Cole J. Batty
@colebatty.bsky.social
📤 191
📥 218
📝 45
NIH T32 Fellow in the Marasco Lab at Dana Farber/Harvard Medical School studying B cells in aging
reposted by
Cole J. Batty
Bryan Bryson
16 days ago
The
@ragoninstitute.bsky.social
is launching a new faculty search for a computational immunologist! Applications are open now and reviewed on a rolling basis. Please share broadly with your networks!
#immunosky
www.nature.com/naturecareer...
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Computational Immunologist - Boston, Massachusetts (US) job with Ragon Institute of MGH, MIT, & Harvard | 12849577
The Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard in Cambridge MA, together with the Departmen
https://www.nature.com/naturecareers/job/12849577/computational-immunologist/
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Cole J. Batty
Waggoner Lab
21 days ago
Plasma-localized IgG glycosylation is dynamically altered by the endothelium
www.pnas.org/doi/10.1073/...
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Cole J. Batty
Waggoner Lab
27 days ago
A common progenitor gives rise to fibroblastic reticular cells and vascular smooth muscle cells in murine lymph nodes
@jem.org
rupress.org/jem/article/...
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Cole J. Batty
bioRxiv Immunology
about 2 months ago
B lymphocytes that enter the germinal center late preferentially differentiate into memory cells that recognize subdominant epitopes
https://www.biorxiv.org/content/10.1101/2025.10.30.685663v1
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Cole J. Batty
bioRxiv Immunology
2 months ago
Autoantibody origins in lupus and in relapse post CAR-T therapy
https://www.biorxiv.org/content/10.1101/2025.10.20.683393v1
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Cooler techniques available every day!
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2 months ago
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Cole J. Batty
bioRxiv Immunology
3 months ago
Enhanced human antigen-specific B cell responses using in vitro 3D tonsil cultures containing stromal cells
https://www.biorxiv.org/content/10.1101/2025.09.30.679470v1
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Cole J. Batty
Adrian Liston
3 months ago
In the US it is called “Dawn”. We haven’t tried this, but the U.K. and Belgian brands both work fine. If you try Dawn please let us all know!
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Cole J. Batty
Adrian Liston
3 months ago
Just take a look. The Foxp3 fix/perm kit is good for TFs, but kills endogenous GFP. The eBio preserves GFP, but is incomplete at allowing TF staining. Burton's Best Buffer is as good as the best under all conditions (except phospho-flow), and preserves dye integrity too. Plus it is dirt cheap. 🎤
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Cole J. Batty
bioRxiv Immunology
4 months ago
PRDM1 shapes germinal center B-cell clonal diversity by gating chromatin accessibility during light-to-dark zone transition
https://www.biorxiv.org/content/10.1101/2025.08.27.672737v1
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Cole J. Batty
Waggoner Lab
5 months ago
Modulation of B cell receptor activation by antibody competition
@cp-cellreports.bsky.social
www.cell.com/cell-reports...
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Cole J. Batty
bioRxiv Immunology
6 months ago
Isolation of genetically diverse influenza antibodies highlights the role of IG germline gene variation and informs the design of population-comprehensive vaccine strategies
https://www.biorxiv.org/content/10.1101/2025.07.04.663145v1
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Cole J. Batty
Adrian Liston
6 months ago
Pre-print time! Our new study on
#systemsimmunology
analysis of
#Alzheimers
patients is out now on
@medrxivpreprint.bsky.social
. This is the culmination of a long collaboration with Rik Vandenberghe, Stephanie Humblet-Baron and Lidia Yshii's labs at KU Leuven. 🧵1/8
www.medrxiv.org/content/10.1...
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A systems immunology analysis of Alzheimer’s disease reveals an age- and environmental exposure-independent disturbance in B cell maturation
Alzheimer’s disease is a severe neurodegenerative disorder, with multifactorial mechanisms of disease development and progression. Evidence from genetic association studies, animal models, and clinica...
https://www.medrxiv.org/content/10.1101/2025.06.16.25329692v1
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Cole J. Batty
Waggoner Lab
7 months ago
Preprint: In vitro induction of human germinal center B-cells
www.researchsquare.com/article/rs-6...
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Cole J. Batty
Eliver Ghosn
7 months ago
We are still recruiting a B-cell immunologist to join our team and lead projects funded by the Gates Foundation and NIH. If you are looking for a postdoc or a more senior Staff Scientist position, please apply! Please repost to help reach out to our colleagues affected by recent RIFs. Thank you!
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Don't sleep on LINE1s!
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8 months ago
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Rest in peace to inspiring scientist and mentor Michael Cancro
www.cell.com/immunity/ful...
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Michael Cancro (1949–2025)
Just a few weeks ago, researchers and educators connected to immunology lost a wonderful friend and colleague: Michael Cancro, professor of pathology and lab medicine at the University of Pennsylvania, passed away suddenly at his home just outside Philadelphia. He will be deeply missed.
https://www.cell.com/immunity/fulltext/S1074-7613(25)00130-X
9 months ago
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Cole J. Batty
Eliver Ghosn
9 months ago
We are
#Hiring
! Please share!
#ImmunoSky
🧪 Join our multi-disciplinary B-cell team @Emory/ATL to lead exciting projects on human immunology funded by the Gates Foundation and the NIH (Position fully funded and not dependent on future grants).
ghosnlab.science/join-us
#BYourCell
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Cole J. Batty
Waggoner Lab
9 months ago
Two distinct durable human class-switched memory B cell populations are induced by vaccination and infection
@cp-cellreports.bsky.social
www.cell.com/cell-reports...
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Cool
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9 months ago
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Cole J. Batty
Davide Angeletti
9 months ago
Our latest study by PhD student
#RomainGailleton
shows that upon
#influenza
infection,
#Bcell
can respond rapidly by forming ectopic
#GerminalCenter
within the nasal tissue. The work has just been published in
@pnas.org
(1/N)
www.pnas.org/doi/10.1073/...
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Ectopic germinal centers in the nasal turbinates contribute to B cell immunity to intranasal viral infection and vaccination | PNAS
The nasal mucosa is the first immunologically active site that respiratory viruses encounter and establishing immunity at the initial point of path...
https://www.pnas.org/doi/10.1073/pnas.2421724122
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Cole J. Batty
Brian Space
10 months ago
@labonnelab.bsky.social
overcast.fm/+AA5AWObyBF8
What an unbelievably great appearance with amazing focus and insight by Professor LaBonne. Thank you so much!
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Trump’s NIH Cuts Send Shockwaves Through the Science World — Odd Lots
https://overcast.fm/+AA5AWObyBF8
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I'm happy to have played a small part in this first paper from an ongoing collaboration between the Marasco, Sage, Haigis, and Hemberg labs to decipher mechanisms of poor influenza vaccine response in older individuals
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10 months ago
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Cole J. Batty
Immunity
10 months ago
Online now: Online now: Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
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Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
To understand the influence and longevity of early influenza imprinting, Spangler et al. investigate the response to an H2 HA vaccine in individuals with and without exposure to H2N2 virus 50 years ago. They find that those with prior exposure have a…
http://dlvr.it/TJFgN8
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Cole J. Batty
Brian Stevenson Ph.D. spirochete lab
10 months ago
The NIH funding freeze has blocked 3 of our grant proposals (so far), which threatens to shut down our Lyme disease research program within a year. 🦠🧫🧪🧬🔬
#MicroSky
www.reuters.com/business/hea...
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Trump administration loophole snags US research grants from Lyme to lung disease
The Trump administration has for weeks been blocking the U.S. National Institutes of Health process for issuing new research grants for everything from Lyme disease to lung and heart disease, according to researchers, a departing NIH official and documents.
https://www.reuters.com/business/healthcare-pharmaceuticals/trump-administration-loophole-snags-us-research-grants-lyme-lung-disease-2025-02-26/
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Cole J. Batty
Scott Delaney
10 months ago
NIH indirects case update: Hearing ongoing now, and I'll try to live tweet some notable exchanges. Prior to more detailed arguments, Judge Kelley starts off with a few point questions to both sides: (I'm paraphrasing here)
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Cole J. Batty
Stand Up for Science!
10 months ago
☀️📣 Looking for a STATE LEAD and VOLUNTEERS to help us
#standupforscience2025
in North Carolina! Know someone interested? Fill out this form:
airtable.com/app4h5wUssMG...
#scienceforall
#sciencenotsilence
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Cole J. Batty
The Transmitter
10 months ago
A large portion of grants awarded by the U.S. National Institutes of Health cannot be funded for the foreseeable future because of an indefinite hold on submissions to the Federal Register, according to an email reviewed by The Transmitter. By
@avaskham.bsky.social
bit.ly/3X8ngz8
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Federal Register hold makes ‘end run’ around court pause on NIH funding freeze
NIH-related updates to the Federal Register, which are required for the scheduling of study sections and advisory councils, are on hold indefinitely, according to an email reviewed by <i>The Transmitt...
https://www.thetransmitter.org/funding/federal-register-hold-makes-end-run-around-court-pause-on-nih-funding-freeze?utm_source=bsky&utm_medium=org-social&utm_campaign=20250218-federal-register-hold-makes-end-run-around-court-pause-on-nih-funding-freeze/
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Cole J. Batty
Jeremy Berg
10 months ago
ATTENTION (PLEASE SHARE) If anyone has or knows of any positions that might be appropriate for the NIH staff members who were terminated, please post the information in this thread. There are lots of talented and accomplished people who may be looking for new opportunities.
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Cole J. Batty
Corey Watson
10 months ago
Did you know that human immunoglobulin constant genes are crazy diverse? It's got me thinking...Proud of Uddalok Jana! And grateful for collabs
@guryaari.bsky.social
@williamlees.bsky.social
@ayeletperes.bsky.social
@e-engelbrecht1.bsky.social
@yscientist.bsky.social
www.biorxiv.org/content/10.1...
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The human immunoglobulin heavy chain constant gene locus is enriched for large complex structural variants and coding polymorphisms that vary in frequency among human populations
The immunoglobulin heavy chain constant (IGHC) domain of antibodies (Ab) is responsible for a variety of effector functions critical to Ab mediated immunity. In human, this domain is encoded by genes ...
https://www.biorxiv.org/content/10.1101/2025.02.12.634878v1
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That's a strange mistake to make!
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11 months ago
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Cole J. Batty
Andy Fraser
11 months ago
Delighted to share our latest paper describing a method to read the levels of hundreds of metabolites or drugs in parallel using DNA sequencing. This method, which we call ‘smol-seq’ (Small MOLecule sequencing), harnesses the power of DNA sequencing for metabolite detection:
rdcu.be/d8xLv
(1/6)
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Quantifying metabolites using structure-switching aptamers coupled to DNA sequencing
Nature Biotechnology - Metabolites can be quantified using a combination of aptamers and DNA barcodes.
https://rdcu.be/d8xLv
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Cole J. Batty
Alexander Dent
11 months ago
Absolutely fascinating story showing different functions for CD4 vs CD8 regulatory cells in humoral immunity and the role of Foxp3 vs Granzyme B.
#ImmunoSky
#GCBcellSky
#TfhSky
www.nature.com/articles/s41...
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Differential roles of human CD4+ and CD8+ regulatory T cells in controlling self-reactive immune responses - Nature Immunology
Here the authors use a tonsil organoid culture model system to investigate the roles of human CD4+ and CD8+ regulatory T cells in controlling self-reactive immune responses. CD4+ regulatory T cells we...
https://www.nature.com/articles/s41590-024-02062-x
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Cole J. Batty
Izabella A. Pena, PhD 🇧🇷🇨🇦
11 months ago
Here is a quick thread to promote my research! After years of dedicated research, I'm thrilled to share our article just published at Nature Communications :)
www.nature.com/articles/s41...
#metabolism
#CRISPRscreens
#mitochondria
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SLC25A38 is required for mitochondrial pyridoxal 5’-phosphate (PLP) accumulation
Nature Communications - Pyridoxal 5’-phosphate (PLP, vitamin B6) is crucial for various metabolic processes. Here, the authors identified SLC25A38 as a key regulator of mitochondrial PLP...
https://www.nature.com/articles/s41467-025-56130-3.epdf?sharing_token=VgVlbtiPZe0h7yV0_4_PptRgN0jAjWel9jnR3ZoTv0Nhm0QyuLIv8Qe-5OmKY69xB_Oi-UpNjHXp1Lm194cGcEadNjhfAs9jmg20asS6DEytess1hbaU1t3p5e0ilkKNSTWNlXQVor6P8KO6enFr2jsKu7A6YMRXkJKhhF1fIkk%3D
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Cole J. Batty
C.H. Romatowski
11 months ago
Seeking New Englanders with pre-2020 ME/CFS!
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Cole J. Batty
Immcantation
11 months ago
Interested in B cell receptor repertoire analysis? We have a great set of speakers lined up for the “2025 Immcantation Users Group Meeting!” Check out the program and register for this free virtual meeting 1/30/25 10AM-1:40PM (ET) at:
immcantation.github.io/users-meetin...
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11 months ago
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Cole J. Batty
Yavuz Yazicioglu
about 1 year ago
Thrilled to share our latest work on how the non-essential amino acid
#asparagine
metabolically regulates germinal centers. Huge thanks to my PhD supervisor
@ajclarke.bsky.social
, colleagues, and collaborators at the
@ndorms.bsky.social
@ox.ac.uk
and
@crick.ac.uk
www.science.org/doi/10.1126/...
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Asparagine availability controls germinal center B cell homeostasis
Asparagine metabolism is a critical regulator of germinal center B cell function.
https://www.science.org/doi/10.1126/sciimmunol.adl4613
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Cole J. Batty
Dr Debbie Burnett
about 1 year ago
I’ve tried to put together a starter pack of immunologists/scientists exploring B Cell Repertoires and Antibody Affinities. Please feel free to share/join!
go.bsky.app/4P64DmM
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