Davi Bock
@dddavi.bsky.social
📤 2060
📥 423
📝 289
rural neuroscientist caveat emptor:
https://bsky.app/profile/dddavi.bsky.social/post/3k5bnogiq5r2j
pinned post!
Hard to overstate how pleased I am that the FlyWire consortium converted our FAFB ("Full Adult Fly Brain") EM volume into a connectome, and that the resulting science has been (and will be) so impactful. Thanks to everyone involved.
#neuroscience
www.nature.com/immersive/d4...
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The FlyWire connectome: neuronal wiring diagram of a complete fly brain
Artificial intelligence and human expertise meet to generate a map of all the connections in the fly brain. The resource is already being used by experimentalists and theoreticians to further our unde...
https://www.nature.com/immersive/d42859-024-00053-4/index.html
12 months ago
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Davi Bock
Maria Paz Fernandez
3 days ago
Ed Kravitz passed away yesterday. He was a remarkable scientist and mentor- brilliant, curious, creative, and kind. I am grateful to have learned from him. His legacy will endure through his science and through the many people he inspired. We will miss you, Ed.
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Davi Bock
Dan Garisto
8 days ago
Per NSF staff, the solicitation was cleared in the system, and should have posted automatically on the next business day. So it is being manually held—there's not some kind of logistical issue. Unclear what the rationale for this is.
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Davi Bock
Grace Lindsay
10 days ago
I don't know that it works perfectly, but I have to say that the Asta search tool from
@ai2.bsky.social
is exactly what I want from an AI-powered research search tool for scientists: Describe a style of experiment or work and see if there are papers that have done that.
asta.allen.ai/chat
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Ai2 Asta
https://asta.allen.ai/chat
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Davi Bock
Ivan Radin
11 days ago
Do you know what happens when you touch a carnivorous sundew plant? If the touch is strong and large enough, a cytosolic calcium wave will spread from the site of touch throughout the whole plant, but if you only touch one tentacle (see post below), the calcium wave will be local and less intense.
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lovely whole-cell reconstructions of recorded cells using juxtacellular neurobiotin fill
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11 days ago
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Davi Bock
Piali Sengupta
12 days ago
Whoa - neuronal ciliary proteome! Tons to dig into here - different from kidney cilia proteome (perhaps unsurprising) and enriched for many postsynaptic proteins, strengthening previous suggestions of cilia as postsynaptic signaling structures.
@nachury.bsky.social
www.biorxiv.org/content/10.1...
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In situ Proteomics Unveils Specialized Domains for Extrasynaptic Signaling on Neuronal Cilia
Neuronal cilia have emerged as crucial signaling hubs, yet their molecular composition and integration with synaptic communication remain poorly understood. Using a newly developed Arl13b-TurboID mous...
https://www.biorxiv.org/content/10.1101/2025.09.10.675452v1
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Davi Bock
Gizem Özdil
13 days ago
🪰 How do dozens of tiny fly muscles cooperate to move a leg? We’re excited to share the first 3D, data-driven musculoskeletal model of Drosophila legs based on Hill-type muscles, running in OpenSim and MuJoCo simulation environments. Preprint:
arxiv.org/abs/2509.06426
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Horst Obenhaus
14 days ago
Come to the MBL in Woods Hole
@mblscience.bsky.social
for a GRASS FELLOWSHIP
@grassfoundation.bsky.social
🦑 🐙🐛 There are two application deadlines this year: Oct 15, 2025 (submit by then to receive feedback on your application!), and Dec 1, 2025 (final deadline).
grassfoundation.org/application-...
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Davi Bock
Dave Blake
17 days ago
Brain stimulation without causing tissue damage or electrode damage. The most common approach to stimulating CNS tissue without causing tissue damage is the "Shannon limit". Shannon, R.V., 2002. A model of safe levels for electrical stimulation. 1/
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A good read in the current moment (and evergreen). Peter Sterling is a pioneer of volume electron microscopy of neuronal circuits and was a Freedom Rider.
www.cell.com/current-biol...
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Why I joined the Freedom Rides
Peter Sterling expands upon his recent Q & A article by discussing his participation in the Freedom Rides and the reasons for his involvement in the civil rights movement.
https://www.cell.com/current-biology/fulltext/S0960-9822(21)00661-8
17 days ago
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Davi Bock
Kishore Kuchibhotla
22 days ago
🚨 We’re hiring a postdoc! 🚨 Excited for our new NiCE grant with
@lauerlab.bsky.social
@batwoman123.bsky.social
🎉We use a comparative approach, two-photon imaging & optogenetics to identify why bats🦇 and deer mice resist noise but lab mice don't. If you're interested, please DM or e-mail me!
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Davi Bock
Gaspar Jekely
25 days ago
We are looking for an IT engineer with a focus on operations and research data management at the Centre for Organismal Studies at @uniheidelberg in Heidelberg, Germany #IT #sysadmin #linux #ResearchData please help to spread this opening […]
[Original post on biologists.social]
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Davi Bock
Joel Lüthi
about 1 month ago
We're happy to announce the 2025 International OME-NGFF workshop 🎉 📅 Dates: - Symposium: Nov 10–11, 2025 - Hackathon: Nov 12–14, 2025 📍 Location: Zurich, Switzerland Full details & registration:
www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging
#openscience
#OMENGFF
#OMEZarr
(1/x 🧵)
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Davi Bock
Gaspar Jekely
29 days ago
At long last, the version of record of our paper on the
#platynereis
#connectome
"Whole-body connectome of a segmented annelid larva" is out. Explore the rich online presentation with all the videos, figures and source data here: https://doi.org/10.7554/eLife.97964
@eLife
@biology
[…]
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Original post on biologists.social
https://biologists.social/@jekely/115106381054174340
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Davi Bock
The Gold Lab
29 days ago
We are recruiting 2 postdocs to work on bacterial motility using a combination of cryoEM, FLM and MD. An exciting collaboration with Kirsty Wan
@micromotility.bsky.social
Wolfram Moebius
@wolframmoebius.bsky.social
and Daniel Kattnig. Please see links in the thread below!
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Davi Bock
Kyle Harrington
about 1 month ago
Better ML for cryo-ET starts with better benchmarks. We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge. The result: community models beat expert tools. Read more in the
@natmethods.nature.com
article that just came out: 🔗
doi.org/10.1038/s415...
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A realistic phantom dataset for benchmarking cryo-ET data annotation - Nature Methods
A standardized, realistic phantom dataset consisting of ground-truth annotations for six diverse molecular species is provided as a community resource for cryo-electron-tomography algorithm benchmarki...
https://doi.org/10.1038/s41592-025-02800-5
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You had me at "supergiant cannibals." 😱 Gotta love the world of ciliates. Good🧵⬇️
add a skeleton here at some point
about 1 month ago
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Davi Bock
Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦
about 1 month ago
The list of successfully fixed species keeps getting longer and longer. Can’t wait for the first
#UExM
images fresh out of our new scopes… Amazing job
@fmikus.bsky.social
and thanks
@pjkeelinglab.bsky.social
,
@fburki.bsky.social
, Denis, Vittorio and all for joining forces !
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Davi Bock
Erik A. Rodriguez
about 1 month ago
Today, I would like to honor the memory of Roger Y. Tsien, who died on August 24, 2016. His legacy lives with all who use his technologies, including calcium sensors, fluorescent proteins, the acetoxymethyl (AM) ester, & many more!
#FluorescenceFriday
www.nature.com/articles/nme...
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Davi Bock
Gautam Dey
about 1 month ago
Want to help us image and understand those incredible samples Felix just collected at UBC - and many more? 2 more days to apply!
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
#ExM
#PlanetaryCellBiology
🧪🧬🔬🌍🌱🦠
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Davi Bock
Greg Jefferis
about 1 month ago
Neuronal diversity is written in transcriptional codes 🧬. But what is the logic of these codes that define cell types and wiring patterns? To find out we built a
#scRNAseq
developmental atlas of the Drosophila nerve cord and linked it to the
#connectome
🪰🧠
#preprint
thread ⬇️1/8
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John Tuthill
about 1 month ago
agree w davi. we can operantly condition an adult fly to control a cursor with motor neuron firing rates (paper in prep), but a fly is not going to reach an equivalent level of dexterity with totally new effectors. might be more plastic if you could hook it up during metamorphosis.
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Over a decade after reading it, I think about this Neil Young profile at least 1-2x/mo. especially this quote.
www.nytimes.com/2012/09/23/m...
about 1 month ago
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It was a good experience to step back and briefly take stock of the amazing progress in connectomics since I started working on this stuff (20 years ago!) thanks as well to
@natrevneuro.nature.com
for the constructive editorial interactions.
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about 1 month ago
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Another example of autonomous activity of different branches/compartments of fly neuronal arbors -- "integrate and fire" is a pleasant approximation...
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about 1 month ago
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Davi Bock
Kirsty Wan
about 1 month ago
So you think you understand everything about
#Chlamydomonas
photoresponses? think again!
#protists
#behaviour
#cilia
To explain how Chlamy switches handedness from swimming in CCW circles in low-light to CW in high-light... see our new preprint led by Alan Tsang (HKU) 👇
doi.org/10.1101/2025...
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Davi Bock
Yamuna Krishnan
about 2 months ago
A big blow to All of Science, not just Harvard, not just the Fly community, not just Genetics. All of Science. Turbocharge was just switched off. Flies gave us so many insights.
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Davi Bock
Gautam Dey
about 2 months ago
Want to acquire
#ExM
images like this and help us understand the true extent of cytoskeletal diversity across the tree of life? This position might be for you!
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
With
@dudinlab.bsky.social
@embl.org
@biology-unige.bsky.social
@moorefound.bsky.social
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Davi Bock
Kirsty Wan
about 2 months ago
We have a postdoc opening for a protistologist with biophysics inclinations to join our
@hfspo.bsky.social
project! (focus will be on characterising the morphology, ultrastructure and behaviour of excavates)
#protistsonsky
Apply by Sept 17th (RTs appreciated!)
jobs.exeter.ac.uk/hrpr_webrecr...
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Good read.
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about 2 months ago
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Davi Bock
Allen Institute
2 months ago
Want to use the massive MICrONS dataset for your own research? We understand the challenges and we are here to support you. Submit your proposals for our Proofreading and Annotation program: Virtual Observatory of the Cortex (VORTEX) by August 15. microns-explorer.org/vortex
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Davi Bock
Wei-Chung Allen Lee
about 2 months ago
With
@megyounger.bsky.social
's lab, et al., we present the first connectomics work in the disease-vector mosquito Aedes aegypti, revealing how its brain is wired to detect host cues. Preprint:
doi.org/10.1101/2025...
#Neuroscience
#Connectomics
#vEM
#VectorBiology
🧪
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Davi Bock
Timothée Lionnet
about 2 months ago
... curious to see if this one weird trick to recoup tariffs on scientific equipment actually works! tl;dr the UN Florence agreement says that scientific equipment (under certain conditions) may enter free of duty
www.trade.gov/statutory-im...
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Davi Bock
Matt Collie
about 2 months ago
I think the "embodiment" of this connectome is going to be such a hit: For instance take the interactive "body part" maps on Codex, where you can simply click on your favorite external or visceral part and it will show you all of the neurons associated it!
codex.flywire.ai/app/body_par...
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Davi Bock
Meg Younger
about 2 months ago
New preprint from
@darbly.bsky.social
@briandepasquale.bsky.social
and my labs! If you love (or hate) mosquitoes, have a look:
doi.org/10.1101/2025...
We used TEM to describe the circuitry used for CO2 detection by mosquitoes. As usual with mosquitoes, nothing is as expected! 🌬️🦟
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Recurrent connectivity supports carbon dioxide sensitivity in Aedes aegypti mosquitoes
The mosquito Aedes aegypti′s human host-seeking behavior depends on the integration of multiple sensory cues. One of these cues, carbon dioxide (CO2), gates odorant and heat pathways and activates hos...
https://doi.org/10.1101/2025.07.29.667487
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Davi Bock
Steven Cook
about 2 months ago
Happy to share our publication - Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution
www.science.org/doi/10.1126/...
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Comparative connectomics of two distantly related nematode species reveals patterns of nervous system evolution
Understanding the evolution of the bilaterian brain requires a detailed exploration of the precise nature of cellular and subcellular differences between related species. We undertook an electron micr...
https://www.science.org/doi/10.1126/science.adx2143
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Davi Bock
Jan M. Ache
about 2 months ago
Preprint Alert! Walking mostly feels natural and easy to us - but the neuronal control of walking is actually incredibly complex. We leveraged the fruit fly as a genetically tractable animal model with a compact nervous system to ask how the brain controls walking direction:
tinyurl.com/flywalk
. 🧵..
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Davi Bock
Philip Hubbard
2 months ago
What does a neural network look like? Maybe like this view of Larissa Heinrich's U-net for organelle segmentation, with edges between layer inputs and outputs. Want to help build networks like this? Join
#HHMIJanelia's
new AI initiative as a data engineer:
hhmi.wd1.myworkdayjobs.com/en-US/Extern...
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Davi Bock
2 months ago
🧠 Excited by synapse-level brain mapping? Join us at a world-class institute to build molecular tools based on our new
#LICONN
work — and push the frontier of
#MolecularConnectomics
. Let’s decode the brain, one synapse at a time.
hhmi.wd1.myworkdayjobs.com/en-US/Extern...
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Research Specialist - Tavakoli Lab
Primary Work Address: 19700 Helix Drive, Ashburn, VA, 20147 Current HHMI Employees, click here to apply via your Workday account. The Howard Hughes Medical Institute’s Janelia Research Campus is a pio...
https://hhmi.wd1.myworkdayjobs.com/en-US/External/job/Janelia-Research-Campus/Research-Specialist---Tavakoli-Lab_R-3709?locationRegionStateProvince=e0889a76c58d4fff9b54b80dadc49000
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“The connectome shows that LT52 is anatomically positioned to inhibit the neural networks involved in steering toward a visual object in the environment. Thus, we suggest that LT52 functions to prevent the fly from steering toward its own leg.” nice 😁
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2 months ago
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Davi Bock
Gaspar Jekely
2 months ago
Happy to be involved in UNICIL, our new Wellcome Trust Discovery project coordinated by @micromotility.bsky.social We will study ciliary dynamics across scales and organisms. A long-term #postdoc position will be available at Heidelberg University […]
[Original post on biologists.social]
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Go Zhihao! 😄 High quality ultrastructure and imaging in this dataset. Well done.
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2 months ago
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Davi Bock
Zhihao Zheng
2 months ago
Excited to share a connectomics dataset of hippocampus CA3. Explore the dataset:
pyr.ai
Paper introducing the dataset and some of our discoveries:
www.biorxiv.org/content/10.1...
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Connectomic reconstruction from hippocampal CA3 reveals spatially graded mossy fiber inputs and selective feedforward inhibition to pyramidal cells
The mossy fiber (MF) connections to pyramidal cells in hippocampal CA3 are hypothesized to participate in pattern separation and memory encoding, yet no large–scale neuronal wiring diagram exists for ...
https://www.biorxiv.org/content/10.1101/2025.07.09.663979v1
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Davi Bock
Dan Garisto
3 months ago
During the subcommittee markup of the Commerce, Justice, Science, and Related Agencies, Sen. Jerry Moran (R-KS) announced that the bill contains 33.9 billion for science agencies (NASA & NSF) which would keep funding steady. ~8 min mark. Full meeting tomorrow.
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Subcommittee Markup of the Commerce, Justice, Science, and Related Agencies Appropriations Act | United States Senate Committee on Appropriations
United States Senate Committee on Appropriations
https://www.appropriations.senate.gov/hearings/subcommittee-markup-of-the-commerce-justice-science-and-related-agencies-appropriations-act
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keeping my eye on this Senate committee meeting tomorrow, which will AFAIK will be congress's first response to White House's proposed ~60% NSF budget cut:
www.appropriations.senate.gov/hearings/ful...
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Full Committee Markup of Commerce, Justice, Science; Agriculture, Rural Development, FDA; and Legislative Branch Appropriations Acts | United States Senate Committee on Appropriations
United States Senate Committee on Appropriations
https://www.appropriations.senate.gov/hearings/full-committee-markup-of-commerce-justice-science-agriculture-rural-development-fda-and-legislative-branch-appropriations-acts
3 months ago
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Davi Bock
CCP-volumeEM
3 months ago
🚨 SAVE THE DATE 🚨 Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at
@crick.ac.uk
in London "Towards a collaborative computational community for volume EM" Timings: 12pm - 5.30pm, followed by networking reception
#volumeEM
#BioImageAnalysis
#VEM
#CCPvolumeEM
#CoSeC
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Davi Bock
bioRxiv Neuroscience
3 months ago
A scalable, all-optical method for mapping synaptic connectivity with cell-type specificity
https://www.biorxiv.org/content/10.1101/2025.06.25.661552v1
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Davi Bock
Orit Peleg
3 months ago
Help us record firefly flashes! 👇🙏
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Davi Bock
Dan Garisto
3 months ago
NEW: NSF will be kicked out of their building. Announcement will be made tomorrow by HUD Sec. and Governor of VA. HUD will take over the NSF building over the next two years. NSF staffer: "There is no planning for NSF, no identified future location, appropriation for a new building or a move."
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