custom
#VisiumHD
to study spatial host-microbiome (SHM-seq) interactions They also built
#homic
on top of
#Kraken2
for accurate taxonomic classification of SHM-seq data QR code was deactivated, but go to
github.com/mategarb/homic
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Brian Clearly’s work on « Fundamental errors in
#RNAvelocity
arising from the omission of cell growth » feels like a must read!! Brian shouted out the co-authors in the second slide 👏🏽
#BoG2026
@cshlmeetings.bsky.social
doi.org/10.64898/202...
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Did you miss
#BoG2026
or want to share your work or want to keep learning about great computational biology? Mike
@mikeschatz.bsky.social
invites us to
#BDS26
later this year in November Check
bit.ly/cshl-biodata26
for all the details!
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Mike
@mikeschatz.bsky.social
shared their latest swiss army knife for analyzing pangenome data QR code is broken but just go to
github.com/kjenike/pana...
to learn more ^^ It’s already been used by posters at
#BoG2026
!!
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Alan
@al-murphy.bsky.social
gave a great talk on how to use “continual learning” as a principled training framework for genomic models: to go beyond
#Enformer
,
#AlphaGenome
, etc that were trained only on the reference genome 🧬 There’s lot to read on the QR codes
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
Sean Bresnahan
27 days ago
I ❤️
@cshlmeetings.bsky.social
@cshlnews.bsky.social
! Beautiful place. One of those places that surrounds you with the feelings of wonder/purpose/etc that made you fall in love with science. And there’s a bar!
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
27 days ago
Mike
@mikeschatz.bsky.social
paid tribute to James P. Taylor who was one of the main champions of
#OpenScience
@jxtxfoundation.bsky.social
carries on. Mike introduced the winners of the scholarship to attend
#BoG2026
this year (sponsored by
@pacbio.bsky.social
this yr) 👏🏽
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Gabriel
@gpreising.bsky.social
#LFW
shared work involving INECOL & Centro de Investigaciones Científicas de las Huastecas Aguazarca 🇲🇽 They studied swordtail fishes & their alternative reproductive tactics using long read data Earlier work
doi.org/10.1093/evol...
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Time to learn about NIH (U.S. National Institutes of Health) and NHGRI National Human Genome Research Institute 🧬) at
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
Tim
28 days ago
Delighted to be back at
@cshlmeetings.bsky.social
for Biology of Genomes, a historically important meeting w a really diverse and exciting lineup!
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Aoxing
@aoxing2.bsky.social
gave a great talk at
#BoG2026
(even more considering it was last minute promoted to a talk!) on studying sex chromosome dosage thanks to available biobank data from rare but tolerated sex chromosome trisomies Builds upon
doi.org/10.1016/j.aj...
@cshlmeetings.bsky.social
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CSHL Meetings
Nick Gladman
27 days ago
One of my favorite conferences of the year is happening now at
@cshlnews.bsky.social
! The Biology of Genomes always brings really exciting and thought-provoking research to campus.
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Kyle K Farh is going to tell us about
#PrimateAI-3D
github.com/Illumina/Pri...
which they’ve adapted to estimate S_het First talk with a GitHub link prominently displayed in several slides 🤩 I also liked the title slide with all co-authors listed ✅
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Silvia Pérez-Lluch from
@guigolab.bsky.social
&
#CRGenomica
is the second
#BoG2026
speaker We are learning what Alu repeats could be doing in the human genome 🧬 (10% of it!) through binding of CEBPA
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Katarina Pavlovic is telling us about
#Fiber-TEnCATS
from the Boyle lab built on top of
#nCATS
,
#Fiber-seq
, et al. Long read data that tells us about DNAm and open chromatin in chunks long enough to study L1HS (about 17% of the human genome 🧬)
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Arbel
@arbelharpak.bsky.social
is teaching us about sign bias (the mean direction of allelic effects) across biobanks. This bias is explained by the trait’s skeweness (3rd central moment in statistics)
doi.org/10.64898/202...
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Lifan Liang is going beyond eQTL to study brain 🧠 disorders Lots of single cell multiomic data from human iPSC-derived neurons. Leads to many chromatic accessibility (ca)QTLs upon neuron stimulation. Could help interpret non-coding 🧬 variation in 🧠
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
Sasha
@sashagusevposts.bsky.social
(author of
#FUSION-TWAS
and much more) gets the honor of starting day 2 of
#BoG2026
@cshlmeetings.bsky.social
Time to think about genetics 🧬, statistics, common variants, et al related to complex disorders
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
28 days ago
#TwINFER
by Yogesh Goyal et al for analyzing recently divided cells (aka “twins”) seems interesting Gotta read later the preprint from
doi.org/10.64898/202...
#BoG2026
@cshlmeetings.bsky.social
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CSHL Meetings
🇲🇽 Leonardo Collado-Torres
29 days ago
Yoav
@ygilad.bsky.social
kickstarts
#BoG2026
at
@cshlmeetings.bsky.social
by asking us to be open minded and think beyond biology defined by means. To think about the dispersion / variance.
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#BOG26
begins tonight! 🧬
29 days ago
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Thank you to everyone who came to the thirteenth in CSHL’s series of meetings on the History of Science—Five Decades of Nuclear Receptors: Physiology, Molecular Biology & Pharmacology!
#cshhist26
about 1 month ago
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CSHL Meetings
Cold Spring Harbor Laboratory
about 1 month ago
At CSHL Fellows 40th Symposium, Bruce Stillman announced a multimillion-dollar endowment to fund future scientists. Congrats Fellows!
https://www.newsday.com/news/health/cold-spring-harbor-lab-multimillion-endowment-nnf5yaob?utm_medium=web_share_api&utm_campaign=web_share_api
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CSHL Meetings
Mohamed Abuelanin 🦖
about 2 months ago
Thrilled to share that my abstract was selected for a 15-minute talk at
#bog26
@cshlmeetings.bsky.social
! I'll present our prairie & meadow vole assemblies using CiFi long reads, we built the first chromosome-scale diploid assemblies that fully resolve the Avpr1a duplication linked to pair bonding 🐭
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CSHL Meetings
Fede Fuchs W
about 2 months ago
Regulatory & ncRNA Meeting at Cold Spring Harbor Labs, amazing science and amazing people, will have to come back next time!
#cshlregRNA
@cshlmeetings.bsky.social
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Regulatory & Non-Coding RNAs starts tonight! Share your moments from the meeting this week with us by using
#cshlregrna
about 2 months ago
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Hope everyone enjoyed The PARP Family and ADP-ribosylation meeting!
#cshlparp
about 2 months ago
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Thank you to all of our Neuronal Circuits participants!
#cshlcircuits
🧠
2 months ago
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Thank you to everyone who came to the Systems Biology: Global Regulation of Gene Expression meeting 🧬
#cshlsysbio
2 months ago
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Welcome to all of our Systems Biology: Global Regulation of Gene Expression attendees!
#cshlsysbio
3 months ago
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#cshlsysbio🧬
add a skeleton here at some point
3 months ago
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