Guigó Lab
@guigolab.bsky.social
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📥 57
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Roderic Guigó's Computational Biology of RNA Processing Lab
@crg.eu
https://genome.crg.cat/
reposted by
Guigó Lab
Arnau Sebé-Pedrós
4 days ago
Happy to share the Biodiversity Cell Atlas white paper, out today in
@nature.com
. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life.
www.nature.com/articles/s41...
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🌍✨ Master’s project in our Lab
@crg.eu
🌱🧬 Help build the Biodiversity Long-Read Transcriptomic Catalogue
@ebpgenome.bsky.social
with
@pacbio.bsky.social
&
@nanoporetech.com
💻 Python/R, Linux, seq data 💶 600€/mo + travel 📩
[email protected]
/
[email protected]
ℹ️
www.crg.eu/en/content/t...
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Centre for Genomic Regulation Website
https://www.crg.eu/en/content/training/undergraduates-and-masters
6 days ago
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🚨 We are hiring a Postdoc
@crg.eu
! 🧬 Within the EU-funded
#PrecisionTox
project. We are developing computational methods to predict toxicity by integrating RNA-seq data from humans and model species 🪱🪰🐸🐠. The project will help replace animal testing. 🔗 Apply now:
recruitment.crg.eu/content/jobs...
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Post-Doctoral Researcher for Precision Tox | CRG Online Recruitment Portal
The Centre for Genomic Regulation (CRG) is an international biomedical research institute of excellence, based in Barcelona, Spain, with more than 400 scientists from 44 countries. The CRG is composed by an interdisciplinary, motivated and creative scientific team which is supported both by a flexible and efficient administration and by high-end and innovative technologies.
https://recruitment.crg.eu/content/jobs/position/post-doctoral-researcher-precision-tox
2 months ago
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🎉 We’ve earned Bronze LEAF Accreditation for our efforts to make lab work more sustainable
@crg.eu
! By joining
@ucl.ac.uk
Laboratory Efficiency Assessment Framework, we are committed to improving efficiency and reducing our environmental impact. 🌱🔬
2 months ago
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🎓 Huge congrats to our two
@bist.eu
Master’s students, Igor Trujnara and
@rebeccawallis.bsky.social
who successfully defended their theses this week! 🧬💻Igor explored Large Language Models for genome annotation, while Rebecca investigated microbial biodiversity in Pyrenean lakes🏔️.
@crg.eu
@upf.edu
2 months ago
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🚴🏻🚴🏻♀️🚴🏻♂️ Read about Ana, Fabio & Nadja’s journey to the LongTREC Summer School in Norwich!
#LongTREC
#ScienceOnTheMove
#SustainableScience
#Bioinformatics
#ScienceLife
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2 months ago
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Great to see our PhD student Fabio Zanarello sharing his work yesterday at LongTREC summer school!
#LongReadsTranscriptomics
#LongTREC
#GenomeAnnotation
#Bioinformatics
#EarthBioGenomeProject
@crg.eu
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2 months ago
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reposted by
Guigó Lab
Ana Conesa
3 months ago
We made it!!!! València-London by train. London-Norwich by bike!!!
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reposted by
Guigó Lab
LongTREC
3 months ago
First journey done! 🌟 Our amazing cyclists arrived safely in Cambridge — still smiling! 😄🚴♀️ More than the ride: sustainability, team spirit & pushing limits. They’re recharging now… and ready for the next leg!
#LongCyclingForScience
#TeamSpirit
@anaconesa.bsky.social
#LeadingByExample
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reposted by
Guigó Lab
LongTREC
3 months ago
Not everyone can or wants to cycle for 2–3 days, but we can all take a moment to ask ourselves: 💡 “How much am I impacting the planet with this trip?” 💡 “What can I do to reduce that impact?”
@anaconesa.bsky.social
#LongCyclingForScience
#SustainableScience
#LongReadsTranscriptomics
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🚴 From
@crg.eu
to the roads of Europe, our PhD student Fabio and the
#LongTREC
team are combining cutting-edge science with sustainable travel. Now in London, and heading next to Cambridge!
#LongCyclingForScience
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3 months ago
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🚴♂️🌍 Excited to see our PhD student Fabio Zanarello featured in the
#LongTREC
video series! 👏 Don’t miss the video and learn more about
#LongTREC
#LongReadsTranscriptomics
and
#LongCyclingForScience
.
#SustainableScience
#Bioinformatics
#PhDLife
@crg.eu
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3 months ago
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reposted by
Guigó Lab
Ana Conesa
3 months ago
This is going to be so much fun!!! Do not miss our
#LongCyclingForSciene
adventure! from Valencia to Norwich by train & bike, posting about science and bcsustainability
@pacbio.bsky.social
@nanoporetech.com
@iscb.bsky.social
@csic.es
@hitseq.bsky.social
@bcbhubcsic.bsky.social
@sebibc.bsky.social
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📊 RNA localization matters for gene regulation. We present a method to estimate transcript distributions between nucleus & cytosol using nuclear, cytosolic and whole-cell RNAseq. 🔵🧬
doi.org/10.1093/narg...
@crg.eu
@rodericguigo.bsky.social
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Studying relative RNA localization from nucleus to the cytosol
Abstract. The precise coordination of important biological processes, such as differentiation and development, relies heavily on the regulation of gene exp
https://doi.org/10.1093/nargab/lqaf032
3 months ago
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reposted by
Guigó Lab
Pau Clavell-Revelles
4 months ago
I am so happy to learn that I won the Early Career Award for an outstanding presentation at the ESHG!! Thanks to
@melelab.bsky.social
,
@guigolab.bsky.social
and to my awesome colleagues that also attended the conference for their support
@rubenchazarra.bsky.social
@ramirezjmiguel.bsky.social
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Our lab had dual presence at
#BoG25
@cshlmeetings.bsky.social
! 🧬 Silvia González-López spoke on chromatin dynamics & transcriptional regulation. 🌍
@fairlie.bsky.social
presented ancestry-aware gene annotations — a
@guigolab.bsky.social
×
@melelab.bsky.social
collab:
www.biorxiv.org/content/10.1...
5 months ago
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Exciting day in the lab, congratulations to Dr. Ntasis on successfully defending! 🎓🥳
5 months ago
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reposted by
Guigó Lab
Rebecca Wallis D
5 months ago
Had a great time at the Computational Symposium- such a valuable opportunity to connect with colleagues, hear about exciting projects, and share progress on my master’s research! Presenting my work on the Pyrenean Lake microbiome has been invaluable for gathering feedback and ideas for my analysis 🙂
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This week, we had a great time attending the 19th Computational Genomics Symposium at
@prbb.org
, a very nice opportunity to catch up with colleagues 💻🧬☀️
@crg.eu
5 months ago
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reposted by
Guigó Lab
UCSC Genome Browser
6 months ago
A new hub has been added to the Public Hubs listing, EPIration - an atlas of candidate enhancer-gene interactions in human tissues and cell lines. View this hub using the following URL:
genome.ucsc.edu/cgi-...
We want to thank the
@guigolab.bsky.social
for making this data available.
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🚀 Our new paper is out! The BioGenome Portal: an open-source customizable platform for managing biodiversity genomics data 🧬🌍
doi.org/10.1093/narg...
@crg.eu
@rodericguigo.bsky.social
#genomics
#biodiversity
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The BioGenome Portal: a web-based platform for biodiversity genomics data management
Abstract. Biodiversity genomics projects are underway with the aim of sequencing the genomes of all eukaryotic species on Earth. Here we describe the BioGe
https://academic.oup.com/nargab/article/7/1/lqaf020/8090330?utm_source=advanceaccess&utm_campaign=nargab&utm_medium=email
6 months ago
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reposted by
Guigó Lab
Marta Melé
6 months ago
This has been a fantastic collaboration with
@guigolab.bsky.social
and led by
@pclavell.bsky.social
&
@fairlie.bsky.social
where we show something we suspected for some time: human gene annotations are European-biased, read this thread to know more about this work
@bsc-cns.bsky.social
@crg.eu
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reposted by
Guigó Lab
Pau Clavell-Revelles
6 months ago
I never thought that I would wear again the lab coat 🥼 but I did it to sequence RNA with
@nanoporetech.com
at
@guigolab.bsky.social
. Thanks to
@scarbonells.bsky.social
, Carme and Zighi for their great teachings and patience in the wetlab. They definitely have solutions for everything!
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reposted by
Guigó Lab
Melé Lab
6 months ago
Do you work in 💫human genetics💫? Have you ever worried about what’s inside your gene annotation GTF⁉️ WELL, YOU SHOULD! 😱 Especially when studying a genetically diverse 🌍 cohort! 🔴We discover that gene annotations are European-biased 👉 impacting downstream analyses! Don't miss this thread🧵⬇️ 1/13
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Long-read transcriptomics of a diverse human cohort reveals widespread ancestry bias in gene annotation
Accurate gene annotations are fundamental for interpreting genetic variation, cellular function, and disease mechanisms. However, current human gene annotations are largely derived from transcriptomic...
https://www.biorxiv.org/content/10.1101/2025.03.14.643250v1
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reposted by
Guigó Lab
Winona Oliveros
6 months ago
I am SO EXCITED about this! An incredible amount of work from two brilliant people. I believe a bluetorial is on the way, stay tuned! 💜
@fairlie.bsky.social
@pclavell.bsky.social
@melelab.bsky.social
@guigolab.bsky.social
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Hi Bluesky! Excited to be here! Last week we had our yearly retreat in the mountains, enjoying nature, games, and discussions 🏔️🧬😊
7 months ago
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