Andrea Allegrini
@andrealle.bsky.social
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Research fellow at UCL interested in developmental psych, quant methods, statistical genetics
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Andrea Allegrini
sasha ↙︎↙︎↙︎ 🌹🏴
4 months ago
oh, this is good.
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Philosophers described by Peep Show
YouTube video by JP
https://www.youtube.com/watch?v=pHxw1yI-VSY
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Andrea Allegrini
Margherita Malanchini
4 months ago
🧠🧬🧑🤝🧑 New CoDE Lab study: Disorder-specific genetic effects drive the associations between psychopathology and cognitive functioning. Link to preprint:
www.medrxiv.org/content/10.1...
Led by the brilliant Wangjingyi Liao 🌟 A short thread summarising the study👇
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Andrea Allegrini
Margherita Malanchini
4 months ago
This work builds on our previous study, currently under review:
www.medrxiv.org/content/10.1...
A special thank you to our wonderful co-authors! Engin Keser,
@andrealle.bsky.social
,
@kailirimfeld.bsky.social
, Robert Plomin
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Isolating transdiagnostic effects reveals specific genetic profiles in psychiatric disorders
Evidence indicates a great degree of genetic overlap between psychiatric diagnoses. Accounting for these transdiagnostic effects can sharpen research on disorder-specific genetic architecture. Here we...
https://www.medrxiv.org/content/10.1101/2023.12.20.23300292v2
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Andrea Allegrini
Tabea Schoeler
5 months ago
Happy to share our new study on genetic & environmental contributors to age-related decline in ~100K UK Biobank participants! Here, we used simulation work + longitudinal GWAS and downstream analyses to explore risks involved in cognitive/physical decline (1/)🧵🧵
shorturl.at/99gqL
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Combining cross-sectional and longitudinal genomic approaches to identify determinants of cognitive and physical decline - Nature Communications
Large-scale genomic studies focusing on the genetic contribution to human aging have mostly relied on cross-sectional data. With the release of longitudinally curated aging phenotypes by the UK Bioban...
https://shorturl.at/99gqL
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Andrea Allegrini
Sasha Gusev
6 months ago
I wrote about how population stratification in genetic analyses led to a decade of false findings and almost certainly continues to bias emerging results. But we are starting to have statistical tools to sniff it out. A 🧵:
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How population stratification led to a decade of sensationally false genetic findings
Stratification makes environments look like genes
https://open.substack.com/pub/theinfinitesimal/p/how-population-stratification-led?r=43f9ax&utm_campaign=post&utm_medium=web&showWelcomeOnShare=true
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Andrea Allegrini
Abdel Abdellaoui
6 months ago
In every civilization, people end up sorted into levels of socio-economic status (SES). We explore the history, present, and future of scientific research on the complicated relationship between SES and DNA in
@naturehumbehav.bsky.social
💰🧬🎓 Link:
rdcu.be/efacK
Thread below 👇🏽
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Our work on intergenerational transmission of psychiatric risk is now out!!
www.nature.com/articles/s41...
@naturecomms.bsky.social
with thanks to my super coauthors
@leofrach.bsky.social
@jessiebaldwin.bsky.social
and several others who made this possible
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Intergenerational transmission of polygenic predisposition for neuropsychiatric traits on emotional and behavioural difficulties in childhood - Nature Communications
Parental neuropsychiatric traits relate to children’s emotions and behaviours beyond genetic transmission alone. Here the author's findings suggest potential environmental risk factors that can act on...
https://www.nature.com/articles/s41467-025-57694-w
7 months ago
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Andrea Allegrini
Margherita Malanchini
7 months ago
🧬🌳 New CoDE lab preprint: From genetic disposition to academic achievement: The mediating role of non-cognitive skills across development.
www.biorxiv.org/content/10.1...
On 🦋:
@andrealle.bsky.social
@kailirimfeld.bsky.social
@laraffington.bsky.social
A short thread 👇 (1/9)
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From genetic disposition to academic achievement: The mediating role of non-cognitive skills across development
Genetic effects on academic achievement are likely to capture environmental, developmental, and psychological processes. How these processes contribute to translating genetic dispositions into observe...
https://www.biorxiv.org/content/10.1101/2025.02.27.640510v1
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Andrea Allegrini
Louise Arseneault
8 months ago
🎆It's launch day! Check out our brand new
@wellcometrust.bsky.social
funded platform to explore over 1,600 datasets from across the world. Find the Atlas of longitudinal datasets here ->
atlaslongitudinaldatasets.ac.uk
@kingsioppn.bsky.social
@mqmentalhealth.bsky.social
#AtlasLongitudinalDatasets
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reposted by
Andrea Allegrini
Tabea Schoeler
10 months ago
Just out in
@naturehumbehav.bsky.social
! We focused on the causes & impact of self-report error in the UK Biobank. We found that reporting error does not occur at random, is not independent of other participation behaviours, and can complicate the interpretation of GWA findings
shorturl.at/N4Qc6
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The impact of self-report inaccuracy in the UK Biobank and its interplay with selective participation - Nature Human Behaviour
Biobank data are extensively used. Schoeler and colleagues show that self-report inaccuracy and selective participation are sources of poor reproducibility for biobank-scale research.
https://shorturl.at/N4Qc6
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Andrea Allegrini
Leonard Frach
10 months ago
I guess I'm a doctor now?? Huge thanks to the best lab for all the memories over the last 4 years and for the sweetest messages 🥹
@giuliapiazza.bsky.social
@emmarubyfrancis.bsky.social
@andrealle.bsky.social
@josejmorosoli.bsky.social
@jessiebaldwin.bsky.social
@kxlim.bsky.social
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Andrea Allegrini
Graham Coop
11 months ago
Just posting this to
#popgen
Here's a link to my notes on population & quantitative genetics:
github.com/cooplab/popg...
Hoping to extend it more after the winter holidays, as I'm just finishing up teaching the undergrad version of class.
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Releases · cooplab/popgen-notes
Population genetics notes. Contribute to cooplab/popgen-notes development by creating an account on GitHub.
https://github.com/cooplab/popgen-notes/releases
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reposted by
Andrea Allegrini
Gerome Breen
about 1 year ago
.
@jonicoleman.bsky.social
& I are looking for a bioinformatics/genetics PhD student in this joint MRC industry PhD scheme "Unveiling Disease-Causing DNA Repeats with Long-Read Sequencing" - a 4 year PhD funded by Oxford Nanopore & The UK MRC.
www.findaphd.com/phds/project...
#MRCDTP25
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reposted by
Andrea Allegrini
Michel Nivard
about 1 year ago
Overcomplete models, with more latent than observed variables, model complexity that traditional methods (PCA, SEM & ICA) can't uncover. A tutorial how to fit over-complete models in MCMSEM. MAny potential applications in epi, neuro, genetics & Psych🧠📊 Check it out:
rpubs.com/MichelNivard...
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reposted by
Andrea Allegrini
Michel Nivard
about 1 year ago
I pushed an update for MCMSEM. MCMSEM is an advanced extension of SEM (Developed with Zenab Tamimy and Matthijs van der Zee), which considers not just covariance but also co-skewness and co-kurtosis. It means you can test causal models!
github.com/MichelNivard...
follow examples in the thread 👇 1/?
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GitHub - MichelNivard/MCMSEM: Multi co-moment structural equation models
Multi co-moment structural equation models. Contribute to MichelNivard/MCMSEM development by creating an account on GitHub.
https://github.com/MichelNivard/MCMSEM
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reposted by
Andrea Allegrini
Sasha Gusev
over 1 year ago
How you model phenotypes really matters: "When associations between items and PGSs were not adjusted for all associations between network nodes ... PGSs were associated with a broader set of items than those identified by network analysis."
jamanetwork.com/journals/jam...
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Polygenic Scores and Networks of Psychopathology Symptoms
This cross-sectional study evaluates associations between polygenic scores with psychiatric disorder symptoms and relevant comorbid phenotypes.
https://jamanetwork.com/journals/jamapsychiatry/article-abstract/2819863
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Andrea Allegrini
Patrick Turley
over 1 year ago
Here's a pretty good summary of the state of the field for how genetic data can be applied in economics research. On top of tying much of the field together in a consistent framework, there are also a handful of novel theoretical results. Excited to see this out!
t.co/d7g1SEEB6C
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Social-Science Genomics: Progress, Challenges, and Future Directions
Founded in 1920, the NBER is a private, non-profit, non-partisan organization dedicated to conducting economic research and to disseminating research findings among academics, public policy makers, an...
https://t.co/d7g1SEEB6C
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Andrea Allegrini
Michel Nivard
over 1 year ago
I have been (foolishly?) searching for peak 2015-2017 twitter "science on socials" magic... In an experiment to recapture that excitement, I talked to
@eikofried.bsky.social
, in what might veer into podcast territory(?), about a new GWAS of Depression (N > 5 million)
www.youtube.com/watch?v=vHvB...
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is this an accidental Podcast? Eiko Fried & Michel Nivard discuss a new GWAS of depression preprint
I had a chat with Eiko Fried about a new GWAS of Depression in 685.000 cases and 4.3 million controls... That's like all of Denmark? Here is the GWAS: https:...
https://www.youtube.com/watch?v=vHvBzFQWqRg
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Andrea Allegrini
Graham Coop
over 1 year ago
Congratulations to Carl Veller on the publication of his article on confounding in population and family GWAS
journals.plos.org/plosbiology/...
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Interpreting population- and family-based genome-wide association studies in the presence of confounding
GWASs aim to estimate direct effects of genotype on an individual’s phenotype, but this can be subject to genetic and environmental confounds and
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3002511
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Andrea Allegrini
Michel Nivard
over 1 year ago
I kicked off a series of posts on the "end of GWAS" . It'll be 5 posts, an intro and posts on GWAS of Height, depression, education and schizophrenia, each ample size > 500.000 individuals. I wrote these between jobs to think about whats next for my field & me
nivard.substack.com/p/gwas-endga...
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GWAS: endgame Vol. 1
What will the first of the last GWAS look like, whats after GWAS?
https://nivard.substack.com/p/gwas-endgame-vol-1
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reposted by
Andrea Allegrini
Leonard Frach
over 1 year ago
Our paper on genetic transmission and genetic nurture effects on conduct problems is now published in Molecular Psychiatry! This version includes new analyses
www.nature.com/articles/s41...
a 🧵 1/6
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reposted by
Andrea Allegrini
Michel Nivard
over 1 year ago
We (
@torkildl.bsky.social
and
@eivindy.bsky.social
@tibaier.bsky.social
&
@kph3k.bsky.social
also others not on here) have a paper out studying the origins of widely observed gene-environment correlation for educational outcomes. Paper:
rdcu.be/dv1sp
let me walk you trough it in a thread 1/?
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Andrea Allegrini
Eiko Fried
over 1 year ago
1/22 Our new paper led by Ashley Watts (w Ashley Greene &
@wesbonifay.bsky.social
) is now published; I view it as the first critical evaluation of the statistical and theoretical p-factor & resulting literature. Here a brief overview of the core arguments in the paper.
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Andrea Allegrini
Rebecca Sear
almost 2 years ago
Some useful advice here, but isn't the main reason everyone hates grant writing the very low success rate? A system which requires so much wasted effort just doesn't seem efficient Most scientists don’t enjoy writing grants. Here’s how to change that
www.nature.com/articles/d41...
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Most scientists don’t enjoy writing grants. Here’s how to change that
Specialists share how to make the experience more enjoyable and foster a sense of belonging. Specialists share how to make the experience more enjoyable and foster a sense of belonging.
https://www.nature.com/articles/d41586-023-03871-0
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My first post here! advertising our working paper on the 'Intergenerational transmission of polygenic predisposition for neuropsychiatric traits on emotional and behavioural difficulties in childhood'
osf.io/preprints/ps...
- feedback is welcome!
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OSF
https://osf.io/preprints/psyarxiv/w4psd
almost 2 years ago
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