Tuuli Lappalainen
@tuuliel.bsky.social
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Professor at KTH, NY Genome Center, SciLifeLab, working on functional genomics and human genetics.
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Tuuli Lappalainen
Aaron Quinlan (he/him)
3 days ago
Reminder that the abstract deadline for the Biology of Genomes meeting at CSHL is on Feb 13! We have a fantastic lineup of keynote speakers (Janet Kelso and Jonathan Pritchard) and session chairs. Submit your best science to this exciting and engaged meeting!
meetings.cshl.edu/meetings.asp...
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The Biology of Genomes
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
https://meetings.cshl.edu/meetings.aspx?meet=GENOME
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Robert Warmerdam
3 days ago
🧬 New preprint alert! After years of collaborative work across 52 datasets we are presenting eQTLGen phase 2: a genome-wide eQTL meta-analysis covering 43,301 blood samples:
www.medrxiv.org/content/10.6...
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Graham Coop
4 months ago
We're excited to be recruiting an NIH funded postdoc to work in the Coop lab at UC Davis. We're specifically interested in candidates who are want to work at the intersection of human genetics, GWAS, and population genetics modeling. Please RT
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Sam Gershman
1 day ago
The lesson for all the students out there is that science is a community project. Most of us make individually small contributions to this project. Success is measured at the collective level. Many of our professional (and personal) dysfunctions could be fixed by more fully embracing this view.
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John Greally
3 days ago
Please share this with your network: Postdoctoral position available in my group.
www.linkedin.com/jobs/view/43...
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Albert Einstein College of Medicine hiring Postdoctoral position studying functional non-coding variants in neurodevelopmental disorders, Bronx, New York City, USA c in New York City Metropolitan Area...
Posted 9:40:20 PM. A postdoctoral fellow position is open with 2 years of funding from the Simons Foundation Autism…See this and similar jobs on LinkedIn.
https://www.linkedin.com/jobs/view/4359896146/
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John Greally
3 days ago
Please share: we're hiring a new tenure-track faculty member to our Department of Genetics at Albert Einstein College of Medicine.
faculty-einstein.icims.com/jobs/17847/a...
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Albert Einstein College of Medicine | Medical Education | Biomedical Research
https://faculty-einstein.icims.com/jobs/17847/assistant-professor-genetics-tenure-track/job
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Chris Hayes
4 days ago
I think it's best for everyone to understand that the unified class project of billionaires right now is to do to white collar workers what globalization and neoliberalism did to blue collar workers.
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Harmit Singh Malik
6 days ago
I started offering career advice to two junior colleagues today in separate meetings, and both times I caught myself thinking that, if I'm honest, I don't have very good advice on navigating the current funding and job climate. I think it's important to say that no one does.
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Jussi Ahokas
6 days ago
Kohta paljastuu kaikille, että hyvinvointivaltio tukikin rakenteellisesti taloutta ja talouskasvua, jolloin sen romuttaminen oli onneton rakenteellinen uudistus negatiivisin pitkän aikavälin vaikutuksin. Kiitos!
#talous
#politiikka
#yhteiskunta
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Richard Sever
9 days ago
Nature and Science journalists denied entry to event featuring NIH Director
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Xuebing Wu
9 days ago
Does the noncoding genome actually carry more genetic information than coding seqs? Motivated by this question we mutated every bp in the 10kb MYC locus. Results are even more exciting: Decoding the MYC locus reveals a druggable ultraconserved RNA element
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.01.29.702547v1
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Andrew Hardaway
10 days ago
Because of technical issues with the SciENcv website, NIH is extending a period of leniency accepting old format biosketches through May 2026 (see FAQ #5):
grants.nih.gov/faqs#/common...
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Frequently Asked Questions (FAQs) | Grants & Funding
https://grants.nih.gov/faqs#/common-forms-biographical-sketch-current-pending-support.htm?anchor=57833
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Scott Horton
11 days ago
RFKJr's principal accomplishment as the nation's health guardian.
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A want new mandatory course in school curricula worldwide: Everyday logistics in urban environments. Content: How to exit the subway. How to enter the subway. How to move in stairs. How to queue.
12 days ago
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Olga Nesterova
16 days ago
WHO removing Us Flag
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Ember
18 days ago
NEW | Wind and solar generated more power than fossil fuels in the EU for the FIRST time ever. 🌪️ and ☀️ made up a RECORD 30% of 🇪🇺 electricity, up from 20% just five years ago.
https://ember-energy.org/latest-insights/european-electricity-review-2026/
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Andrew D Thaler
18 days ago
The interesting applications of AI are all, like, "we built an open framework that uses processors on recycled cell phones to identify and triangulate the location of rare bugs in tropical rainforests" while big tech is going "what if we burned down that rainforest to summarize your emails?"
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Julia Lynch
18 days ago
Lunchtime panel of faculty experts on Venezuela and oil politics in one of our larger event spaces on campus was standing room only today. Packed with students, faculty, community members. Makes me wonder why we aren’t doing teach-ins like this every week.
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Max Kozlov
19 days ago
Trump has been in office for one year. We at
@nature.com
did a deep dive looking at the administration's disruption of science in numbers. Take a look—the numbers are staggering. By me,
@dangaristo.bsky.social
, Jeff Tollefson,
@kimay.bsky.social
, & help from
@noamross.net
@scott-delaney.bsky.social
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US science after a year of Trump: what has been lost and what remains
A series of graphics reveals how the Trump administration has sought historic cuts to science and the research workforce.
https://www.nature.com/immersive/d41586-026-00088-9/index.html
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Musicology Duck
20 days ago
I just woke up from a nap and somehow while I was asleep, everyone on the bus has figured out we are not going to the right place
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Thomas Norman
19 days ago
New preprint on technologies to scale up CRISPR screens. We use them to map 665,856 pairwise genetic perturbations and outline a path to comprehensive interaction mapping in human cells. We also introduce an approach for cloning lentiviral libraries with billions of elements.
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SciLifeLab
20 days ago
SciLifeLab PULSE postdoc program focuses on innovative, fundamental, translational research. "The entrepreneurial track sparks the next generation of life-science ventures based on ground-breaking research at universities” says Kristian Sandberg. 🧪🌍 Apply today!
www.scilifelab.se/news/pulse-p...
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PULSE postdoc program advances training through academic and industry secondments
The SciLifeLab PULSE postdoc program, currently recruiting the second cohort of international talent to Swedish universities has two tracks: the academic and the entrepreneurial, industry supported…
https://buff.ly/8uni98n
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Mark Histed
21 days ago
My specific experience is with NIH, but I’ll stand up and say it: The people who work at NIH are together one of the great wonders of the world. US biomedical science, cancer cures, dementia research all are built on their talent and dedication.
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Alex Hoischen
21 days ago
1,000 PacBio genomes in a prospectively designed clinical utility study. This was the biggest and most important study that made us go live in diagnostics. Long-read genomes as a genetic first tier test across many rare diseases!
www.medrxiv.org/content/10.6...
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Clinical long-read genome sequencing for rare disease diagnostics
Background Diagnostic evaluation of rare genetic disorders continues to rely on multiple test modalities, despite the increasing use of short-read exome or genome sequencing as first-tier tests. Long-...
https://www.medrxiv.org/content/10.64898/2026.01.13.26343759v1
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Crawford Kilian
21 days ago
A long, absolutely must-read article from Cory Doctorow:
www.theguardian.com/us-news/ng-i...
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AI companies will fail. We can salvage something from the wreckage | Cory Doctorow
AI is asbestos in the walls of our tech society, stuffed there by monopolists run amok. A serious fight against it must strike at its roots
https://www.theguardian.com/us-news/ng-interactive/2026/jan/18/tech-ai-bubble-burst-reverse-centaur
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Steven Salzberg
23 days ago
very sad news. Peer Bork was one of the leaders of our field, a wonderful scientist, and he's much too young to be gone.
www.embl.org/news/embl-an...
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In remembrance of Peer Bork | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
https://www.embl.org/news/embl-announcements/in-remembrance-of-peer-bork/
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Joshua Weitz
23 days ago
Full survey results show American public have high levels of confidence in scientists while revealing some partisan differences (including on how to fund science), but statements asserting lost trust should be read instead as intentional efforts to degrade trust.
www.pewresearch.org/science/2026...
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Oded Rechavi
24 days ago
Tha'ts what scientists want too. We need AI that makes sure you don't break the dishes (or centrifuge)
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Michael Clemens
25 days ago
Just astonishing good news. We are on the way to end Multiple Sclerosis. University research delivers. Always has. Now a cabal in the White House is shattering it.
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Heng Li
25 days ago
I am looking for a postdoc to develop high-performance algorithms in computational genomics. Email or DM me if interested. For more information, see
hlilab.github.io/vacancies
. RTs appreciated!
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HLi Lab - Vacancies
Openings
https://hlilab.github.io/vacancies
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TL;DR: Indirect costs as a percentage of total costs - like the private sector tends to calculate it - for NIH grants is typically around 30-35%.
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27 days ago
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Tuuli Lappalainen
Waggoner Lab
27 days ago
Interpretable inflammation landscape of circulating immune cells
@naturemedicine.bsky.social
@fcraighero.bsky.social
@hoheyn.bsky.social
@dmaspero.bsky.social
@saguilarfer.bsky.social
@broadinstitute.org
@cnag-eu.bsky.social
www.nature.com/articles/s41...
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Tuuli Lappalainen
Nicolas Robine 🇪🇺🇫🇷🇺🇸
27 days ago
do they realize proteins come from mRNA?
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Mike Inouye
28 days ago
ICYMI in the mad rush before the winter holidays, we published a paper looking at integrated risk prediction of cardiovascular disease and modelling both targeted and population-wide intervention in the UK. I was honestly surprised at the potential benefits 👇
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Adam Ameur
28 days ago
Wow! 167.2 Gb HiFi yield from a PacBio SMRT cell🎉 Are we getting close the record? This run was for the “Genome of Sweden” project, where we're building a national reference dataset from 10 year old biobanked DNA samples🧬🧪
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Ravin Boodram - Busy Moving w/o Internets
about 1 month ago
BIG FIGHT AT POLAND’S WROCLAW ZOO!!!
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Nicolas Robine 🇪🇺🇫🇷🇺🇸
about 1 month ago
"Illumina Appoints Former NHGRI Director Eric Green as Chief Medical Officer"
www.genomeweb.com/sequencing/i...
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Illumina Appoints Former NHGRI Director Eric Green as Chief Medical Officer
Green, whose tenure as NHGRI director was terminated earlier this year, will take up his new post on Feb. 2.
https://www.genomeweb.com/sequencing/illumina-appoints-former-nhgri-director-eric-green-chief-medical-officer
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Fabian Theis
about 1 month ago
🔬 pertpy: a unified, scalable framework for single-cell perturbation analysis, now out in Nature Methods Designed for modern perturbation data - CRISPR, drug screens, patient treatments - scaling to millions of cells and 1000s of conditions. 👉
www.nature.com/articles/s41...
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Tuuli Lappalainen
The New York Times
about 1 month ago
Breaking News: Gov. Kathy Hochul, partnering with Mayor Zohran Mamdani, will unveil a plan to expand free or affordable child care for New Yorkers across the state.
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Hochul and Mamdani to Announce Road Map to Expand Child Care
Governor Kathy Hochul will appear with Mayor Zohran Mamdani to lay out a plan to expand free and subsidized child care in New York, which had been a central focus of his campaign.
https://nyti.ms/49ibffK
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Dan Landau
about 1 month ago
Happy new year/paper! A new tech (scG2P) maps genotype (DNA) to phenotype (RNA) in single cells, bringing together the worldviews of genetic & transcriptional heterogeneity. With scG2P we define how mosaicism drivers increase clonal fitness in the aging esophagus
aacrjournals.org/cancerdiscov...
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Tuuli Lappalainen
Science Magazine
about 1 month ago
The U.S. Congress has delivered another rebuke of President Donald Trump’s plans to slash this year’s budgets of several science agencies.
https://scim.ag/49G7Zwe
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Congress set to reject Trump’s major budget cuts to NSF, NASA, and energy science
Appropriators agree instead to keep this year’s spending nearly level
https://www.science.org/content/article/congress-set-reject-trump-s-major-budget-cuts-nsf-nasa-and-energy-science?utm_campaign=Science%20Magazine&utm_medium=ownedSocial&utm_source=bluesky
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Kaur Alasoo
about 1 month ago
If you like larger sample sizes, then do check out our reprocessed and fine mapped cis-eQTLs and cis-sQTLs (leafCutter and MAJIQ!) from the INTERVAL cohort (whole blood, n up to 4,729)!
zenodo.org/records/1795...
These will be on the eQTL Catalogue FTP soon as well. cc
@yosephbarash.bsky.social
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Fine mapped eQTL and sQTL summary statistics from the INTERVAL RNA-seq study (part 1)
This repository contains fine mapped eQTL and sQTL summary statistics from the INTERVAL RNA-seq study (Tokolyi et al, 2025). Datasets QTD001000-QTD001002 are based on the whole cohort of 4,729 samples...
https://zenodo.org/records/17956387
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David A Knowles
about 1 month ago
Excited to see this out
www.nature.com/articles/s41...
! Nonparametric kernel-based tests for spatially variable isoform usage in spatial transcriptomics. So many interesting examples in the CNS and cancer, we're only scratching the surface!
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Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM - Nature Biotechnology
Differential isoform usage is identified with high statistical power from spatial transcriptomics data.
https://www.nature.com/articles/s41587-025-02965-6
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Jenna Norton
about 1 month ago
The district court injunction that prevented NIH from capping indirects at 15% was upheld today on appeal!
www.reuters.com/world/trump-...
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Trump administration cannot slash NIH research funding, court rules
District Judge Angel Kelley last year blocked the cuts, and on Monday the appeals court agreed.
https://www.reuters.com/world/trump-administration-cannot-slash-nih-research-funding-court-rules-2026-01-05/
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Nikhil Milind
about 1 month ago
How well does TWAS estimate a gene’s direction of effect on a trait? We think of this as an important stress-test for the accuracy of TWAS. In a new pre-print, we find that TWAS gets the sign wrong around 20-30% of the time!
doi.org/10.64898/202...
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High false sign rates in transcriptome-wide association studies
Transcriptome-wide association studies (TWAS) are widely used to identify genes involved in complex traits and to infer the direction of gene effects on traits. However, despite their popularity, it r...
https://doi.org/10.64898/2025.12.19.695550
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medRxivpreprint
about 1 month ago
Integrating perturbational screens, eQTL, and GWAS data identifies mediating genes for complex traits
https://www.medrxiv.org/content/10.64898/2026.01.05.26343421v1
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Drop Site
about 1 month ago
🔴 Nordic nations signal support for Denmark as Trump threatens Greenland amid Venezuela regime-change push In a telephone interview with The Atlantic, US President Trump said “We do need Greenland, absolutely. We need it for defense.” He claimed Greenland’s strategic location matters for...
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Oliver Alexander
about 1 month ago
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about 1 month ago
Krugman väänsi rautalangasta jo 10v. sitten miten tämä "tuntematon jarru" toimii, mutta kukapa nyt nobelistia kuuntelisi kun voi mieluummin uskoa uusliberaaleja satuja.
www.theguardian.com/business/ng-...
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Acyn
about 1 month ago
Mamdani: For too long, those fluent in the good grammar of civility have deployed decorum to mask agendas of cruelty
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