@NicoliLab
@nicolilab.bsky.social
📤 694
📥 52
📝 23
RNA, Cell Biology, Zebrafish, Development Lovers
pinned post!
So excited to announce lab alumni Dr. Helen Mengze He and Liana Boraas work at
@yalecvrc.bsky.social
in collaboration with the Kaelyn Sumigray lab
@yaleschoolofmed.bsky.social
is published today in
@natcomms.nature.com
and highlighted in Yale News!
medicine.yale.edu/news-article...
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Unlocking the Skin’s Natural Healing Power
Researchers show that embryonic skin stem cells rely on a specialized mechanism to resist injury. The findings could lead to new strategies for repairing wounds
https://medicine.yale.edu/news-article/unlocking-skins-natural-healing-power/
about 1 month ago
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22
8
reposted by
@NicoliLab
Nature
4 days ago
Nature research paper: Secretome translation shaped by lysosomes and lunapark-marked ER junctions
go.nature.com/3Ju4a33
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Secretome translation shaped by lysosomes and lunapark-marked ER junctions - Nature
Live-cell imaging of mRNA encoding secretome proteins and translated nascent peptide markers show that secretome translation occurs at endoplasmic reticulum junctions near lysosomes, requires lunapark protein and is modulated by nutrient status.
https://go.nature.com/3Ju4a33
0
9
1
reposted by
@NicoliLab
Ruslan Rust
5 days ago
Great work 👏 mapping how brain endothelial cells communicate with astrocyte endfeet at the blood–brain barrier in
@natureportfolio.nature.com
The study identifies ligand–receptor pairs conserved in humans and altered in MS and Alzheimer’s. Makes me also wonder how many could be druggable targets.
1
12
5
reposted by
@NicoliLab
Ben Goult
11 days ago
Vinculin is a simple adapter protein right? Wrong! That’s been the prevailing view for the 46 years since it was discovered. Here we provide a new paradigm and show that vinculin is a complex mechanosensor itself, containing 6 binary switch domains.
www.science.org/doi/10.1126/...
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The mechanical response of vinculin
Vinculin buffers force via dynamic domain unfolding/refolding under physiological load and lacks a stable head-tail lock.
https://www.science.org/doi/10.1126/sciadv.ady6949
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Happy Halloween from the Addams Family (Nicoli lab version) 👻👻👻
@yalecvrc.bsky.social
11 days ago
0
15
2
Amazing work, congratulations! This is a brilliant step forward in establishing condensates as functional post-transcriptional mechanisms outside germ cells! 👏🏼👏🏼
add a skeleton here at some point
13 days ago
0
6
1
reposted by
@NicoliLab
Nature
13 days ago
Ozempic, MRI machines and flat screen televisions all emerged out of fundamental research decades earlier — the very types of study being slashed by the US government
www.nature.com/articles/d41...
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7 basic science discoveries that changed the world
Ozempic, MRI machines and flat screen televisions all emerged out of fundamental research decades earlier — the very types of study being slashed by the US government.
https://www.nature.com/articles/d41586-025-03474-x
0
149
78
reposted by
@NicoliLab
Cell Reports
13 days ago
Long noncoding RNA-dependent control of Myc transcriptional bursting
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Long noncoding RNA-dependent control of Myc transcriptional bursting
Li et al. show that the chromatin-associated long noncoding RNA Pvt1 is a negative regulator of Myc transcription by increasing local RNA concentration and limiting bursting from the Myc promoter. This mechanism serves to restrain Myc levels and restrict its proliferative and oncogenic activities.
http://dlvr.it/TNxsnl
0
3
2
reposted by
@NicoliLab
Stylianos Lefkopoulos (he/him)
28 days ago
Not the submission process, not reviewer #2, not the editor. Writing the abstract of the paper is often a far greater challenge. And there’s one simple reason for that: most people have a hard time figuring out what’s important for the reader. I ‘ll be sharing tips in next posts - stay tuned!
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38
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reposted by
@NicoliLab
RNA Society
18 days ago
We are delighted to announce our next RNA Society Member Spotlight!
www.rnasociety.org/dr--lin-huang
Dr. Lin Huang leads a research group at Sun Yat-Sen Memorial Hospital and Sun Yat-Sen University in China.
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4
1
reposted by
@NicoliLab
Beck Richardson
29 days ago
Our new paper on valve disease in aged
#zebrafish
is out!
onlinelibrary.wiley.com/doi/10.1111/...
This has been a long running collaborative effort with contributions from lots of great people!
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Aged Zebrafish as a Spontaneous Model of Cardiac Valvular Disease
Natural ageing in zebrafish results in spontaneous development of valvular degeneration in both the atrioventricular (AV) and bulboventricular (BV) valves. Aged zebrafish valves are larger and exhibi...
https://onlinelibrary.wiley.com/doi/10.1111/acel.70266
0
21
11
reposted by
@NicoliLab
Needhi Bhalla 💅🏽
19 days ago
@joann-trejo.bsky.social
,
@marymunson4.bsky.social
and I have a commentary in
@natcellbio.nature.com
on recent attacks on DEI in biomedical research: "If scientific research, especially biomedical research, is meant to serve everyone, then it requires that everyone has an opportunity to participate"
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Scaling back DEI programmes and the loss of scientific talent
Nature Cell Biology - Programmes that support diversity, equity and inclusion (DEI) in science are under attack in the USA. Data indicate that diversity in the scientific workforce increases...
https://www.nature.com/articles/s41556-025-01797-5.epdf?sharing_token=oxrenJgtNXv1m6Fyx7wLzdRgN0jAjWel9jnR3ZoTv0NfzXKoMS8-Br0ZFrMN9rgIEIJjaFkZpG59wSVep7o3jdQz8jYk1gbjWJNDW3AyVlM47-nVlTMBV5v-kA2QxhP1xVuLLMTAwSEiMjRq8E_jrEpjouwIBMKn4J6SrrW2HHk%3D
6
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reposted by
@NicoliLab
Developmental Biology
19 days ago
#DBfeature
🧑🔬 David Sherwood draws a powerful parallel between morphogenesis and a scientific career, showing how becoming a biologist is a continual process of shaping, adaptation, and growth. Like development, a scientific life unfolds through adaptation and emergence.
tinyurl.com/6yd46wcx
0
28
7
reposted by
@NicoliLab
Journal of Cell Biology
20 days ago
Fazekas, Kaszás, Vámosi et al
@enyedilab.bsky.social
describe a
#fibroblast-specific
synthetic promoter that enables
#biosensor
expression & targeted ablation in
#zebrafish
fins & reveal a role for fibroblasts in osmotic surveillance by wound-induced calcium patterns
rupress.org/jcb/article/...
0
10
8
What an incredible scientific journey! Dr. Anne Eichmann, one of the giants in the field, shared her inspiring personal story at
@navbo.bsky.social
reflecting on life, experiences, and lessons learned. We’re so proud to have her as a colleague at
@yalecvrc.bsky.social
22 days ago
0
7
0
reposted by
@NicoliLab
Nature
22 days ago
Nature research paper: Niche-specific dermal macrophage loss promotes skin capillary ageing
go.nature.com/3WH5C4W
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Niche-specific dermal macrophage loss promotes skin capillary ageing - Nature
Capillary-associated macrophages are selectively lost over time, contributing to impaired vascular repair and reduced tissue perfusion in older mice.
https://go.nature.com/3WH5C4W
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Such a curious and fascinating discovery!!! 👏🏼👇🏼👏🏼👇🏼
add a skeleton here at some point
24 days ago
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Wonderful! Congratulations, everyone!👏🏼👏🏼👏🏼
add a skeleton here at some point
24 days ago
0
2
0
reposted by
@NicoliLab
Stella Hurtley
25 days ago
My choice this week in
@science.org
www.nature.com/articles/s41...
3
19
4
reposted by
@NicoliLab
26 days ago
Non-canonical cytokinesis driven by mechanical uncoupling via nematic flows and adhesion-based invagination
www.biorxiv.org/content/10.1...
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Non-canonical cytokinesis driven by mechanical uncoupling via nematic flows and adhesion-based invagination
Cleavage - the series of rapid cell divisions that follow fertilization - marks the onset of metazoan development and represents a deeply conserved evolutionary process. Across animals, two principal ...
https://www.biorxiv.org/content/10.1101/2025.10.15.682552v1
0
6
2
reposted by
@NicoliLab
Cell Reports
26 days ago
Human assembloid of human blood vessel organoids with pancreatic islets improves insulin secretion over time ex vivo
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Human assembloid of human blood vessel organoids with pancreatic islets improves insulin secretion over time ex vivo
Tubbs et al. report a human assembloid composed of self-organizing 3D blood vessel organoids with human pancreatic islets. This assembloid improved insulin secretion over time on five donors, suggesting new islet prevascularization that could potentially improve islet transplantation strategies and outcomes for type 1 diabetes patients.
http://dlvr.it/TNjf6g
0
1
1
reposted by
@NicoliLab
Journal of Cell Biology
26 days ago
Jensen,
@peiferlabunc.bsky.social
et al.
@unclineberger.bsky.social
reveal that the intrinsically disordered region of Canoe is critical for its role in linking cell–cell adherens junctions to the
#cytoskeleton
.
rupress.org/jcb/article/...
#Development
#Adhesion
#Drosophila
1
10
5
reposted by
@NicoliLab
Journal of Cell Science
28 days ago
Shu Yao Leong, Erik Schäffer
@schaefferlab.bsky.social
& team
@zmbp-tuebingen.bsky.social
discover that the tail domain of the kinesin-12 POK2 acts as a versatile interaction hub for microtubules, MAP65-3 & lipids.
journals.biologists.com/jcs/article/...
journals.biologists.com/jcs/article/...
1
8
5
reposted by
@NicoliLab
eLife
29 days ago
A cage-like network of extracellular matrix proteins anchors platelet-producing cells in the bone marrow, preventing them from entering the bloodstream too early.
buff.ly/Fz6aJvm
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0
8
3
Thrilled to see the growing interest in adhesion condensates — more discoveries on the horizon!
www.biorxiv.org/content/10.1...
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Optogenetic construction of de novo integrin-adhesion complexes reveals role for biocondensation in adhesion nucleation
Integrin-adhesion complexes (IACs) form spontaneously in cells on extracellular matrix substrates, allowing them to sense matrix composition and transduce force. However, IACs often do not form unifor...
https://www.biorxiv.org/content/10.1101/2025.10.08.681107v1
30 days ago
1
6
2
reposted by
@NicoliLab
Shicheng Guo
about 1 month ago
Zebrafish lacking rasa1a & ephb4a reveal insights into vein of Galen aneurysm, boosting understanding of neurovascular defects. PMID:40506481, Nat Cardiovasc Res 2025
https://doi.org/10.1038/s44161-025-00659-5
#Medsky
#Pharmsky
#RNA
#ASHG
#ESHG
🧪
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Reversal of cerebrovascular anomalies in a zebrafish model of vein of Galen aneurysm | Nature Cardiovascular Research
Congenital vascular malformations result from abnormal development of the vascular tree, with the aneurysmal malformation of the vein of Galen (VGAM) being the most prevalent neurovascular malformation in neonates, associated with poor outcomes. This condition is linked to germline mutations in the RASA1 and EPHB4 genes, although the underlying developmental mechanisms remain unclear. Here we generate zebrafish models lacking rasa1a and ephb4a that replicate the genetic and structural features of VGAMs. Our findings connect the development of malformations to insufficient fusion of precursor blood vessels, a process regulated by blood flow and the responses of endothelial cells. RASA1 deficiency destabilizes the homeostatic response to blood flow and contributes to impaired flow-mediated activation of MAPK and phosphatidylinositol-3-kinase signaling. By pharmacologically targeting these signaling pathways in mutant models, we restore normal fusion in existing malformations, offering po
https://doi.org/10.1038/s44161-025-00659-5
0
7
5
Super interesting finding!👏🏼
add a skeleton here at some point
30 days ago
0
4
0
reposted by
@NicoliLab
Ralf H. Adams
about 1 month ago
A recent preprint (Yang et al.,
doi.org/10.1101/2025...
) challenges an article from my lab published in 2024 (Koh et al. 2024, PMID: 39537918). We strongly dispute their claims (please see our comment on bioRXiv). 1/4
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Degeneration and Impaired Resilience of Skull Bone and Hematopoietic Bone Marrow
Bone marrow health is central to transplantations, blood formation, and cancer progression. However, the bone marrow niche deteriorates with age, impairing haematopoietic stem cell function. Contrary ...
https://doi.org/10.1101/2025.10.02.679940
1
17
9
So excited to announce lab alumni Dr. Helen Mengze He and Liana Boraas work at
@yalecvrc.bsky.social
in collaboration with the Kaelyn Sumigray lab
@yaleschoolofmed.bsky.social
is published today in
@natcomms.nature.com
and highlighted in Yale News!
medicine.yale.edu/news-article...
loading . . .
Unlocking the Skin’s Natural Healing Power
Researchers show that embryonic skin stem cells rely on a specialized mechanism to resist injury. The findings could lead to new strategies for repairing wounds
https://medicine.yale.edu/news-article/unlocking-skins-natural-healing-power/
about 1 month ago
3
22
8
OMG 😱 a true game changer for biology! Menstruation is a natural miracle of tissue regeneration. Amazing biology to come!
add a skeleton here at some point
about 1 month ago
1
15
6
reposted by
@NicoliLab
Science Magazine
about 1 month ago
Mitochondrial diseases have seemed intractable, but last month the Food and Drug Administration OK’d the first treatment targeting a mitochondrial flaw.
https://scim.ag/4q3Ymxz
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First approved drug for mitochondrial disease could pave way for more treatments
Researchers are testing multiple treatments for the rare genetic conditions
https://scim.ag/4q3Ymxz
0
49
20
reposted by
@NicoliLab
Miki Ebisuya
about 1 month ago
New preprint from the lab! We discovered a transient fluidization in the basal region of human forebrains by tracking microdroplets in cerebral organoids.This “basal fluidization”, absent in gorilla and mouse, may contribute to greater surface expansion in human forebrains 1/
doi.org/10.1101/2025...
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37
reposted by
@NicoliLab
Micha Sam Brickman Raredon
about 1 month ago
🔥Sequencing-free whole-genome spatial transcriptomics at single-molecule resolution
www.cell.com/cell/fulltex...
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Sequencing-free whole-genome spatial transcriptomics at single-molecule resolution
RAEFISH delivers whole-transcriptome (>20,000 genes) imaging at single-molecule resolution in cells and tissues and enables direct gRNA detection for high-content, image-based CRISPR screens.
https://www.cell.com/cell/fulltext/S0092-8674%2825%2901037-2
0
9
3
😍😍👏🏼👏🏼
add a skeleton here at some point
about 1 month ago
0
2
0
reposted by
@NicoliLab
Nature Portfolio
about 1 month ago
Our researcher communities have a new space just for cardiovascular researchers and clinicians. Dive into the ‘Aortic Aneurysm and Dissection Management’ hub, where you can explore new research, join the discussion and connect with peers from the field.
go.nature.com/4gPRT55
#Academicsky
0
4
1
reposted by
@NicoliLab
Mark Peifer (He, him)
about 1 month ago
Faculty positions in animal morphogenesis that may be filled at the Assistant or Associate Professor level in one of my favorite Departments" Cell and Systems Biology at the University of Toronto. 1/n
jobs.utoronto.ca/job/Toronto-...
jobs.utoronto.ca/job/Toronto-...
2
37
35
reposted by
@NicoliLab
Zebrafish Information Network (ZFIN)
about 1 month ago
[Job] PhD Position in Neuroscience, Ting-Feng Lin Lab, Utrecht University, Utrecht, Netherlands
#zebrafish
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PhD Position in Neuroscience, Ting-Feng Lin Lab, Utrecht University, Utrecht, Netherlands - Jobs - Confluence
https://zfin.atlassian.net/wiki/spaces/jobs/blog/2025/10/06/6621069332/PhD+Position+in+Neuroscience+Ting-Feng+Lin+Lab+Utrecht+University+Utrecht+Netherlands
0
2
1
reposted by
@NicoliLab
Sam Aytekin
about 1 month ago
Garcia Lab did it again! Such a fantastic read if you are interested in FAs mechanics and biology. Congratulations to
@garcialabgt.bsky.social
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Mechanochemical waves in focal adhesions during cell migration
Traction force and FAK signaling exhibit oscillatory temporal coupling in adhesive structures.
https://www.science.org/doi/10.1126/sciadv.adw6425?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
0
13
8
reposted by
@NicoliLab
Christian Mosimann
about 1 month ago
Out
@natcomms.nature.com
: our work on how the ❤️-supporting pericardium forms & acts in pediatric heart conditions.🎈🫀 Expanding our preprint & with our first HCR (thx to
@thelovelylab.bsky.social
!). Congrats all!
#devbio
#zebrafish
#CHD
@cupediatrics.bsky.social
@cudevbio.bsky.social
rdcu.be/eIJm5
add a skeleton here at some point
5
76
24
reposted by
@NicoliLab
Trends in Cell Biology
about 1 month ago
Optimality as a framework for understanding developmental robustness
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Optimality as a framework for understanding developmental robustness
Embryo growth, morphogenesis, and patterning are complex processes that coordinate between cellular dynamics, fate specification, and multiscale physical forces. Understanding how robustness in embryo development is achieved despite inherent heterogeneities in gene expression, cell properties, and tissue growth is a fundamental question. Although various feedback between gene expression, signaling, and cell and tissue mechanics have been uncovered to confer robustness on developmental systems, measuring variability and robustness from a quantitative perspective often remains challenging. Furthermore, cell fate plasticity, a key mechanism that can confer robustness, is lacking in many developing tissues. This review highlights how recent technological and conceptual advances in quantitative approaches to biology help to overcome these bottlenecks, with a particular focus on how mechanochemical feedback, or alternatively, selectively tuned control parameters, ensure developmental robustness.
http://dlvr.it/TNPPlr
0
1
1
reposted by
@NicoliLab
Nature
about 1 month ago
Nature research paper: Collective homeostasis of condensation-prone proteins via their mRNAs
go.nature.com/4pJMocs
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Collective homeostasis of condensation-prone proteins via their mRNAs - Nature
The authors discover a homeostatic process termed interstasis, in which an increased concentration of proteins within RNA–protein condensates induces the sequestration of their own mRNAs.
https://go.nature.com/4pJMocs
0
12
3
reposted by
@NicoliLab
Hao Yin
about 1 month ago
Regionalized & Sex-dependent scRNAseq of 🐭Aorta Carotid Aortic Arch Descending Thoracic Abdominal Aortic
#SmoothMuscleCell
Arch
#SecondHeartField
vs
#NeuralCrest
SMC 339 Regional SMC mRNA features ➡️ cardiovascular trait GWAS
#AortaEd
#NatCardiovascRes
2025
www.nature.com/articles/s44...
0
8
4
reposted by
@NicoliLab
Sara Wickstrom
about 1 month ago
How do
#stemcells
integrate information to coordinate fate decisions? Delighted to finally see our work showing how growth factors regulate the mechano-osmotic state of the
#nucleus
and
#chromatin
to control
#pluripotency
exit out!
www.nature.com/articles/s41...
see 🧵 👇
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Mechano-osmotic signals control chromatin state and fate transitions in pluripotent stem cells - Nature Cell Biology
McCreery, Stubb et al. show that mechano-osmotic changes in the nucleus induce general transcriptional repression and prime chromatin for cell fate transitions by relieving repression of specific differentiation genes.
https://www.nature.com/articles/s41556-025-01767-x
10
173
77
reposted by
@NicoliLab
Zebrafish Information Network (ZFIN)
about 2 months ago
[Job] Aquatics Manager, Howard Hughes Medical Institute - Janelia Research Campus, Ashburn, VA
#zebrafish
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Aquatics Manager, Howard Hughes Medical Institute - Janelia Research Campus, Ashburn, VA - Jobs - Confluence
https://zfin.atlassian.net/wiki/spaces/jobs/blog/2025/09/26/6601736201/Aquatics+Manager+Howard+Hughes+Medical+Institute+-+Janelia+Research+Campus+Ashburn+VA
0
1
1
reposted by
@NicoliLab
epithelial mechanics fan club
about 2 months ago
Tavano, S., Brückner, D. B., ... & Heisenberg, C. P. (2025). BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation. Cell Reports,
#EpithelialMechanics
doi.org/10.1016/j.ce...
0
3
1
reposted by
@NicoliLab
Stephan Huveneers
about 2 months ago
New vascular seminars coming up
@evborg.bsky.social
0
5
3
reposted by
@NicoliLab
Journal of Cell Biology
about 2 months ago
New perspective by
@maikbischoff.bsky.social
&
@mayorlab.bsky.social
about how mesenchymal cells use contact-dependent rules to generate swarm-like behaviors, patterns & organ forms.
rupress.org/jcb/article/...
#CellBio
#CellMigration
#Morphogenesis
#Development
#Science
0
10
4
reposted by
@NicoliLab
Felix Campelo
about 2 months ago
🧵 I've been meaning to write a
#Skytorial
on our recently posted prepring in which we show evidence that the Golgi 🥞 is a mechanoresponsive organelle. Extracellular mechanical forces also tune Golgi export capacity! 👉
www.biorxiv.org/content/10.1...
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Mechanical forces stimulate Golgi export
Human cells face a wide range of external mechanical stimuli that vary with cell type, state, and pathological conditions. The rapidly growing field of mechanobiology investigates how cells sense and ...
https://www.biorxiv.org/content/10.1101/2025.09.02.673725v1
2
35
13
reposted by
@NicoliLab
Life Science Editors
about 2 months ago
Great story in this issue
@nature.com
. Shows that the regulatory region controlling digit devt in vertebrates was not copy-pasted directly from fin development. So, the "fin-to-limb transition" in vertebrate evolution isn't as clear cut as originally thought.🧪👏👇 (lovely summary btw).
add a skeleton here at some point
0
5
2
reposted by
@NicoliLab
Nature
about 2 months ago
Repetitive head impacts trigger neuronal loss and disrupt blood vessels and immune cells long before the accumulation of neurotoxic tau protein
go.nature.com/4n8UwRQ
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Years of hits to the head prime the brain for decline
Repetitive head impacts trigger neuronal loss and disrupt blood vessels and immune cells long before the accumulation of neurotoxic tau protein.
https://go.nature.com/4n8UwRQ
0
32
14
reposted by
@NicoliLab
Ondine Cleaver
about 2 months ago
Biomechanics influence morphogenesis of the lung. Really cool paper by Shelby and Victor at UT Southwestern and UTD!
add a skeleton here at some point
0
8
3
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