🗣️ We are looking forward to hosting Prof. Jana Roithová from #Radboud University for an #invitedlecture "Mass Spectrometry in Research of Chemical Reactions" next week — on Tuesday, 18 November, at 10:00 ► uochb.cz/en/event-calendar/334 ⤵ #UOCHB #IOCB #IOCBPrague #praguelectures #massspec

Check out our latest Newsletter from October eupa.org/disseminatio... ! A lot of cool things about upcoming events, a throw back on Saint-Malo, and updates from EuPA! Don't miss it out. And if you want to stay updated sign up to our mailing list eupa.org/contact/ !

🚨 Less than 1 month left! 🚨 Students in Europe — want to run your own proteomics experiment? Apply for the YPIC Student Proteomics Fund and get €5,000 to make it happen! 💡 Top 3 will present in Madrid (April 16, 2026)! 🗓️ Deadline: Nov 30, don’t miss your chance! #YPIC #Proteomics #StudentGrant

I try the newest version of DIA-NN, version 2.3 and its new Infini search approach on some Lumos and tismTOF HT datasets. If you're new to DIA-NN this might be a good video to watch. youtu.be/MIMnDw0loCk

AlphaDIA enables DIA transfer learning for feature-free proteomics - @mannlab.bsky.social @jalew188.bsky.social go.nature.com/4qmEQMM

Registration is now open for the EuBIC-MS Winter School 2026! Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS. Info and registration: eubic-ms.org/events/2026-... #EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics

Meet the PIs powering ProtAIomics. Explore the labs & projects and apply for our 16 fully funded PhD positions: www.protaiomics.eu #ResearchCareers #Proteomics #ArtificialIntelligence #MSCA #PhDOpportunities #FullyFundedPhD

11th Informal Proteomic Meeting + CzechMS conference Nov 19 - 21, 2025, Ceske Budejovice, Czechia Abstract submission extended till Monday, October 13 czproteo.cz/nps_aktualni/ #Proteomics #neformal2025

The 2025 #NobelPrize in Chemistry was awarded today for the development of metal-organic frameworks, molecular sponges with applications in gas storage, water purification and more: www.compoundchem.com/2025/10/08/2... #ChemSky 🧪

mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format #JProteomeRes pubs.acs.org/doi/10.1021/...

🎉 Exciting opportunity for students in proteomics! 🎉 The Student Proteomics Fund (SPF) is back! 📅 Key dates: Call opens: October 1, 2025 Submission deadline: November 30, 2025 Don’t miss your chance to bring your research idea to life! New boost #SPF #YPIC #Proteomics

Are you using DIA mass spectrometry in proteomics? We have just put this paper online: www.biorxiv.org/content/10.1... Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs) 1/4

Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline Presenters: Eduard Sabidó and Brendan MacLean When: Tuesday, September 16, 8am (Pacific Time) Register Now ... skyline.ms/project/home... #massspec #proteomics

Join us for 19th YPIC Webinar – “Transition from Academia to Start-Up” Ever wondered what it takes to turn your research into a company?! 🧪 Information in comments! #YPIC #Proteomics #ScienceToStartup #ScienceCareers #Entrepreneurship #Biotech #AcademicTransition #Webinar #StartUpScience

CSBMB 28th Biochemistry Congress csbmb2025.cz #Proteomics Section concludes with Targeted proteomics talk by Veronika Vidova #CSBMB2025

Major release of @pride-ebi.bsky.social submission tool: - Smarter Java setup — bundled JRE - Reliable file transfer logging with Aspera, FTP. - Clearer instructions and troubleshooting in the README - Automated releases through GitHub Actions, so updates are consistent github.com/PRIDE-Archiv...

Thanks to both Ben @proteomicsnews.bsky.social & @benneely.com for a great chat on ProteomeXchange, HUPO-PSI, #quantms, formats, and PRIDE. I shared my personal view on open data, availability & standards. Feeling privileged to work at EMBL-EBI/PRIDE and grateful to keep learning from my colleagues.

Seems like we keep saying the same things over and over in #science. Every biomedical researcher should have a graduate course in #statistics. My record is $100k USD lost because a post doc had bad (well, no) experimental design for a proteomics project. www.nature.com/articles/s41...

🔬 Join us online for the 8th Differential Analysis of Quantitative Proteomics Data using R! (#free of charge) 📅 16–17 Sep 2025, 9:00–13:00 UTC+2 🧑‍🏫 #R #Beginner course! No prior R skills needed! 🔗 More information and registration: www.denbi.de/training-cou...

I would like to inform you that the registration deadline for our ESCP25 conference is July 27th. We are looking forward to interesting scientific contributions.

If you asked me 5 years ago if it would be possible to use a de novo tool on DIA data, I would have thought it would only exist in science fiction. Love being proved wrong. Great work from Justin Sanders. #proteomics #massspectrometry www.nature.com/articles/s41...

Our paper on ovarian cancer #LGSC is out in @Cancer_Cell. Using deep visual proteomics #DVP and spatial transcriptomics, we mapped how non-invasive tumors become deadly ovarian disease, and found a promising new treatment combination. www.cell.com/cancer-cell/...

Free structural MS hands-on workshop @ BIOCEV (CZ) 📅 Sept 15–19, 2025 For PhDs, postdocs & undergrads (CZ/SK) HDX-MS, native MS, cross-linking, high-res MS, data processing Apply by July 31 → bit.ly/3HNyzIg @spidocs.bsky.social @mbuavcr.bsky.social @ciisbinstructcz.bsky.social

Marie Locard-Paulet presenting the EuBIC-MS #ProteoBench project at the #EuPA2025 conference. 👉 Learn more about our open proteomics software benchmarking platform at proteobench.readthedocs.io. #Proteomics #Bioinformatics #Benchmarking

🚨 Has PRIDE helped your research? Take 15 mins to tell funders why open data matters! 📊 Fill out the EMBL-EBI 2025 survey 👉 www.surveymonkey.com/r/QGFMBH8?ch... Your feedback helps keep PRIDE open, FAIR & impactful. 🙏 Please share! #FAIR #OpenData #Proteomics #MassSpectrometry #PRIDE

Excited to see this published! It is a good step in the process for people to assess their FDR control in proteomics experiments. Great work from @bo-wen.bsky.social and @urikeich.bsky.social in particular who drove this.

Don't miss this opportunity to learn from leading experts and connect with the community! #Proteomics #YPIC #EuPAFPS2025 #ScienceEducation #SaintMalo

🚨Our new paper is online🚨 We use zero-distance⚡photo-crosslinking⚡to reveal direct protein-DNA interactions in living cells, enabling quantitative analysis of the DNA-interacting proteome on a timescale of minutes. #DNA #Chromatin #Proteomics www.cell.com/cell/fulltex...

My first manuscript from @coonlab.bsky.social - Technical Evaluation of Plasma Proteomics Technologies - is now available to read on Journal of Proteome Research! We thoroughly evaluated 5 MS-based and 1 affinity proteomics method for plasma proteomics. pubs.acs.org/doi/10.1021/...

Exciting news: We have released #FragPipe 23, and it's one of our biggest updates ever. Windows installer, support for TMT on Astral and timsTOF, TMT35, PTM site reports for DIA, improved Astral data handling in #MSFragger, improved diaTracer for diaPASEF data, better Skyline integration, and more!

What happens to all those alternative transcripts? 👉 Many are translated. 👉 Proteolytic processing adds even more diversity. Integrated mRNA & protein isoform landscape now out on bioRxiv! 🔗 doi.org/10.1101/2025... #proteomics #transcriptomics #systemsbiology

Get ready to take the next step in your career journey! 🚀 Join us for the SPIDoc's Career Day, connect with professionals and discover diverse career pathways. When: May 16, 2025. Where: Biocev, CZ or online. For details, see the flyer peterslab.org/downloads/SP...

This one was a fun community effort! We cover a ton, including: - What #opensouce is - Why it’s important - Common pitfalls - Challenges + some solutions - Commercialization models Thank you to everyone who made it happen 👏

DIA-MS and targeted #proteomics workshop May 19, 2025, Masaryk University, Brno CZ Organized by CZproteo keynote by Alexey Nesvizhskii @nesvilab.bsky.social Program & Registration: czproteo.cz/workshop-cur...

High-performance proteomics at any chromatographic flow rate These data follow the expected trends as though taken from a textbook ! They illustrate clearly the trade-offs between high and low flow rates.

Dear proteomics aficionados, The famous MaxQuant Summer School is organized again July 21–25, 2025, but spots are filling up! Join the team of Jurgen Cox for hands-on training in MaxQuant, register here: www.eventbrite.de/e/maxquant-s... Best regards, Jürgen Cox, Albert Heck & Pavel Sinitcyn

Our paper is out in Nature today! We use Deep Visual Proteomics (DVP) to dissect α1-antitrypsin deficiency (AATD) in human liver at single-cell resolution. Let us take a tour through proteotoxic stress in intact human tissue — one hepatocyte at a time. www.nature.com/articles/s41...

DDA is still great for many applications, and #MSFragger-DDA+ improves peptide identification sensitivity via full isolation window search. Huge boosts in IDs, including Astral DDA! Fully integrated in #FragPipe, simply annotate your DDA files as DDA+ and RUN. www.nature.com/articles/s41...

Have you already heard about the #ProteomicsMap ? Check it out and find out what great labs are out there, to get help in your projects, collaborate, and network! Check it out here 👉 eupa.org/map/ . Also, don't forget to register 🫵 your proteomics group group.bspr.org/group/register !

The early bird price will go to 270 Euro in April. 52 places left! And yes, whatever you've heard about the meeting is likely real. Including the train. The first session of day 3 is on a private train going to the great finale in woods of Bohemia. Near that castle. #theconferencetoendallconferences

Haven’t sent your abstract for #EUPA2025 yet? There’s still time! Submit by this Friday and bring your research to Saint-Malo. Don’t miss out—get typing and join us! Check out more information here: eupa2025-stmalo.fr/en/

Im teaching here about DIANN (DIA analysis), OpenMS and quantms analysis for DDA. We have lectures about MaxQuant, PeptideShaker, ProteomeXchange, data reuse, standards, @pride-ebi.bsky.social One week fully packed with lectures about the fundamentals of computational proteomics.

Exploring #Proteomics? Join us for a brand new and improved *Analysing Proteomics Data* #bioinformatics #training course this Wednesday 12th March, live online via Zoom 9:30-17:00 GMT/UTC www.bioinformatics.babraham.ac.uk/training.html

🚀 Register now for the Advanced Proteomics Course (16-20 June 2025) at CRG! 🧬 Two travel grants (250€) available. Apply by 31st March 2025—selection based on CV & motivation. More info: courses.crg.eu/events/advancedproteomics 📩 Contact: [email protected] #Proteomics #LifeSciences

Got a brilliant keynote speaker in mind? We're collecting suggestions for the EuBIC‐MS Winter School 2026 in the Czech Republic next January. Share your ideas now: forms.gle/6Y1ibMuezEB1... #EuBIC2026 #TeamMassSpec #ProteomicsSky

Preprint just out: Our international team's perspective on proteomics and AI, led by Tiannan Guo. We outline key areas where global collaboration between AI and proteomics researchers can accelerate biological discoveries and medical applications. Check it out: arxiv.org/abs/2502.15867

Hey #TeamMassSpec & #Proteomics Just like the past years, we, led by Dr. Christina Ludwig, are part of the organization of the amazing Brixen Proteomics Summer School. The first announcement is going on since a couple of days and many more exciting news will follow again soon.

📣 Virtually meet the people running some of the largest proteomics core facilities in Europe! More info and registration:https://eupa.org/wp-content/uploads/2025/01/Join-us-in-Gathertown-in-our-Digital-Proteopolis-World-1.pdf

Get ready for the #EuPA2025 and submit your abstract now! Don't miss this great opportunity and also check out the available travel grants for ECRs. Find here the link for abstract submission: eupa2025-stmalo.fr/en/program/a...! 🪩