Florian Fournes
@flofournes.bsky.social
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Bacterial Genomes Adaptation_ CBI-Université de Toulouse 🇨🇵
reposted by
Florian Fournes
Justine Collier
about 1 month ago
🤩 Exciting Summer! 🤩 Two of my former postdocs in Switzerland🇨🇭 obtained Lecturer positions (Maîtres de Conférences) in French universities 🇨🇵 : congrats to Antonio Frandi and Florian Fournès !!!! 👏 La relève est assurée! All the best to both of you for this new start. 🤩
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Stephan Gruber
about 1 month ago
Our Wadjet-II paper by
@roisnehamelinf.bsky.social
is out in polished form:
www.cell.com/structure/fu...
With a great preview by
@kevincorbett.bsky.social
&
@amardeeep.bsky.social
highlighting the potential of Wadjets: Wadjet—Keeping a watchful eye on circular DNA.
www.cell.com/structure/fu...
add a skeleton here at some point
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Ethan Garner
5 months ago
I’m excited that the work by Diego Ramirez and Lei Yin is out, where they gained several key insights into what provides the force underlying bacterial cell division
doi.org/10.1101/2025...
. To divide, cells must first bend the membrane inward, a process that’s energetically expensive
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The interplay of membrane tension and FtsZ filament condensation on the initiation and progression of cell division in B. subtilis
The first step of cell division is deforming the planar cell membrane inward towards the cytoplasm. As deforming membranes is energetically costly, biology has developed various protein systems to acc...
https://doi.org/10.1101/2025.05.18.654715
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Wiep Klaas Smits (ExpBac/CMAT)
about 2 months ago
The Escherichia coli replication initiator DnaA is titrated on the chromosome
www.nature.com/articles/s41...
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The Escherichia coli replication initiator DnaA is titrated on the chromosome - Nature Communications
A DNA-binding protein, DnaA, regulates the initiation of chromosomal replication in bacteria. Here, Olivi et al. show that the bacterial chromosome sequesters DnaA in a growth rate-dependent manner, s...
https://www.nature.com/articles/s41467-025-63147-1
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Didier Mazel
about 2 months ago
For those who love bacterial replicons, The ultimate review, from our lab, signed by the master of their evolution. @val-meve.bsky.social
www.sciencedirect.com/science/arti...
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Taming wild replicons: evolution and domestication of large extrachromosomal replicons
Bacterial genomes often contain extrachromosomal replicons (ERs), ranging from small, mobile plasmids to large, stably inherited elements, such as meg…
https://www.sciencedirect.com/science/article/pii/S1369527425000797
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Javier Santoyo
about 2 months ago
Giant extrachromosomal element “Inocle” potentially expands the adaptive capacity of the human oral microbiome.
#BacterialExtrachromosomalElements
#OralMicrobiome
@natcomms.nature.com
🧬
www.nature.com/articles/s41...
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Shraddha Shitut
7 months ago
Excited to share our paper published in
@currentbiology.bsky.social
that explores the consequences of having multiple genomes in a bacterial model system and it’s benefits in a multidrug environment !
www.cell.com/current-biol...
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reposted by
Florian Fournes
2 months ago
Excited to share another study from my lab @fordhamchem now out
@narjournal.bsky.social
:
doi.org/10.1093/nar/...
. Most bacterial DNA polymerases must interact with the sliding clamp DnaN for their function, but we show that it’s more complicated in B. subtilis DNA replication. (1/4)
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The B. subtilis replicative polymerases bind the sliding clamp with different strengths to tune their activity in DNA replication
Abstract. Ring-shaped sliding clamp proteins are essential components of the replication machinery across all domains of life. DNA polymerases bind the cla
https://doi.org/10.1093/nar/gkaf721
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One of the best places to conduct scientific research with a wonderfull project and a great PI!!
add a skeleton here at some point
2 months ago
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Daniela Barillà
3 months ago
And the story is published now!🍾
www.nature.com/articles/s41...
Open access link:
rdcu.be/exnOc
Many years in the making, great collaboration with
@archaellum.bsky.social
&
@tunglejic.bsky.social
Thanks
@ukri.org
BBSRC &
@leverhulme.ac.uk
for funding, reviewers & editor!! 🙏
#microsky
#archaeasky
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Jesse Shapiro
3 months ago
One of my favourite serendipitous results from the lab came about because we were long-read sequencing bacterial: Vibrio cholerae, which is "supposed to" have TWO circular chromosomes (3 + 1 million base pairs) often has just ONE fused chromosome (4 Mbp).
www.nature.com/articles/s41...
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Prevalent chromosome fusion in Vibrio cholerae O1 - Nature Communications
The pathogenic bacterium Vibrio cholerae typically has two circular chromosomes. Here, Cuénod et al. analyse 467 clinical isolates and identify several independent chromosome fusion events that are li...
https://www.nature.com/articles/s41467-025-60699-0
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Matthew Cobb
3 months ago
Just learned that Frank Stahl (of the Meselson and Stahl DNA replication experiment ("the most beautiful experiment in biology") died at the beginning of April, to no fanfare. Here's a lovely video of them reminiscing:
www.youtube.com/watch?v=7-tn...
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The Most Beautiful Experiment: Meselson and Stahl
YouTube video by Science Communication Lab
https://www.youtube.com/watch?v=7-tnuAqEp9g
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Pierre Dupuy
4 months ago
After a PhD and two postdocs, I’m very proud to be joining the CNRS as a Chargé de recherche, this is a meaningful milestone. Huge thanks to Claude Bruand,
@michaelglickman.bsky.social
, and
@oneyrolles.bsky.social
for their guidance and support. Olivier, let’s turn this into exciting discoveries!
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Jan-Willem Veening
4 months ago
New tenure track assistant professor position in molecular microbiology in our department
@dmf-unil.bsky.social
@unil.bsky.social
! We are casting a wide net for an experimental molecular microbiologist. Apply here:
wwwfbm.unil.ch/releve/appli...
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DMF: Tenure Track Assistant Professor towards Associate Professor in Molecular Microbiology - Site des postulations FBM
https://wwwfbm.unil.ch/releve/application/announce/show/133
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Céline Loot
5 months ago
www.pasteur.fr/fr/journal-r...
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Les bactéries utilisent les mêmes outils pour résister aux antibiotiques et aux virus
La résistance des bactéries aux antibiotiques est un phénomène qui s’accentue, créant un problème de santé publique majeur. Parmi les possibles alternatives aux antibiotiques, l’utilisation de virus i...
https://www.pasteur.fr/fr/journal-recherche/actualites/bacteries-utilisent-memes-outils-resister-aux-antibiotiques-aux-virus
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Zeynep Baharoglu
5 months ago
Marie Curie fellowship, post-doc hosting oppotunity in my lab. MSCA Post-doctoral Fellowship at IBPC Paris on RNA modifications in bacteria (FRANCE) 🦠💫
euraxess.ec.europa.eu/jobs/hosting...
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https://euraxess.ec.europa.eu/jobs/hosting/msca-post-doctoral-fellowship-ibpc-paris-rna-modifications-bacteria-france
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Céline Loot
5 months ago
At least 10% of the V. cholerae integron cassettes have novel antiphage activities (see below). Considering that there are 25,000 distinct cassettes of unknown function, integrons constitute an extraordinary and almost inexhaustible reservoir of antiphage functions!
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Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems
Integrons are genetic systems that drive bacterial adaptation by acquiring, expressing, and shuffling gene cassettes. While mobile integrons are well known for spreading antibiotic resistance genes, t...
https://www.science.org/doi/10.1126/science.ads0768
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Baptiste Darracq
5 months ago
White smoke, we have a new pope and also 16 new anti-phages systems in sedentary integrons (SCIs) ! In collaboration with the Rocha lab, we show in our new paper that cassettes of these large platforms encode many known anti-phage defenses, and uncovered 16 new ones.
www.science.org/doi/10.1126/...
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Sedentary chromosomal integrons as biobanks of bacterial antiphage defense systems
Integrons are genetic systems that drive bacterial adaptation by acquiring, expressing, and shuffling gene cassettes. While mobile integrons are well known for spreading antibiotic resistance genes, t...
https://www.science.org/doi/10.1126/science.ads0768
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Ákos T Kovács
5 months ago
Biofilm architecture determines the dissemination of conjugative plasmids
#PNAS
from
@sbigot.bsky.social
,
@knutdrescher.bsky.social
labs
www.pnas.org/doi/10.1073/...
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Biofilm architecture determines the dissemination of conjugative plasmids | PNAS
Plasmid conjugation is a contact-dependent horizontal gene transfer mechanism that significantly contributes to the dissemination of antibiotic res...
https://www.pnas.org/doi/10.1073/pnas.2417452122
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Nathan Fraikin
6 months ago
Our set of new prokaryote-optimized fluorescent proteins is now published !
#microbiology
#microsky
#microscopy
🧫🦠🔬
www.science.org/doi/10.1126/...
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A palette of bright and photostable monomeric fluorescent proteins for bacterial time-lapse imaging
Bright and photostable monomeric fluorescent proteins enable long-term time-lapse imaging in E. coli.
https://www.science.org/doi/10.1126/sciadv.ads6201
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Jan-Willem Veening
6 months ago
Now online
@narjournal.bsky.social
academic.oup.com/nar/article/...
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MV Mazzuoli
6 months ago
OUT NOW! 👇🏼We built a make-or-break Prime editing tool—have a read to discover how it’s changing the way we do genomic engineering.
www.nature.com/articles/s41...
@JWVeening @AxelJans & all others authors! 👏🏻
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Zeynep Baharoglu
7 months ago
Cytosine methylation by ScmA contributes to the fitness of Caulobacter crescentus cells naturally expressing a Vsr-like protein
www.biorxiv.org/content/10.1...
Another orphan cytosine methyltransferase in bacteria
#microsky
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Cytosine methylation by ScmA contributes to the fitness of Caulobacter crescentus cells naturally expressing a Vsr-like protein
While methylated cytosines are known to play important roles in eukaryotes, their significance in bacteria remains poorly understood especially when they are added on genomes by DNA methyltransferases...
https://www.biorxiv.org/content/10.1101/2025.03.21.644545v1?ct=ct
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Stephan Gruber
7 months ago
Happy to share the beautiful structure of a Wadjet SMC complex by
@roisnehamelinf.bsky.social
, with support from the DCI and
@drhonsworth.bsky.social
! This is a type II Wadjet with unique characteristics including a tandem KITE subunit, distinct coiled coil architecture and a deviant hinge.
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bioRxiv Microbiology
7 months ago
Linear dicentric chromosomes in bacterial natural isolates reveal common constraints for replicon fusion
https://www.biorxiv.org/content/10.1101/2025.02.23.639760v1
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Noémie Matthey
11 months ago
It's really nice to see the huge flow of new people coming here! Maybe it's time for a quick presentation. Hi 👋 I'm Noémie, I love science 🧬 and especially microbes 🔬 I do scientific illustrations for paper, cover or logo. And I'm the illustrator behind the Bacterial World blog:
sarahs-world.blog
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Pedro Dorado-Morales
9 months ago
Interested in the plasmidverse? Then, don't think twice and join the International Society for Plasmid Biology Virtual Seminars Series. 👇
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"The pathway to resolve dimeric forms distinguishes plasmids from megaplasmids in Enterobacteriaceae | Nucleic Acids Research | Oxford Academic"
academic.oup.com/nar/article/...
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The pathway to resolve dimeric forms distinguishes plasmids from megaplasmids in Enterobacteriaceae
Abstract. Bacterial genomes contain a plethora of secondary replicons of divergent size. Circular replicons must carry a system for resolving dimeric forms
https://academic.oup.com/nar/article/53/2/gkae1300/7951707?searchresult=1
9 months ago
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Marie-Eve VAL
9 months ago
1/ 🔬 Our work, "Dynamic transitions of initiator binding coordinate the replication of the two chromosomes in Vibrio cholerae", is now published in Nature Communications. Here's a thread on how we think Chr1 and Chr2 replication is coordinated in Vibrio. 🧵 Link :
www.nature.com/articles/s41...
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Michael
10 months ago
Very happy to see our study "printed"
www.science.org/doi/10.1126/...
. We report how mechanics are related with DNA recombination efficiency. Great work by Kate
@cmcb-tud.bsky.social
@tudresden.bsky.social
in collab with
@celineloot.bsky.social
and
@amazeld.bsky.social
@pasteur.fr
. Synopsis 👇1/4
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