Arbel Harpak
@arbelharpak.bsky.social
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📥 228
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Evolutionary, statistical and population genetics at UT Austin.
http://www.harpaklab.com
reposted by
Arbel Harpak
Roshni Patel
about 2 months ago
Bittersweet to be leaving
@docedge.bsky.social
after a wonderful postdoc, but excited to share that I'm joining
@uoregon.bsky.social
next month as an Assistant Professor in the Department of Data Science.
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Arbel Harpak
about 2 months ago
1/13 In a new preprint, we (with
@xliaoyi.bsky.social
‬ in the ‪@arbelharpak.bsky.social‬ lab) find that expression from the “inactivated” X (Xi) is consequential for both female-male differences in gene expression and variation among females in disease and physiology:
www.biorxiv.org/content/10.1...
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Escape from X inactivation drives sex differences and female trait variation
X chromosome inactivation (XCI) partially balances gene dosage between sexes, yet expression from the inactive X (Xi) is variable across genes. In this study, we investigate whether gene-level Xi expr...
https://www.biorxiv.org/content/10.1101/2025.08.01.668097v1
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Arbel Harpak
Integrative Biology - UT Austin
about 2 months ago
Applications for the 2026 Stengl-Wyer Scholars Program are open! The program provides up to 3 years of support for talented postdoctoral researchers in the broad area of the diversity of life and/or organisms in their natural environments. Learn more here:
utexas.infoready4.com/CompetitionS...
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Arbel Harpak
Molly Przeworski
5 months ago
Amidst all the terrible and terrifying news, so lovely to hear of
@jkpritch.bsky.social
's election to the National Academy of Sciences. Congratulations!
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Arbel Harpak
Roshni Patel
5 months ago
a quick note on my paper with
@jeffspence.bsky.social
and
@jkpritch.bsky.social
on conditional frequency spectra, now out in a
@genetics-gsa.bsky.social
special issue:
doi.org/10.1093/genetics/iyae210
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Characterizing selection on complex traits through conditional frequency spectra
Abstract. Natural selection on complex traits is difficult to study in part due to the ascertainment inherent to genome-wide association studies (GWAS). Th
https://doi.org/10.1093/genetics/iyae210
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Arbel Harpak
Sasha Gusev
6 months ago
More recently, Smith et al. (
biorxiv.org/content/10.1...
) proposed an estimator of polygenic score confounding that can be directly attributable to stratification/ancestry. They show that it is present in target data from Europe, other continents, even ancient DNA!
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Arbel Harpak
Sasha Gusev
6 months ago
I wrote about how population stratification in genetic analyses led to a decade of false findings and almost certainly continues to bias emerging results. But we are starting to have statistical tools to sniff it out. A đź§µ:
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How population stratification led to a decade of sensationally false genetic findings
Stratification makes environments look like genes
https://open.substack.com/pub/theinfinitesimal/p/how-population-stratification-led?r=43f9ax&utm_campaign=post&utm_medium=web&showWelcomeOnShare=true
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Arbel Harpak
Judd Legum
8 months ago
BREAKING The Trump administration is maintaining a funding freeze at the National Institutes of Health (NIH) in defiance of two federal court orders. The ongoing freeze was confirmed by an NIH official and internal correspondence reviewed by Popular Information.
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Trump maintains funding freeze at NIH, defying court order
The Trump administration is still prohibiting National Institutes of Health (NIH) staff from issuing virtually all grant funding, an NIH official tells Popular Information.
https://popular.info/p/trump-maintains-funding-freeze-at
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Arbel Harpak
C. Brandon Ogbunu
8 months ago
"One thing is certain: The changes we make ourselves will be healthier than the ones our adversaries demand." New work for
@undark.org
:
undark.org/2025/02/06/o...
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The End of Science’s Peacetime
Opinion | Defending the practice of science from its adversaries will require dealing with some uncomfortable truths.
https://undark.org/2025/02/06/opinion-end-of-science-peacetime/
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Arbel Harpak
Samuel Pattillo Smith
8 months ago
Think of a polygenic score you care about. Are direct genetic effects driving variation among people in this predictor? Or perhaps other, confounding factors? We at the
@arbelharpak.bsky.social
&
@docedge.bsky.social
Labs developed a method to tackle this question. [1/n]
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A Litmus Test for Confounding in Polygenic Scores
Polygenic scores (PGSs) are being rapidly adopted for trait prediction in the clinic and beyond. PGSs are often thought of as capturing the direct genetic effect of one's genotype on their phenotype. ...
https://www.biorxiv.org/content/10.1101/2025.02.01.635985v1
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Arbel Harpak
Molly Przeworski
8 months ago
“The distribution of highly deleterious variants across human ancestry groups”. Preprint with Anastasia Stolyarova and
@gcbias.bsky.social
:
www.biorxiv.org/content/10.1...
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The distribution of highly deleterious variants across human ancestry groups
A major focus of human genetics is to map severe disease mutations. Increasingly that goal is understood as requiring huge numbers of people to be sequenced from every broadly-defined genetic ancestry...
https://www.biorxiv.org/content/10.1101/2025.01.31.635988v1
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Arbel Harpak
Matt Rockman
8 months ago
Undergrads: apply to NYU's Summer Undergraduate Research Program in Biology! 10 weeks of research in a structured setting, featuring terrific mentors, exciting biology, housing in New York, and a stipend.
as.nyu.edu/biology/outr...
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Simons Foundation-NYU Biology Summer Undergraduate Research Program (SURP)
https://as.nyu.edu/biology/outreach/surp.html
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Arbel Harpak
Amy Feldman
8 months ago
If you’ve been directly impacted by a pause or cancellation of an NIH study session, we
@forbes.com
would like to talk to you
add a skeleton here at some point
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Arbel Harpak
Matt Ming
8 months ago
I am excited to share the first first-author paper of my PhD describing work with Changde Cheng, Mark Kirkpatrick and
@arbelharpak.bsky.social
has been published at AJHG! We ask if sex-differential gene expression drives sex-differential selection in humans. (1/14)
www.cell.com/ajhg/fulltex...
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No evidence for sex-differential transcriptomes driving genome-wide sex-differential natural selection
We assess the evidence for a genome-wide relationship between sex differences in gene expression and sex differences in natural selection. We develop an improved model for testing this association but...
https://www.cell.com/ajhg/fulltext/S0002-9297(24)00458-0
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Arbel Harpak
April Wei
10 months ago
My lab (
aprilweilab.github.io
) continues to develop GRG and ARG related methods & more. We are looking for a postdoc to join us.
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Wei Lab
Web site created using create-react-app
https://aprilweilab.github.io
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Arbel Harpak
Micah G. Allen
10 months ago
Would you like to see
@biorxivpreprint.bsky.social
add a share to blue sky button?! I know I would! Share this post to let
@richardsever.bsky.social
@erictopol.bsky.social
and others at bioarxiv know!
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Arbel Harpak
Claus Wilke
11 months ago
Three open-rank positions at UT Austin: Cluster in Advances in Artificial Intelligence and Data Science for Environmental Systems Apply here:
apply.interfolio.com/158908
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Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
https://apply.interfolio.com/158908
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Arbel Harpak
Nikhil Milind
11 months ago
For many traits there is a correlation between the number of duplications or loss-of-function (LoF) mutations someone carries, and their phenotype. Curiously, for most traits, these effects are aligned in the SAME direction. Why?
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Arbel Harpak
Kevin Bird
almost 2 years ago
Thread of some really great works out this week in the world of countering naive genetic thinking (e.g. hereditarianism, genetic determinism, scientific racism)
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Arbel Harpak
John Benning
almost 2 years ago
Clark, PNAS 2023 (C23) argued that people’s social status is largely determined by genetic variation. Here, we show these claims are unsubstantiated & that C23 tells us nothing about the contribution of genetics to status
@jedidiahcarlson.com
@arbelharpak.bsky.social
www.biorxiv.org/content/10.1...
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Clark (2023) and the Persistence of Hereditarian Fallacies
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
https://www.biorxiv.org/content/10.1101/2023.11.01.565061v1
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