Arbel Harpak
@arbelharpak.bsky.social
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Evolutionary, statistical and population genetics at UT Austin.
http://www.harpaklab.com
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Arbel Harpak
Nandita Garud
2 days ago
I am seeking a postdoc to join my group at UCLA -- ideally the candidate would have some experience in either population genetics or microbes/microbiome (computational background needed). We have a range of projects and are happy to tailer to your interests. Please dm/email me if interested.
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Jeffrey Ross-Ibarra
5 days ago
Fun news!
@gcbias.bsky.social
and I are teaching a 2-week online population genetics workshop this summer to raise money for the Center for Population Biology at UC Davis. We're trying to gauge interest -- please fill this out if you might be interested! And please share broadly!
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Davis Summer Population Genomics Program
Want to learn population genetics? Please fill out this form to indicate your potential interest in a 2-week intensive online summer population genetics course taught by Jeffrey Ross-Ibarra and Graham...
https://docs.google.com/forms/d/1PqXEKkW_0HXbdge1yXKGXFIf7NDjH72jTfIaEZThHhA/edit
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Aaron Quinlan (he/him)
10 days ago
Reminder that the abstract deadline for the Biology of Genomes meeting at CSHL is on Feb 13! We have a fantastic lineup of keynote speakers (Janet Kelso and Jonathan Pritchard) and session chairs. Submit your best science to this exciting and engaged meeting!
meetings.cshl.edu/meetings.asp...
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The Biology of Genomes
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
https://meetings.cshl.edu/meetings.aspx?meet=GENOME
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Arbel Harpak
Daniel Bolnick
9 days ago
New preprint from our big collaborative evolution experiment in 9 whole lakes in Alaska, written by McGill grad student
@lucaseckert.bsky.social
www.biorxiv.org/content/10.6...
What happens if you put a mixture of multiple source populations together to complete & evolve in multiple new lakes?
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Arbel Harpak
Jeffrey Ross-Ibarra
23 days ago
PEQG! My favorite conference ever*. Single session, fantastic talks, great discussions. Only once every 2 years. And in the best conference location too! Abstract deadline coming up Feb 5! *Disclosure: I am required to say it's the best conference because it is and I told my mom I wouldn't lie.
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Homepage - 2026 Population, Evolutionary, and Quantitative Genetics Conference
Visit our website to learn more.
https://genetics-gsa.org/peqg-2026/
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Arbel Harpak
Joyce Wang
19 days ago
Our work on the generalizability of polygenic scores (PGS) from the
@arbelharpak.bsky.social
Lab is now officially out! We examine the accuracy of PGS predictions at the individual level. We make 3 observations that expose gaps in our understanding of PGS “portability.”
rdcu.be/e0LAr
(1/27)
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Three open questions in polygenic score portability
Nature Communications - Genetic predictors of health outcomes often drop in accuracy when applied to people dissimilar to participants of large genetic studies. Here, the authors investigate the...
https://rdcu.be/e0LAr
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Arbel Harpak
Jared M. Cole
about 1 month ago
Excited to share our new preprint from the
@arbelharpak.bsky.social
Lab! How do recruitment into genetic studies and study characteristics impact what we infer about the genetic bases of traits, and what are the consequences? (1/21)
www.biorxiv.org/content/10.6...
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Representation in genetic studies affects inference about genetic architecture
Knowledge of a trait's "genetic architecture," namely the joint distribution of allele frequencies of causal variants and the direction and magnitude of their effects, is essential to understanding it...
https://www.biorxiv.org/content/10.64898/2026.01.12.699135v1
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Arbel Harpak
Heng Li
about 1 month ago
I am looking for a postdoc to develop high-performance algorithms in computational genomics. Email or DM me if interested. For more information, see
hlilab.github.io/vacancies
. RTs appreciated!
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HLi Lab - Vacancies
Openings
https://hlilab.github.io/vacancies
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Arbel Harpak
Matt Ming
about 1 month ago
I’m very excited to share our new preprint with
@arbelharpak.bsky.social
! We meta-analyze male-female allele frequency divergences across studies (gnomAD, UKB, AoU) and ask what drives the observed differences. (1/12)
www.biorxiv.org/content/10.6...
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Arbel Harpak
Sasha Gusev
2 months ago
I wrote about the bizarre case of Herasight, the embryo selection company going all in on eugenics.
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Embryo selection company Herasight goes all in on eugenics
...
https://open.substack.com/pub/theinfinitesimal/p/embryo-selection-company-herasight?utm_campaign=post-expanded-share&utm_medium=web
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C. Brandon Ogbunu
3 months ago
"What James Watson got wrong about DNA" By the great Sohini Ramachandran (
@sramach.bsky.social
) and your boy for The Boston Globe (
@bostonglobe.com
).
www.bostonglobe.com/2025/11/14/o...
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What James Watson got wrong about DNA - The Boston Globe
The science he helped pioneer consistently undermines his view that genes determine everything about us.
https://www.bostonglobe.com/2025/11/14/opinion/james-watson-dna-research/?event=event12
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Arbel Harpak
Claus Wilke
3 months ago
My department at UT Austin is looking to hire an Assistant Professor in Evolutionary Biology, broadly defined. Feel free to reach out to me with any questions you may have.
apply.interfolio.com/177547
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https://apply.interfolio.com/177547
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Arbel Harpak
Molly Przeworski
3 months ago
An empirical approach to evaluating the prevalence of long-lived balancing selection in humans--and important limitations. Work by
@hannahmm.bsky.social
add a skeleton here at some point
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@jbenning.bsky.social
@jedidiahcarlson.com
et al. exemplify how confounding can lead to flawed inference on genetic causality. In studies of human behavior and social outcomes, the cost of downplaying this problem can be steep.
royalsocietypublishing.org/doi/epdf/10....
bsky.app/profile/jben...
add a skeleton here at some point
3 months ago
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Arbel Harpak
Yuval Simons
4 months ago
Why do complex traits differ in their genetic architecture? In our new PLOS Biology paper, we will try to convince you that two simple scaling laws drive differences in the number, effect sizes and frequencies of causal variants affecting complex traits. Thread:
journals.plos.org/plosbiology/...
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Simple scaling laws control the genetic architectures of human complex traits
Genome-wide association studies have revealed that the genetic architectures of complex traits vary widely. This study shows that differences in architectures of highly polygenic traits arise mainly f...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003402
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If you are at
#ASHG2025
and would like to chat in person, please reach out! My lab is looking for curious scientists to join us, especially (but not limited to) postdoctoral researchers.
4 months ago
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Arbel Harpak
Ana Ignatieva
4 months ago
Delighted that our paper about the distribution of genomic spans of clades/edges in genealogies (ARGs), and using this for detecting inversions and other SVs (and other phenomena that cause local disruption of recombination) is out in MBE
academic.oup.com/mbe/article/...
(1/n)
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The Length of Haplotype Blocks and Signals of Structural Variation in Reconstructed Genealogies
Abstract. Recent breakthroughs have enabled the accurate inference of large-scale genealogies. Through modelling the impact of recombination on the correla
https://academic.oup.com/mbe/article/42/9/msaf190/8223473
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Arbel Harpak
Roshni Patel
6 months ago
Bittersweet to be leaving
@docedge.bsky.social
after a wonderful postdoc, but excited to share that I'm joining
@uoregon.bsky.social
next month as an Assistant Professor in the Department of Data Science.
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Arbel Harpak
6 months ago
1/13 In a new preprint, we (with
@xliaoyi.bsky.social
‬ in the ‪@arbelharpak.bsky.social‬ lab) find that expression from the “inactivated” X (Xi) is consequential for both female-male differences in gene expression and variation among females in disease and physiology:
www.biorxiv.org/content/10.1...
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Escape from X inactivation drives sex differences and female trait variation
X chromosome inactivation (XCI) partially balances gene dosage between sexes, yet expression from the inactive X (Xi) is variable across genes. In this study, we investigate whether gene-level Xi expr...
https://www.biorxiv.org/content/10.1101/2025.08.01.668097v1
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Arbel Harpak
Integrative Biology - UT Austin
6 months ago
Applications for the 2026 Stengl-Wyer Scholars Program are open! The program provides up to 3 years of support for talented postdoctoral researchers in the broad area of the diversity of life and/or organisms in their natural environments. Learn more here:
utexas.infoready4.com/CompetitionS...
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Arbel Harpak
Molly Przeworski
10 months ago
Amidst all the terrible and terrifying news, so lovely to hear of
@jkpritch.bsky.social
's election to the National Academy of Sciences. Congratulations!
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Arbel Harpak
Roshni Patel
10 months ago
a quick note on my paper with
@jeffspence.bsky.social
and
@jkpritch.bsky.social
on conditional frequency spectra, now out in a
@genetics-gsa.bsky.social
special issue:
doi.org/10.1093/genetics/iyae210
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Characterizing selection on complex traits through conditional frequency spectra
Abstract. Natural selection on complex traits is difficult to study in part due to the ascertainment inherent to genome-wide association studies (GWAS). Th
https://doi.org/10.1093/genetics/iyae210
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Arbel Harpak
Sasha Gusev
11 months ago
More recently, Smith et al. (
biorxiv.org/content/10.1...
) proposed an estimator of polygenic score confounding that can be directly attributable to stratification/ancestry. They show that it is present in target data from Europe, other continents, even ancient DNA!
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Arbel Harpak
Sasha Gusev
11 months ago
I wrote about how population stratification in genetic analyses led to a decade of false findings and almost certainly continues to bias emerging results. But we are starting to have statistical tools to sniff it out. A đź§µ:
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How population stratification led to a decade of sensationally false genetic findings
Stratification makes environments look like genes
https://open.substack.com/pub/theinfinitesimal/p/how-population-stratification-led?r=43f9ax&utm_campaign=post&utm_medium=web&showWelcomeOnShare=true
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Arbel Harpak
Judd Legum
about 1 year ago
BREAKING The Trump administration is maintaining a funding freeze at the National Institutes of Health (NIH) in defiance of two federal court orders. The ongoing freeze was confirmed by an NIH official and internal correspondence reviewed by Popular Information.
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Trump maintains funding freeze at NIH, defying court order
The Trump administration is still prohibiting National Institutes of Health (NIH) staff from issuing virtually all grant funding, an NIH official tells Popular Information.
https://popular.info/p/trump-maintains-funding-freeze-at
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Arbel Harpak
C. Brandon Ogbunu
about 1 year ago
"One thing is certain: The changes we make ourselves will be healthier than the ones our adversaries demand." New work for
@undark.org
:
undark.org/2025/02/06/o...
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The End of Science’s Peacetime
Opinion | Defending the practice of science from its adversaries will require dealing with some uncomfortable truths.
https://undark.org/2025/02/06/opinion-end-of-science-peacetime/
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Arbel Harpak
Samuel Pattillo Smith
about 1 year ago
Think of a polygenic score you care about. Are direct genetic effects driving variation among people in this predictor? Or perhaps other, confounding factors? We at the
@arbelharpak.bsky.social
&
@docedge.bsky.social
Labs developed a method to tackle this question. [1/n]
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A Litmus Test for Confounding in Polygenic Scores
Polygenic scores (PGSs) are being rapidly adopted for trait prediction in the clinic and beyond. PGSs are often thought of as capturing the direct genetic effect of one's genotype on their phenotype. ...
https://www.biorxiv.org/content/10.1101/2025.02.01.635985v1
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Arbel Harpak
Molly Przeworski
about 1 year ago
“The distribution of highly deleterious variants across human ancestry groups”. Preprint with Anastasia Stolyarova and
@gcbias.bsky.social
:
www.biorxiv.org/content/10.1...
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The distribution of highly deleterious variants across human ancestry groups
A major focus of human genetics is to map severe disease mutations. Increasingly that goal is understood as requiring huge numbers of people to be sequenced from every broadly-defined genetic ancestry...
https://www.biorxiv.org/content/10.1101/2025.01.31.635988v1
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Arbel Harpak
Matt Rockman
about 1 year ago
Undergrads: apply to NYU's Summer Undergraduate Research Program in Biology! 10 weeks of research in a structured setting, featuring terrific mentors, exciting biology, housing in New York, and a stipend.
as.nyu.edu/biology/outr...
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Simons Foundation-NYU Biology Summer Undergraduate Research Program (SURP)
https://as.nyu.edu/biology/outreach/surp.html
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Arbel Harpak
Amy Feldman
about 1 year ago
If you’ve been directly impacted by a pause or cancellation of an NIH study session, we
@forbes.com
would like to talk to you
add a skeleton here at some point
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Arbel Harpak
Matt Ming
about 1 year ago
I am excited to share the first first-author paper of my PhD describing work with Changde Cheng, Mark Kirkpatrick and
@arbelharpak.bsky.social
has been published at AJHG! We ask if sex-differential gene expression drives sex-differential selection in humans. (1/14)
www.cell.com/ajhg/fulltex...
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No evidence for sex-differential transcriptomes driving genome-wide sex-differential natural selection
We assess the evidence for a genome-wide relationship between sex differences in gene expression and sex differences in natural selection. We develop an improved model for testing this association but...
https://www.cell.com/ajhg/fulltext/S0002-9297(24)00458-0
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Arbel Harpak
April Wei
about 1 year ago
My lab (
aprilweilab.github.io
) continues to develop GRG and ARG related methods & more. We are looking for a postdoc to join us.
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Wei Lab
Web site created using create-react-app
https://aprilweilab.github.io
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Arbel Harpak
Micah G. Allen
about 1 year ago
Would you like to see
@biorxivpreprint.bsky.social
add a share to blue sky button?! I know I would! Share this post to let
@richardsever.bsky.social
@erictopol.bsky.social
and others at bioarxiv know!
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Arbel Harpak
Claus Wilke
over 1 year ago
Three open-rank positions at UT Austin: Cluster in Advances in Artificial Intelligence and Data Science for Environmental Systems Apply here:
apply.interfolio.com/158908
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https://apply.interfolio.com/158908
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Arbel Harpak
Nikhil Milind
over 1 year ago
For many traits there is a correlation between the number of duplications or loss-of-function (LoF) mutations someone carries, and their phenotype. Curiously, for most traits, these effects are aligned in the SAME direction. Why?
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Arbel Harpak
Kevin Bird
over 2 years ago
Thread of some really great works out this week in the world of countering naive genetic thinking (e.g. hereditarianism, genetic determinism, scientific racism)
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Arbel Harpak
John Benning
over 2 years ago
Clark, PNAS 2023 (C23) argued that people’s social status is largely determined by genetic variation. Here, we show these claims are unsubstantiated & that C23 tells us nothing about the contribution of genetics to status
@jedidiahcarlson.com
@arbelharpak.bsky.social
www.biorxiv.org/content/10.1...
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Clark (2023) and the Persistence of Hereditarian Fallacies
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
https://www.biorxiv.org/content/10.1101/2023.11.01.565061v1
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