After vibe coding a little swift this summer, I feel totally validated by this post! holdtherobot.com/blog/xcode-i...

This is amazing

after a long effort, gathering a lot of input from many people, we finaly put it all together: Ten Common Misconceptions About Galaxy (and Why They Are Wrong!) https://www.preprints.org/manuscript/202509.0823 Thank you very much to all people involved !

minimap2.com is potentially a phishing site. Please don't use anything from that website. github.com/lh3/minimap2...

🎉 Big news! Galaxy Training Network workflows are now automatically registered on WorkflowHub. Easier discovery, citation, & direct Galaxy execution → boosting FAIR & accessible training! training.galaxyproject.org/training-mat...

Please repost! We have an open rank, tenure-line faculty position in biomechanics in the School of Kinesiology at the University of Michigan Ann Arbor. At U-M we have great colleagues, exceptional resources, and biomechanics can be found all across the campus. #BiomechSky

Scholarships available for Genome Informatics - just include a brief summary on your open science work plus your conference abstract. If you have already paid to register, we will work with CSHL to refund you the $$$. Apply today! jxtxfoundation.org/news/2025-6-... @jxtxfoundation.bsky.social

📢🚨📢🚨 Genome Informatics deadline extended to September 8! meetings.cshl.edu/meetings.asp.... Please spread the word. If you are like me and had at least one abstract that wasn't quite ready by last week's deadline, you get another swing. See you there!

Genome Informatics abstract deadline now Sept 8! h/t @benlangmead.bsky.social meetings.cshl.edu/meetings.asp...

Checking out the new JHU student center! Super impressive inside! @jhu.edu

Johns Hopkins researchers including @mikeschatz.bsky.social & @vikramshivakumar.bsky.social have developed Uncalled4, a new software toolkit that can detect epigenetic changes—chemical modifications to normal DNA and RNA that control which genes are turned off and on—with unprecedented accuracy.

🎉 Galaxy has passed 21,000 citations on Google Scholar! A huge thank you to the global community of researchers who use and advance Galaxy for open, reproducible science.

Just started! openai.com/live/

Missed GBCC2025? Want to rewatch your favorite talks? All session recordings (including Galaxy Live!) are now available on our YouTube channel. Revisit the presentations, explore new tools and workflows, and catch up on sessions you may have missed. Watch here: youtube.com/playlist?lis...

Just failed a CAPTCHA challenge to join a MS Teams call, but I cant decide if this is a feature or a bug

Congratulations @benlangmead.bsky.social!

Congratulations to @benlangmead.bsky.social on his promotion to full professor! 🎉 Prof. Langmead is recognized across the computational and life sciences fields for his innovative methods helping to transform how biomedical researchers and other life scientists access and use DNA sequencing data. 🧬

www.cell.com/patterns/ful... #bioconductor #rstats

ggplot2 4.0.0 is coming soon, and is moving some of the internals from S3 to the new S7 OOP system. This is worth a read if you're developing packages with ggplot2 (bioconductor or otherwise) blog.bioconductor.org/posts/2025-0... #Rstats

Love this CoFest energy! Great to see Galaxy and Bioconductor developers working side-by-side at #GBCC2025, exploring, coding, and learning from each other 💻💙 @galaxyproject.bsky.social @bioconductor.bsky.social

Awesome time closing out GBCC with our hands on CoFest! Lots of fun writing code, updating trainings and building out the ecosystems- I submitted my first PR to the core Galaxy repo. Special thanks to Chris Mason for hosting us at Weill Cornell. @galaxyproject.bsky.social @bioconductor.bsky.social

That’s a wrap on GBCC2025! It was incredible to see all the awesome developments, science, and training coming from the community - the future is bright for Galaxy and Bioconductor! @galaxyproject.bsky.social @bioconductor.bsky.social @cshlnews.bsky.social

Getting into computational biology this summer? 🏖️ 📖 Check out “Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References” by @arun-das.bsky.social‬, @mikeschatz.bsky.social, and more for a great introduction to the field:

The first Galaxy / Bioconductor joint conference #GBCC2025 starts next week at CSHL! If anyone wants to connect feel free to reach out here. Lightning talks signup form coming soon...

Awesome first night of the Galaxy and Bioconductor community conference at CSHL. The GBCC Live demo was the star showing off how to connect the communities through a detailed spatial omics tumor analysis. #GBCC2025 @galaxyproject.bsky.social @bioconductor.bsky.social @cshlmeetings.bsky.social

🎉 GBCC2025 kicks off today! We’re gathering at Cold Spring Harbor to welcome attendees, reconnect with colleagues, and gear up for an exciting week of science, training, and community. Stay tuned! gbcc2025.bioconductor.org

Kicking off the GRADS-4C symposium to advance genomics and genomic data science for all! @ncatsuaggies.bsky.social @blueyedgenes.bsky.social

Very excited to share I’ll be starting my own group at University of Utah in the Department of Human Genetics in the new year! Reach out if you are interested! vollgerlab.com

These are not just grants. This is thousands of people who devoted their lives and careers - taking pay cuts, working long hours, living with uncertainty - all for the chance to try to make people's lives a bit better for you and your loved ones. This breaks my heart.

Slides from my talk (with @kamilsjaron.bsky.social) on an history of k-mers in bioinformatics: rayan.chikhi.name/pdf/2025-kme...

The #MLCB deadline has been extended to June 3 (AOE)! Still time to submit your cutting-edge work on machine learning in biology. Don’t miss out! 👉 www.mlcb.org #ComputationalBiology #ML4Bio

Today (June 1) marks the 20th anniversary of Galaxy! Thanks to all the developers, admins, researchers, trainers, educators, students and more that have made up this amazing community. Here is to the next 20 years! @galaxyproject.bsky.social @jxtxfoundation.bsky.social galaxyproject.org

Phage people: Rich Losick and I are combing the world looking for T4 rIIB mutant FC0 (also known as P13). FC0 was the starting point for Francis Crick's beautiful 1961 paper on the triplet nature of the genetic code. We want to sequence it. Anyone have it in an ancient stock collection?

We had a bunch of requests so we're extending the #MLCB2025 deadline to June 3rd (anywhere on earth)! cmt3.research.microsoft.com/MLCB2025 to submit.

By doing the work that led to the discovery of dark energy, Adam Riess won a Nobel Prize and helped add the final piece to the “standard model of cosmology." Now he says that model might be wrong. Ross Andersen reports:

Up until June 2 (Monday) you can apply for scholarship to attend GBCC2025 at Cold Spring Harbor Laboratory. This is the Bioconductor / Galaxy joint conference at the end of June. You should submit a poster abstract to apply for scholarship. Scholarship details below.

This is pretty amazing! github.com/jupyterlite/... (cc @robert.bio)

Scholarship opportunity to attend GBCC at CSHL next month! Come hear about all the latest advances in genomics, single cell biology, infectious disease, machine learning, data science, and beyond! Hosted by Galaxy & Bioconductor but open to anyone interested in open and reproducible science!

NSF Physics was cut by 85%, basically wiping out most of its capacity for supporting research. NSF Astronomy was cut by 53% Undergrad education was cut by 71% and research on learning by 79% Graduate education was cut by 100% to ZERO. #GiftLink ⚛️🔭 www.nytimes.com/interactive/...

I don't think I posted about this yet. COME WORK WITH US AT NATURE METHODS! This is a rare opportunity, and we can't wait for our new colleague. Feel free to contact me with questions.

Congratulations to Malone Center affiliate member @stephaniehicks.bsky.social on this distinction from @amstatnews.bsky.social!

BDP @mikeschatz.bsky.social was featured on Science Friday and appears on their podcast discussing his research mapping the genomes of 22 varieties of nightshades—the family of plants that includes tomatoes, potatoes, and eggplants. www.sciencefriday.com/person/micha...

This is an amazing talk on the role of somatic mutation and repeat expansion in an inherited genetic disease

Our pre-print on investigating variation in South Asian genomes is now out! Thank you to @mikeschatz.bsky.social, @rajivmccoy.bsky.social and @aabiddanda.bsky.social for all their work on this. 🧵 A thread on the key results and takeaways from our work:

Free in-person registration is open for #MLCB2025! Sept 10-11 at @nygenome.org and online at youtube.com/@mlcbconf. Paper/abstract deadline is June 1, more deets including our fantastic invited speaker lineup at mlcb.org! Please RP.

Keynote talk from Steven McCarroll from last weeks Biology of Genomes conf. My favorite talk of the whole meeting! #bog25 youtu.be/BCRAlmFv7ag?...

NIH is allowing us to recruit postbacs and postdocs again. Please reach out if you are interested in working with us! Ad: genomeinformatics.github.io/jobs2025/

#BOG25 AB: having a paper written by AI judged by AI is my nightmare.

Researchers mapping the genomes of nightshades used CRISPR gene editing to grow bigger tomatoes and eggplants without sacrificing flavor. Dr. @mikeschatz.bsky.social joins us to discuss this research and the current state of genetically modified crops.

. @stephaniehicks.bsky.social giving a master class on spatial genomics analysis - normalization and qc are essential to reveal the underlying biology! #bog25