If you're at Genome Informatics ##GI2025 this week, be sure to stop by the 3 Galaxy posters to chat with Delphine, Mike and Anton about great new things in Galaxy. (1/5)

Congrats to all three recipients! To learn more about the James P. Taylor Foundation for Open Science and this scholarship, go to jxtxfoundation.org/news/2025-01.... Enjoy the conference! [8/8]

His current project integrates RNA-seq data across species to identify conserved and differential gene programs—revealing fundamental principles of gene regulation and evolution. Ryan enjoys playing soccer, hockey, and piano. ⚽🏒🎹 [7/8]

Congrats to Ryan Moreno for winning a JXTX scholarship to Genome Informatics! Ryan is a PhD student in Biomed Data Science at UW-Madison, advised by Dr Sushmita Roy. He leverages evolutionary info to enhance computational analyses of gene regulation and expression. [6/8]

These core areas are essential for extracting meaningful insights from sequencing data. She's also worked analyzing ancient DNA. For fun, Megan enjoys reading, playing bridge and performing on piano and oboe. 🎹🎶 [5/8]

Congrats to Megan Le for winning a JXTX scholarship to Genome Informatics! Megan is a PhD student in Computer Science at MIT, advised by Drs. Heng Li and Bonnie Berger. She develops algorithms for genome analysis, tackling problems in genome assembly, variant calling, and read alignment. [4/8]

Her work tackles challenges in understanding gene expression at the transcript level, with major implications for precision medicine. When not in the lab, you'll find Zoe rock climbing, reading, or hanging out with her cat. 🧬🐱

Congrats to Zoe Rudnick for winning a JXTX scholarship to Genome Informatics! Zoe is a 2nd-year PhD student in Biomedical Engineering at Johns Hopkins, developing algorithms to analyze RNA-seq data—incl long-read and single-cell datasets—to improve isoform quantification.

The James P. Taylor Foundation for Open Science is pleased to announce the recipients of the 2025 JXTX+CSHL Genome Informatics Scholarships. JXTX provides support for students to attend conferences in CompBio and data science, where they can present their work [1/8]

🧠 Your Galaxy history too complex? Name tags make it easy to track dataset origins and relationships across analyses—no endless renaming needed https://galaxyproject.org/news/2025-11-4-tags/ ##GalaxyProject ##Bioinformatics ##Reproducibility

🌿 Ready to hack biodiversity with Galaxy? Join the GTN Ecology Training & Collaboration Fest — three days of hands-on learning, data exploration, and open-science fun! 📅 Nov 25–27 | Hybrid (Concarneau 🇫🇷 + online) 📝 Register for free by Nov 20 training.galaxyproject.org/training-mat...

🐛 Galaxy not working? Don't suffer in silence — report it! Use the built-in reporting feature when something goes wrong. Read more here: https://galaxyproject.org/news/2025-10-30-squish-the-bug/ Let's make Galaxy better together!

Workflows by day, French wine and cheese by night 🍷🧀 Get ready to join us in Clermont-Ferrand, France for #GCC2026, June 22–26 2026! Learn, collaborate, and celebrate open science in the heart of Auvergne. galaxyproject.org/news/2025-10...

RSpace joins the Galaxy https://galaxyproject.org/news/2025-06-23-rspace-integration/ @researchspace.com ##UseGalaxy ##GalaxyProject ##EOSC ##ELN ##RDM ##RSpace

There is a little known Galaxy feature called "window manager". See how to use it ... https://galaxyproject.org/news/2025-10-28-window-manager/

🌿 Will you be at #PAG33? Galaxy will be in San Diego for the International Plant & Animal Genome Conference (Jan 9–14, 2026), and we’d love to know who from the Galaxy Community will be there! Let us know 👉 forms.gle/26PRwMH46aho...

Know How Sciensano harnesses Galaxy for Advanced Microbial Genomics, Precision Typing, and Rapid Outbreak Detection http://galaxyproject.org/news/2025-04-25-galaxy-at-sciensano/ ##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway

Use parallel-download to get data from NCBI SRA. See how here -> https://galaxyproject.org/news/2025-10-23-sra-download/

Specification for RO-Crate 1.2 released https://galaxyproject.org/news/2025-06-04-ro-crate-1-2-release/ ##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway ##rocrate ##fair ##research_data ##research ##data

📝 New blog post Released! https://galaxyproject.org/news/2025-02-13-cellxgene-vip/ CELLxGENE-VIP (Visualization In Plugin) is an extension of the original CELLxGENE: https://github.com/chanzuckerberg/cellxgene tool developed by the Chan Zuckerberg Initiative. It can efficiently extract deep (1/4)

Galactic views on the Conference on Research Data Infrastructure (CoRDI): https://galaxyproject.org/news/2025-08-29-cordi/ ##UseGalaxy ##GalaxyProject ##NFDI ##UniFreiburg ##RDM

Discover one of Galaxy’s true superpowers — dataset collections! 🌟 Check out the blog (https://galaxyproject.org/news/2025-10-21-whycollections/) and video (https://youtu.be/yehY9tR_NX8?si=YH9CZ5KGWm2yVyPA) to see how they can simplify your workflows. You might just find yourself wondering, (1/2)

My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy. https://galaxyproject.org/news/2025-07-22-ming-li-internship/ ##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)

How do you train the next generation of open-science explorers? With Galaxy, collaboration, and a bit of computational magic. https://training.galaxyproject.org/training-material/news/2025/07/17/gta-overview.html ##UseGalaxy ##GalaxyProject ##EOSC ##GalaxyTraining ##OpenScience ##Bioinformatics (1/2)

Science, volcanoes, and the Galaxy community...what more could you ask for? 🌋🇫 In case you missed it! The Galaxy Community Conference (#GCC2026) lands in Clermont-Ferrand, France, June 22–24, 2026! CoFest follows from June 25–26. Learn more and sign up for emails: galaxyproject.org/events/gcc20...

Flexynesis: bridging multi-omics complexity with transparent AI for Cancer research and beyond https://galaxyproject.org/news/2025-10-16-flexynesis-nature-comms/ ##UseGalaxy ##GalaxyProject ##EOSC ##UniFreiburg ##NatureCommunications ##ScientificResearch ##deeplearning ##precision_medicine ##open_science

Comprehensive Single-Cell Reference Atlases Ready for Import https://galaxyproject.org/news/2025-10-16-tabula-atlas/ ##UseGalaxy ##GalaxyProject ##EOSC ##UniFreiburg ##Single-cell ##tabula_sapiens ##Tabula_muris_senis

1–3 Oct 2025, Freiburg: European Galaxy Days, ELIXIR Galaxy, and EuroScienceGateway members convened to align roadmaps and turn plans into solutions, tools, and workflows through talks, demos, and a CoFest. https://galaxyproject.org/news/2025-10-15-egd2025/ ##UseGalaxy ##GalaxyProject ##EOSC (1/2)

Bootcamp success story: see how The Open University trained 80+ learners with TIAAS behind the scenes. https://training.galaxyproject.org/training-material/news/2025/07/03/bb-tiaas.html ##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##OpenScience ##OpenEducation ##Training ##Infrastructure (1/2)

Data locality meets open science: discover how Galaxy and Onedata make high-performance analysis easier and FAIRer. https://training.galaxyproject.org/training-material/news/2025/03/17/galaxy-meets-onedata.html ##UseGalaxy ##GalaxyProject ##UniFreiburg ##EOSC ##EuroScienceGateway (1/2)

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025. https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/ (1/2)

Galaxy can be adjusted for sensitive data. In the Netherlands, a GDPR-compliant Galaxy clone runs in an isolated network, converting Toolshed tools to Apptainer containers—secure, auditable, and reproducible. Read more: https://galaxyproject.org/news/2025-01-20-esg-w-p5/ ##UseGalaxy (1/2)

An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface. http://galaxyproject.org/news/2025-04-11-galaxy-to-notebook-g2nb/ ##UseGalaxy ##GalaxyProject ##EOSC (1/2)

Open Science dives deep! AquaINFRA integrates Galaxy into their ecosystem—empowering researchers to access, analyze, and share aquatic & marine data through FAIR workflows. https://galaxyproject.org/news/2025-04-07-aquainfra-eosc-and-galaxy/ ##UseGalaxy ##GalaxyProject ##EOSC (1/2)

If you missed the inaugural all-BRC webinar last week, a video is available on YouTube: https://youtu.be/DtuD2YTCT30 Presenters introduced the three BRCs (BV-BRC, PDN and BRC-Analytics) in a tight 30 minutes. @bvbrc.bsky.social @brcanalytics.bsky.social

Galaxy 25.0 steps up the game in data management. Now you can set up and manage InvenioRDM / Zenodo (or S3, Dropbox, etc.) integrations from a dedicated section in User Preferences — clean UI, prioritized sources, and true “Export datasets” support. Read more: (1/2)

Nearly a year ago, the EuroScienceGateway project showed how Galaxy + Pulsar could run on the EOSC EU Node — a major leap for federated ##OpenScience. Still worth revisiting as we keep building FAIR, scalable research infrastructure. https://galaxyproject.org/news/2025-01-29-esg-eosc/ (1/2)

Galaxy isn’t just for genomics — it’s powering new discoveries in materials science too. This μSR study on redox-active metal hydrides used Galaxy to explore hydrogen radical chemistry in {2Fe2S} centers — a fine example of cross-disciplinary ##OpenScience. (1/3)

New workflow from the Galaxy Community! A reproducible workflow for microbial gene analysis (open, FAIR, and ready to explore). Explore the power of Galaxy for microbiome and genomics research: https://galaxyproject.org/news/2025-09-26-microbial-gene-workflow/ ##Bioinformatics (1/2)

We are pleased to announce a new release of https://BRC-Analytics.org (v0.16.0). This release updates the number of included organisms to 1400+ and a nearly 2000 assemblies (adding many bacteria and helminths), and some significant improvements to searching ENA and the workflow config UI. (1/2)

Teaching NGS to wet lab scientists got a whole lot easier once I discovered TIaaS and the Galaxy platform. https://galaxyproject.org/news/2025-05-05-empowering-wet-lab-scientists-with-ngs-analysis-skills-without-coding-barriers/ ##eurosciencegateway ##galaxyproject ##teaching ##infrastructure (1/2)

The Galaxy Tool Development Workshop kicked off a new series of events to strengthen our tool ecosystem! This inaugural session, held for the Galaxy EU team, focused on best practices, collaboration, and reproducible development. Catch the recap: (1/2)

From public-health genomics to hibernating hedgehogs (and even turtle conservation), discover what’s new in Galaxy. Plus upcoming events, workshops, and fresh GTN highlights! https://galaxyproject.org/news/2025-09-29-galaxy-newsletter-sep2025/ ##GalaxyProject ##Bioinformatics ##OpenScience (1/2)

From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025 https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025 ##OpenScience ##ReproducibleResearch ##GalaxyProject ##ROCrate ##WorkflowHub ##Bioinformatics ##FAIRData ##ResearchTools (1/2)

New tutorial from the Galaxy Training Network! Learn how to quantify gel electrophoresis bands using QuPath + Galaxy. Fully open, reproducible, and beginner-friendly. https://training.galaxyproject.org/training-material/news/2025/08/18/bands_image_analysis.html ##Bioinformatics (1/2)

Thanks to TIaaS, our RNA-Seq workshops run smoothly—no more delays, just effective hands-on learning. https://galaxyproject.org/news/2025-05-23-tiaas-success-story-toivonen/ ##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway ##training ##infrastructure ##teaching

Introducing Galaxy and Digital Humanities on site https://galaxyproject.org/news/2025-05-19-dh-lab/ ##UseGalaxy ##GalaxyProject ##EOSC ##digital_humanities ##social_science

Access powerful Large Language Models in Galaxy easily https://galaxyproject.org/news/2025-10-10-llm-hub/ ##UseGalaxy ##GalaxyProject ##EOSC ##ai ##machine_learning ##llm ##large_language_model ##open_ai ##deepseek ##mistral ##meta ##image_models ##multimodal_models ##gpt

Open-Source Visualization for Imaging-Based Spatial Transcriptomics http://galaxyproject.org/news/2025-04-26-bellavista-it/ ##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway

🌋 Save the date! GCC2026 is coming to Clermont-Ferrand, France 🇫🇷, June 22–24, 2026 Join the global Galaxy community for talks, training, posters & collaboration in the heart of the French volcanoes! Sign up for our GCC2026 mailing list, here: gaggle.email/join/gcc2026...