Kevin England
@kevinengland.bsky.social
📤 192
📥 222
📝 23
i🦠microbiology | PhD student @ Cornell Microbiology | Interested in alarmones and bacterial genetics
reposted by
Kevin England
bioRxiv Genetics
9 days ago
The ω subunit stabilizes transcribing RNA polymerase to balance processivity and collision resolution
https://www.biorxiv.org/content/10.64898/2026.05.17.725479v1
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Incredibly fascinating work by the Landick and Darst labs: ppGpp regulates pausing of elongating RNA polymerase via allosteric inhibition, competitive inhibition at the active site, and depletion of GTP levels
#microsky
add a skeleton here at some point
8 days ago
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The Cornell Botanic Gardens manages 500 acres on campus and >20 preserves off campus. My 2026 goal of "blue lining" as many as possible is off to a good start! Basically, I just search [for hours] for perennial streams and see if fish live there. (Wild fish were kept wet and promptly released!)
23 days ago
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"(p)ppGpp: the magic goes on" by Katarzyna Potrykus et al.
journals.asm.org/doi/full/10....
A great new comprehensive review on (pp)pGpp 🦠
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(p)ppGpp: the magic goes on | Microbiology and Molecular Biology Reviews
SUMMARYBacteria are constantly exposed to changing environmental conditions, and to survive they need to adapt quickly, adjusting their gene expression and metabolism to make the most of the resources available. One of the mechanisms involved is the stringent response, characterized by production of specific guanosine derivatives—ppGpp and pppGpp (collectively called (p)ppGpp). These regulators exert their action and coordinate a global response at many different levels, for example, transcription, translation, nucleotide metabolism, DNA replication, and carbon and lipid metabolism. In this review, we discuss how (p)ppGpp is synthesized and degraded, how it controls different cellular processes and their interplay with other second messengers. A description of differences in (p)ppGpp regulation in Gram-negative and Gram-positive bacteria, along with recent findings and some historical perspectives, is provided. We argue that although much is known about the stringent response and the novel discoveries are definitely advancing the (p)ppGpp field, they are not exhaustive. Instead, they seem to constantly point to aspects that are still waiting to be uncovered—thus, the (p)ppGpp magic goes on.
https://journals.asm.org/doi/full/10.1128/mmbr.00413-25
24 days ago
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reposted by
Kevin England
Magnus Johansson
about 1 month ago
Excited to share our latest work, now available on bioRxiv!
doi.org/10.64898/202...
Huge thanks to everyone involved: first authors Misha and Anneli; our collaborators Shirin, Daniel, and Maria (
@selmerlab.bsky.social
); and Caro, who started the project some eight years ago… Details in comments
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https://doi.org/10.64898/2026.04.23.720132
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Kevin England
Kumaran Ramamurthi
about 1 month ago
Bacterial rRNAs are highly modified, but their functions are often mysterious. Zac Park says that methylation of 16S rRNA by MraW(RsmH) enhances translation of structured mRNAs. Thus, mRNA structure and rRNA modifications likely co-evolved to fine-tune protein dosage.
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.04.20.719615v1.full.pdf
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Kevin England
Frances Yap
about 1 month ago
Seemingly unrelated mutations boost multidrug resistance by promoting ribosome synthesis. Out in
#mBio
@asm.org
, 1st author
@lescorneta.bsky.social
, great collaboration w/ Dapeng Zhang's and Jade Wang's groups.
@nu-bsa.bsky.social
#MicroSky
#ribosome
#AMR
journals.asm.org/doi/10.1128/...
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Inactivation of a purine biosynthesis repressor promotes ribosome synthesis to overcome antibiotic stress | mBio
The Erm rRNA methyltransferase superfamily represents the most prevalent determinant of MLS resistance in nosocomial Gram-negative and Gram-positive bacteria. Previous studies have established that erm expression is primarily governed by upstream ribosome stalling peptide and the 5′ untranslated regions. Using the widespread S. aureus ermBL-ermB (ermB+) operon as a model system, we unexpectedly identified second-site mutations in purR that synergistically enhance MLS resistance in an ermB+ background. Loss of purR function derepresses nucleotide biosynthesis and ribosome production, thereby promoting bacterial growth under antibiotic stress. While numerous purR single-nucleotide polymorphisms across multiple species have been associated with antibiotic resistance, no study has directly linked these sequence polymorphisms to their regulatory function. Our results highlight the critical role of ribosome abundance and nucleotide metabolism in shaping antibiotic efficacy.
https://journals.asm.org/doi/10.1128/mbio.00118-26
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reposted by
Kevin England
Zeynep Baharoglu
about 1 month ago
doi.org/10.1128/mbio...
🦠
#rnasky
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Landscape and dynamics of TadA-dependent RNA editing in Escherichia coli reveal a role in nutrient-rich growth | mBio
Adenosine-to-inosine (A-to-I) mRNA editing is a recently discovered post-transcriptional mechanism in bacteria, yet its regulation and physiological roles remain poorly understood. In this study, we e...
https://doi.org/10.1128/mbio.00551-26
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reposted by
Kevin England
Ben Wikler
about 2 months ago
This is the way
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Kevin England
Microbial Gene Expression - EGM - CNRS UMR8261 - IBPC
about 2 months ago
🚨 Preprint Alert 🚨 New preprint from our research department, in Maude Guillier's team. Congrats to first author Jade Mathis de Fromont and co-authors! To find out about SamT, a modulator of a two-component system in enterobacteriacea, follow the link :
doi.org/10.64898/202...
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reposted by
Kevin England
Furqan Fazal
about 2 months ago
Excited to share our
@natprot.nature.com
paper on using RNA proximity labeling to map subcellular RNA transcriptomes. We’ve been working in this area for a while and wanted to create a resource paper to guide the uninitiated reader.
rdcu.be/fblvI
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APEX-seq maps transcriptome-wide subcellular RNA localization in living cells
Nature Protocols - This Protocol describes the transcriptome-wide labeling of RNAs in a particular subcellular compartment using proximity biotinylation by localized APEX2 enzyme and subsequent...
https://rdcu.be/fblvI
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Kevin England
about 2 months ago
Quorum sensing regulation is no joke! Had a great time writing this review, learning from the past and thinking about the future of LuxR-type receptor research.
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Came across this necessary and sufficient commentary today (or rather indispensable and inducing):
www.tandfonline.com/doi/full/10....
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‘Necessary and sufficient’ in biology is not necessarily necessary – confusions and erroneous conclusions resulting from misapplied logic in the field of biology, especially neuroscience
In this article, we describe an incorrect use of logic which involves the careless application of the ‘necessary and sufficient’ condition originally used in formal logic. This logical fallacy is c...
https://www.tandfonline.com/doi/full/10.1080/01677063.2018.1468443
about 2 months ago
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reposted by
Kevin England
Molecular Microbiology
2 months ago
👉 YqeK governs the acquisition and removal of nucleoside tetraphosphate caps in Firmicutes:
academic.oup.com/nar/article/...
@narjournal.bsky.social
#subtiwiki
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YqeK governs the acquisition and removal of nucleoside tetraphosphate caps in Firmicutes
Abstract. Nucleoside tetraphosphate (Np4) caps have heretofore been reported in only one bacterial species: the model Gram-negative organism Escherichia co
https://academic.oup.com/nar/article/54/6/gkag238/8539531
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reposted by
Kevin England
Max
2 months ago
Very happy to share our latest work on translation initiation and its regulation in S. aureus. If you are interested in
#ribosomes
,
#bacteria
and
#translation
, this one is for you! Very grateful to all co-authors, especially
@bahcer.bsky.social
for an amazing job at Cryo-EM data processing!
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Extended Shine-Dalgarno motifs govern translation initiation in Staphylococcus aureus - Nature Communications
Kohl et al. combine high-resolution Ribo-seq and cryo electron microscopy to show that the bacterium Staphylococcus aureus uses extended Shine-Dalgarno motifs to initiate translation, which can m...
https://www.nature.com/articles/s41467-026-69079-8
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reposted by
Kevin England
Félix Ramos-León
2 months ago
Our work on understanding how Staphylococcus aureus mode of cell division contributes to pathogenesis is now available in bioRxiv
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reposted by
Kevin England
Craig Kaplan
3 months ago
Just amazing what evolution can come up with. Naturally occurring nuclease deficient Cas12 family members use gRNAs to bind DNA and recruit sigmaE family members that drive txn initiation proximally. 2 papers! 1- describes 2- structure!
www.nature.com/articles/s41...
www.nature.com/articles/s41...
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Exapted CRISPR–Cas12f homologues drive RNA-guided transcription - Nature
Specialized σ factors interact with nuclease-dead, CRISPR–Cas12f proteins to form potent, RNA-guided gene activation systems that function independently of fixed promoter motifs.
https://www.nature.com/articles/s41586-026-10166-7
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reposted by
Kevin England
bioRxiv Microbiology
3 months ago
Rifampicin-induced Staphylococcus aureus persister formation is driven by CodY regulon and oxidative stress level
https://www.biorxiv.org/content/10.64898/2026.03.03.709237v1
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reposted by
Kevin England
Heather Feaga
3 months ago
Ribosome is everything! Everything else just there for ribosome.
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"Mike Cashel: magic spot magician"
journals.asm.org/doi/full/10....
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Mike Cashel: magic spot magician | Journal of Bacteriology
In July 2025, we lost Mike Cashel, a gifted scientist and critical contributor to the bacterial research community, after a long illness. Through his studies on (p)ppGpp and its modes of action, Mike ...
https://journals.asm.org/doi/full/10.1128/jb.00588-25
3 months ago
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reposted by
Kevin England
Gert Bange
3 months ago
AP4A functions as a regulatory switch of protein acetylation, connecting stress signaling to central metabolism.
@synmikro.bsky.social
@unimarburg.bsky.social
@mpimicrobiomarburg.bsky.social
Enjoy the reading:
www.nature.com/articles/s41...
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A protein adaptor mediating Ap4A-dependent control of protein acetylation - Nature Communications
This study identifies AcuB as a conserved inhibitor of the deacetylase AcuC in bacteria. AcuB directly suppresses AcuC activity, and this inhibition is enhanced the alarmone diadenosine tetraphosphate...
https://www.nature.com/articles/s41467-026-70006-0
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reposted by
Kevin England
Grainger Lab
4 months ago
In our most recent work David Forrest has discovered a widespread mechanisms linking transcription initiation to DNA supercoiling...
www.nature.com/articles/s41...
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The bacterial RNA polymerase-associated CarD protein couples promoter activity to DNA supercoiling - Nature Communications
The transcription factor CarD facilitates the activation of transcription in many bacteria and in Rhodobacter sphaeroides, CarD compensates for suboptimal promoter DNA sequences. Here, the authors sho...
https://www.nature.com/articles/s41467-026-69038-3
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reposted by
Kevin England
Marie Winz
4 months ago
4 - Still lots to learn about this mysterious factor. 🔗 Read the paper:
academic.oup.com/nar/article/...
Funded by
@dfg.de
via SFB TRR319-RMaP 🙏
#RibosomeBiology
#TranslationQC
#RNA
#Nanopore
#Yeast
#PhDPosition
#DFG
#RMaP
#New1
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Yeast elongation factor homolog New1 protects a subset of mRNAs from degradation by no-go decay
Abstract. New1 is a homologue of the essential yeast translation elongation factor eEF3. Lack of New1 has been shown to induce ribosome queuing upstream of
https://academic.oup.com/nar/article/54/3/gkag047/8444038
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reposted by
Kevin England
Jennifer Goff, PhD
4 months ago
journals.asm.org/doi/10.1128/...
We have a new paper out that looks at metabolic adaptations to mildly acidic conditions in a denitrifier isolated from acidic, nitrate-contaminated groundwater. 🧵
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Contrasting effects of glutamate and branched-chain amino acid metabolism on acid tolerance in a Castellaniella isolate from acidic groundwater | Applied and Environmental Microbiology
Nitrate pollution in groundwater is a major threat to both environmental and human health. This nitrate pollution can come from a variety of sources, including farm fertilizers, sewage, animal waste, ...
https://journals.asm.org/doi/10.1128/aem.01942-25
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reposted by
Kevin England
Nadia Nikulin
4 months ago
First paper of my PhD
@doerrlab.bsky.social
is up! We characterized meropenem tolerance in Enterobacterales species, and then further dissected tolerance mechanisms in Klebsiella pneumoniae.
journals.plos.org/plospathogen...
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Prevalence and mechanisms of high-level carbapenem antibiotic tolerance in clinical isolates of Klebsiella pneumoniae
Author summary Bacteria can survive exposure to antibiotics by constantly repairing cellular damage induced by the drug. This “antibiotic tolerance” enables diverse bacteria to survive long enough to ...
https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1013919
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reposted by
Kevin England
bioRxiv Microbiology
4 months ago
Phage Portal Proteins Suppress Bacterial Stringent Response to Promote Infection
https://www.biorxiv.org/content/10.64898/2026.01.27.700999v1
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reposted by
Kevin England
Kevin M. Kruse
4 months ago
If you're living somewhere outside the USA, one thing you can do is pressure your leaders to boycott World Cup and Olympic events here.
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reposted by
Kevin England
Molecular Microbiology
4 months ago
How do bacteria sense the antibiotic rifampicin? They employ a widespread dual-promoter based alarm system!
academic.oup.com/nar/article/...
@narjournal.bsky.social
#subtiwiki
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Validate User
https://academic.oup.com/nar/article/54/2/gkaf1407/8425345
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reposted by
Kevin England
CNY ASM
4 months ago
Excited to announce the re-establishment of the Central New York Branch of the American Society for Microbiology (CNY ASM)! Founded in 1921, revived in 2025 to support collaboration, inclusive programming, and microbiologists at all career stages! This is our official BlueSky account!
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reposted by
Kevin England
George O'Toole (he/him/his)
4 months ago
Summer REU in biofilms! Pls share.
www.binghamton.edu/centers/biof...
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Research Experience for Undergraduates (REU) | Biofilm Research Center | Binghamton University
https://www.binghamton.edu/centers/biofilm-research/reu/index.html
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reposted by
Kevin England
bioRxiv Microbiology
4 months ago
Regulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota
https://www.biorxiv.org/content/10.64898/2026.01.14.699351v1
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reposted by
Kevin England
Stern-Ginossar Lab
4 months ago
Our new paper is out in Nature 🎉. We show that m1Ψ in mRNA vaccines doesn’t just quiet immunity, it also directly enhance translation by reshaping ribosome dynamics in a sequence-dependent way 🧬 Full paper :
rdcu.be/eY5gx
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N1-Methylpseudouridine directly modulates translation dynamics
Nature - N1-Methylpseudouridine enhances the translation of synthetic mRNAs, independently of innate immunity.
https://rdcu.be/eY5gx
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My first first-author paper is posted! Glad to have this out! 🦠🚨🕺 We show that pGpp production depletes GTP, inhibits translation, and remodels the transcriptome faster than (p)ppGpp. ...and more!
add a skeleton here at some point
4 months ago
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reposted by
Kevin England
Wiep Klaas Smits (ExpBac/CMAT)
4 months ago
The Bacillus subtilis class A penicillin-binding protein 4 (PBP4) requires an accessory protein RpdA
www.biorxiv.org/content/10.6...
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The Bacillus subtilis class A penicillin-binding protein 4 (PBP4) requires an accessory protein RpdA
Peptidoglycan (PG) synthesis is essential to maintain cell integrity during bacterial growth and division. In Bacillus subtilis, PG synthesis involves class A PBPs that act independently and class B P...
https://www.biorxiv.org/content/10.64898/2025.12.21.695826v1
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Does anyone know how to make the ′ symbol on Mac? As in guanosine 5′-diphosphate 3′-diphosphate. Just learned that "prime" is its own symbol (′)...and not just an apostrophe (') ‼️
5 months ago
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Kevin England
Ian Hewson
5 months ago
Latest work on the Diadema pathogen and its seasonal occurrence at a time series site
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Kevin England
Lauren
5 months ago
add a skeleton here at some point
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reposted by
Kevin England
Heather Feaga
5 months ago
The sporulation phosphorelay protein Spo0B is membrane localized in Paenibacillus! The transmembrane domain appears to increase interaction with relay partners. Congrats to former lab undergrad
@isabellalin.bsky.social
and her grad mentor
@cassidyprints.bsky.social
journals.asm.org/doi/10.1128/...
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https://journals.asm.org/doi/10.1128/jb.00367-25
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reposted by
Kevin England
Molecular Microbiology
5 months ago
🫳 Metastable folding of Bacillus subtilis glmS ribozyme modulates turnover by RNase J1:
www.sciencedirect.com/science/arti...
#subtiwiki
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Metastable folding of Bacillus subtilis glmS ribozyme modulates turnover by RNase J1
Rapid turnover of glmS mRNA in Bacillus subtilis by 5′-3’ exoribonuclease RNase J is essential for feedback regulation of glucosamine-6-phosphate (Glc…
https://www.sciencedirect.com/science/article/pii/S0022283625006783?via%3Dihub
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Kevin England
Boël Lab
5 months ago
In this study, we highlight the importance of the base composition of the first codons for protein expression. An increased abundance of adenine (A) and a decrease in guanine (G) enhance expression and improve mRNA stability. The mediator of this effect is the ribosome.
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reposted by
Kevin England
bioRxiv Microbiology
5 months ago
The Bacillus subtilis class A penicillin-binding protein 4 (PBP4) requires an accessory protein RpdA
https://www.biorxiv.org/content/10.64898/2025.12.21.695826v1
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reposted by
Kevin England
bioRxiv Microbiology
5 months ago
Persister Cells Form Based on Low Ribosome Content
https://www.biorxiv.org/content/10.64898/2025.12.18.695105v1
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Kevin England
Ákos T Kovács
5 months ago
The FsrA-Mediated Iron-Sparing Response Regulates the Biosynthesis of the Epipeptide EPE in Bacillus subtilis
#MolMicrobiol
by Sarah Miercke, Rabea Ghandour, Kai Papenfort and Thorsten Mascher
onlinelibrary.wiley.com/doi/10.1111/...
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The FsrA‐Mediated Iron‐Sparing Response Regulates the Biosynthesis of the Epipeptide EPE in Bacillus subtilis
Under iron-limited conditions, FsrA base-pairs with the intergenic region between epeX and epeE, enhancing epeE translation and triggering EPE production. Toxin-mediated cell lysis releases nutrients....
https://onlinelibrary.wiley.com/doi/10.1111/mmi.70039
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Kevin England
anna brogan
5 months ago
Fer’s tour de force in B. anthracis is out! Fer got Tn-seq running, built an ordered knockout library, defined all essential sporulation genes, and found a peptidoglycan deacetylase inhibitor critical for engulfment. Including our first one-by-all Alphafold screen!
journals.plos.org/plosbiology/...
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Identification of sporulation genes in Bacillus anthracis highlights similarities and significant differences with Bacillus subtilis
How good is Bacillus subtilis as a model for the spore-forming pathogen Bacillus anthracis? Using high throughput genetics to identify B. anthracis sporulation genes and cytological analysis of the mu...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003521
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Kevin England
Ákos T Kovács
5 months ago
Identification of sporulation genes in Bacillus anthracis highlights similarities and significant differences with Bacillus subtilis
@plosbiology.org
from David Rudner
journals.plos.org/plosbiology/...
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Identification of sporulation genes in Bacillus anthracis highlights similarities and significant differences with Bacillus subtilis
How good is Bacillus subtilis as a model for the spore-forming pathogen Bacillus anthracis? Using high throughput genetics to identify B. anthracis sporulation genes and cytological analysis of the mu...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003521
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Kevin England
Lauren
over 1 year ago
it’s the most wonderful time of the year 🎄
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reposted by
Kevin England
Snorre Sulheim
6 months ago
Do you think transporters in E. coli contribute to metabolite release? No? Explore the effect of 66 different transporter knockout mutations on the exometabolome dynamics of ~300 metabolites yourself:
keio.unil.ch
Teaser: Increased proline in ΔputP
#microsky
#MEvoSky
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Kevin England
Zeynep Baharoglu
6 months ago
Unraveling the prevalence and multifaceted roles of accessory peptide deformylases in bacterial adaptation and resistance url:
academic.oup.com/mbe/article/...
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Unraveling the prevalence and multifaceted roles of accessory peptide deformylases in bacterial adaptation and resistance
Abstract. Peptide deformylases (PDFs) are enzymes that are essential for bacterial viability and attractive targets for antibiotic development. Yet, despit
https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf311/8357255
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Kevin England
Jennifer Goff, PhD
6 months ago
journals.asm.org/doi/10.1128/...
We have a new paper out, led by my PhD student Linda! Ni and Cu are common co-occurring contaminants. They are also synergistic in their toxicity. We examined the mechanisms of this synergism, finding that sulfur assimilation and Fe-S cluster biogenesis are targets.
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The molecular basis of the synergistic toxicity of nickel and copper, common environmental co-contaminants | Applied and Environmental Microbiology
Many environments are contaminated by metals. These metals are toxic to the microorganisms that inhabit these environments and carry out important ecosystem services. While much is known about bacteri...
https://journals.asm.org/doi/10.1128/aem.01627-25
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Kevin England
Frances Yap
6 months ago
Not all RelE toxins are created equally. RelE1, E2 cut 16S rRNA, RelE3 degrades mRNA in a ribosome-dependent manner.
#MicroSky
#Ribosome
🧪
#RNASky
⬇️
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