Kerstin Ludwig
@kuludwig.bsky.social
π€ 198
π₯ 241
π 22
Group leader at University of Bonn, studying the genomics of birth defects and infectious diseases.
Congratulations!! Exciting news and super well deserved! π₯³π₯³π₯³
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2 months ago
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Ubadah Sabbagh
3 months ago
Woah just discovered this
formatmypaper.com
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FormatMyPaper - The End of Manuscript Formatting
Paste your paper, choose your journal, and let our AI handle the tedious rest. Get back to the science.
https://formatmypaper.com
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I finally made (it on) my first cover π€£ π₯³!! Congratulations to
@hggadvances.bsky.social
, and all my fellow co-editors, for establishing a great genomics journal. And to all authors: if your manuscript still needs a home, consider submitting with us. We would be delighted to handle your paper π«Ά πͺ.
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3 months ago
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Leonard Frach
5 months ago
Very exciting preprint by
@axel-schmidt.bsky.social
,
@kuludwig.bsky.social
and team! Check out Kerstin's thread for overview
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πPaper alert! Extremely excited to share a preprint from our lab! Spearheaded by
@axel-schmidt.bsky.social
, a super talented medical & computational geneticist, we studied latent Epstein-Barr virus (EBV) infection at population-scale. Interested in how this works & what we found? Read along! π
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6 months ago
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Sriram Pendyala
6 months ago
π¨ Most variant screens measure growth or abundance. What do they miss? That variants impact a spectrum of protein and cellular phenotypes. Variant in situ sequencing (VIS-seq) finds whatβs missing: image cells π¬ first, decode later, revealing multi-scale phenotypes for thousands of variants.π 1/9
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6 months ago
π Thrilled to share our new review on how structural variants reshape 3D genome architecture and cause disease! π§¬π Out now in Nature Reviews Genetics:
www.nature.com/articles/s41...
#3D-Genome
#StructuralVariants
#uksh
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Structural variants in the 3D genome as drivers of disease - Nature Reviews Genetics
Disruption of the 3D genome caused by structural variation contributes to developmental disorders and cancer. The authors review the causes and molecular and clinical consequences of position effects ...
https://www.nature.com/articles/s41576-025-00862-x
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So exciting - congratulations!!! πππ
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7 months ago
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Congratulations, this sounds awesome! Looking forward to get this data presented live when you visit us in Bonn forward our Summer School ππ€£
@immunosens.bsky.social
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7 months ago
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Annique Claringbould
7 months ago
Justified standing ovation for Nobel laureate Katalin KarikΓ³ at
#ESHG2025
She shared her adventurous scientific life and life lessons like "If you want to do something, you find a way. If not, you find excuses", and reminded us scientists to thank our near and dear because "they suffer a little bit"
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Congratulations to everyone involved! ππ
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8 months ago
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Cluster of Excellence ImmunoSensation
8 months ago
Hurray! ImmunoSensation will go on! π₯³ The
@dfg.de
just announced that ImmunoSensation3, focussing on Immune Diversity will be funded! Let us
#celebrate
7 more years of
#immunology
in
#Bonn
π
www.immunosensation.de/news/immunos...
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Excellence Strategy Funds Bonn Cluster for Immune Research
The Bonn Cluster of Excellence ImmunoSensation will be funded for a further seven years as part of the Excellence Strategy of the German federal and stateβ¦
https://www.immunosensation.de/news/immunosensation3
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The German Human Genome-Phenome Archive
8 months ago
𧬠Today! Prof. Rami Abou Jamra (Uni Leipzig) speaks on "Genome sequencing for rare disease diagnostics" at the GHGA lecture series Advances in Data-Driven Biomedicine. Donβt miss it! π May 21 | β° 4PM π Register:
dkfz-de.zoom.us/meeting/regi...
#Genomics
#RareDiseases
#GHGA
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Isabelle Zane
8 months ago
@nickywhiffin.bsky.social
at
#VariantEffect25
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Jonathan Frazer
8 months ago
Good morning
#VariantEffect25
! Kicking things off we have Mafalda Dias,
@bennibolo.bsky.social
@muffley.bsky.social
welcoming us to this 8th annual symposium. We have 250 in-person participants, 60 people online, from 20 countries!
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Jonathan Frazer
8 months ago
Diving into the 1st session of
#VariantEffect25
we have David Adams
@davidjadams.bsky.social
from the Wellcome Sanger Institute presenting βDecoding Cancer: Clinical and Functional Roles of Nucleotide Variants in Cancer Genesβ
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Kerstin Ludwig
8 months ago
Can AI-designed binders degrade, aggregate, stain and enrich endogenous proteins in human cells? Check out our new preprint!
www.biorxiv.org/content/10.1...
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Transposon-Display of AI-designed binders enables manipulation of the proteome in human cells
Transposon-Display is a highly scalable screening method that links proteins to their encoding DNA during expression in E. coli via a mutant transposase. Leveraging this system, we identified AI-desig...
https://www.biorxiv.org/content/10.1101/2025.05.11.653342v1
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Anna Cuomo
10 months ago
π’ new preprint alert: So so excited to share our analysis on the impact of common and rare variants on single-cell gene expression in blood, using WGS and scRNA-seq data from nearly 2,000 individuals and 5.4m cells as part of TenK10K phase 1 π§¬
www.medrxiv.org/content/10.1...
π§΅π (1/n)
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Vaughn Smider, MD, PhD
10 months ago
My story: Iβm a single father and cancer researcher whose wife died of a rare cancer. Science and biomedical research is personal to me. Here is my op-ed in my hometown newspaper. Pls fwd.
www.vindy.com/opinion/edit...
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DOGE ends Americaβs golden age of biomedical research
Biomedical research impacts all of us. I became curious about how drugs work after my mom was diagnosed with rheumatoid arthritis when I was a small boy. She received βgold shotsβ as treatment, which ...
https://www.vindy.com/opinion/editorials/2025/03/doge-ends-americas-golden-age-of-biomedical-research/
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Marios Georgakis
10 months ago
Key reads from last week on human genetics, multiomics, and precision medicine π§΅ 1β£New e/sQTL resource from TOPMed In 14,324 whole blood & tissue samples the study detects cis- and trans-e/sQTLs and colocalizes them with 10,000 GWAS signals for 164 traits. π
www.medrxiv.org/content/10.1...
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Jonathan Pritchard
11 months ago
Modern GWAS can identify 1000s of significant hits but it can be hard to turn this into biological insight. What key cellular functions link genetic variation to disease? I'm very excited to present our new work combining associations and Perturb-seq to build interpretable causal graphs! A π§΅
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Nathalie Jurisch-Yaksi
11 months ago
Decoding cilia signaling and function by the one and only
@wachtenlab.bsky.social
Thanks for delivering a fantastic
#FEBS
national lecture at the Norwegian bioscience society winter meeting.
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Yoav Gilad
12 months ago
Friends and colleagues, Iβve written a book on effective functional genomics study design, which will be available on Amazon in a couple of weeks. Sharing the TOC to spark interest. I hope students and those planning genomics experiments will find it useful! Iβll share updates soon
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Axel Visel
12 months ago
Now available as preprint: The ENCODE 4 expanded registry of regulatory elements - 2.35M π§ human cCREs - 927k π mouse cCREs
www.biorxiv.org/content/10.1...
Led by
@moorejille.bsky.social
, this preprint summarizes data and analyses generated by hundreds of contributors across ENCODE 4
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Eva C. Schulte
12 months ago
Happy to share our newest work on
#covid19
#hostgenetics
! An analysis of >1000 whole genomes with
@kuludwig.bsky.social
and Axel Schmidt at University of Bonn and Uniklinik Bonn, the DeCOI consortium and many colleagues from around Germany & beyond.
#plospathogens
journals.plos.org/plospathogen...
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Systematic assessment of COVID-19 host genetics using whole genome sequencing data
Author summary After infection with SARS-CoV-2, symptoms vary widely. On average, individuals who are older, males and those with certain comorbidities tend to be more severely affected by COVID-19. A...
https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1012786
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Shweta Ramdas
12 months ago
Our mentor Casey Brown, apart from being an extraordinary scientist, was a brilliant teacher who loved everything genetics. In his honor, some of the world's leading experts came together to create the 'Casey Brown Lecture Series' on human genetics 1/
shorturl.at/eCm7S
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Casey Brown Lecture Series - YouTube
https://shorturl.at/eCm7S
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Eric Topol
about 1 year ago
Vaccination significantly reduced
#LongCovid
in children and adolescents among ~300,000 kids and teens
www.thelancet.com/journals/ecl...
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Wei-Lin Qiu
about 1 year ago
Excited to share our latest preprint on scE2G β a new model to link enhancers to target genes using single-cell data β with state-of-the-art performance across multiple perturbation benchmarks.
biorxiv.org/cgi/content/...
Read more below! 1/12
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Mapping enhancer-gene regulatory interactions from single-cell data
Mapping enhancers and their target genes in specific cell types is crucial for understanding gene regulation and human disease genetics. However, accurately predicting enhancer-gene regulatory interac...
https://biorxiv.org/cgi/content/short/2024.11.23.624931v1
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Shai Carmi
about 1 year ago
Very interesting work by Tade Souaiaia et al on the non-polygenic architecture of the extremes of complex traits. For many traits, polygenic scores show "regression to the mean" around the tails, as extreme traits are mostly due to rare alleles.
www.biorxiv.org/content/10.1...
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Madhu Pai, MD, PhD
about 1 year ago
Non-native English speakers need 50% more time to write a paper When they do, they face a 2.5 times higher chance of being rejected because of language
journals.plos.org/plosbiology/...
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Magdalena Skipper
about 1 year ago
βA place of joyβ: why scientists are joining the rush to Bluesky For me, it certainly feels good to be here!
@natureportfolio.bsky.social
@bsky.app
www.nature.com/articles/d41...
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βA place of joyβ: why scientists are joining the rush to Bluesky
Researchers say the social-media platform β an alternative to X β offers more control over the content they see and the people they engage with.
https://www.nature.com/articles/d41586-024-03784-6
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Physalia-courses@Online
about 1 year ago
Interested in Structural Variants? Join for this 3-day course with
@sedlazeck.bsky.social
and Luis Paulin in December (2-4):
physalia-courses.org/courses-work...
Weβll cover tools and workflows for SVs using @illumina
@oxfordnanopore.bsky.social
and
@pacbio.bsky.social
data!
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Structural Variant detection and comparison
2-4 December 2024 To foster international participation, this course will be held online
https://physalia-courses.org/courses-workshops/svs/
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Genetics Society UK
about 1 year ago
Congratulations to
@nickywhiffin.bsky.social
on being awarded the Balfour Lecturer! Her innovative contributions on the role of genetic variants in rare diseases are shaping the future of research and discovery. We look forward to her inspiring lecture!
genetics.org.uk/medals-and-p...
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Marion Koopmans
about 1 year ago
Fabulous work with colleagues in Burundi, who took up Mpox sequencing to understand the situation AND are willing to share pre-publication, shows the expanding tree, and evidence for several introductions not taking off. In progress
virological.org/t/preliminar...
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Preliminary analysis of 98 genomic sequences of MPXV clade Ib cases from Burundi, July to September 2024
Preliminary analysis of 98 genomic sequences of MPXV clade Ib cases from Burundi, July to September 2024 Introduction A large mpox clade Ib virus outbreak started in the province of South Kivu in th...
https://virological.org/t/preliminary-analysis-of-98-genomic-sequences-of-mpxv-clade-ib-cases-from-burundi-july-to-september-2024/987
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Roby Bhattacharyya
about 1 year ago
COVID booster study: 58% vaccine effectiveness (95% CI 50-66%) vs hospitalization & 75% VE (95% CI 71-80%) vs death over 24 wks - impressive in a population already vaccinated 4x previously! Matched cohort study (target trial emulation) in elderly Scandinavian population from 2023-2024 season.
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Genome Research
about 1 year ago
The Long-read sequencing Special Issue is now LIVE! Guest-edited by
@ahoischen.bsky.social
,
@sedlazeck.bsky.social
, and
@anaconesa.bsky.social
.
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Eric Topol
about 1 year ago
A big day of output for the Human Cell Atlas, a global collaborative project with 100 countries to understand our ~37 trillion cells A Wikipedia of our cells, a "remarkable achievement"
nature.com/articles/d41...
nature.com/immersive/d4...
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Hilary Martin
about 1 year ago
My group's work dissecting the contribution of common variants to rare neurodevelopmental conditions is now out at
nature.com/articles/s41...
, led by co-first authors Qinqin Huang (not yet on blue sky) and
@emiliewigdor.bsky.social
. See below for Emilie's tweetorial.
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Altmetric
about 1 year ago
We strongly suggest that academic publishers and other platforms that host research rapidly implement a Share to Bluesky button for their articles. Here's how:
docs.bsky.app/docs/advance...
#AcademicSky
#HigherEd
#Altmetrics
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Action Intent Links | Bluesky
Authors, websites, and apps can use action intent links to implement "Share on Bluesky" buttons, or similar in-app actions. Logged-in users will be directed to the corresponding action view in the Blu...
https://docs.bsky.app/docs/advanced-guides/intent-links
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Alex Hoischen
about 1 year ago
The preliminary
#eshg25
program is online. Stellar line-up of invited speakers - full breadth of our amazing field. Grateful to a wonderful SPC @eshg that made this possible. See you all in Milan next year!
2025.eshg.org/programme-at...
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Programme at a Glance
Pre-conference courses Thursday, May 22, 2025 & Friday, May 23, 2025 - TBA Conference programme Saturday, May 24, 2025 08:30 - 10:00 Educational Sessions E01 E01 Single cell genomics and diseases W...
https://2025.eshg.org/programme-at-a-glance-local/
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Mike Inouye
about 1 year ago
Check out the new and fully GDPR compliant Helmholtz Munich genotype imputation server!
rdcu.be/d0h3y
Server webpage:
imputationserver.helmholtz-munich.de/index.html
(don't think Ele Zeggini has joined bluesky yet but this is basically a cross-post from her twitter)
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Genau das π. Jede:r Einzelne ein Held. GrΓΆΓter Respekt vor diesem Mut! Zeigen wir weiterhin, dass sie nicht allein sind πͺ.
#WirSindMehr
.
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almost 2 years ago
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Made it to the other side π₯³ - thanks #WomenInSTEM for the invite π©βπ¬. Trying to re-grow and extend my science-friend- community. Let's go ππͺ!
over 2 years ago
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