Jakob Troidl
@jakobtroidl.bsky.social
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📥 86
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ai scientist @janelia • @harvard cs phd • ml / data vis for neuro / connectomics
reposted by
Jakob Troidl
Adam Marblestone
about 1 month ago
zenodo.org/records/1969...
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How to obtain a complete human connectome at synaptic resolution within the next decade
https://zenodo.org/records/19697471
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Jakob Troidl
Konrad Kording
about 2 months ago
Preprint out arguing that we should build the techology to translate (compile) molecularly annotated connectomes into dynamics. I think this is incredibly important.
arxiv.org/abs/2603.25713
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Jakob Troidl
Janelia Conferences
3 months ago
📢 Applications are open! This meeting brings together scientists using data-driven
#AI
to analyze + model neural circuits and uncover how the brain performs complex computations. 🧠 Apply by May 28 ➡️
janelia.news/NAI26
@computingnature.bsky.social
@sinzlab.bsky.social
@srinituraga.bsky.social
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Data-Driven AI for Neuroscience
Organizers Carsen Stringer, HHMI/Janelia Research Campus Srini Turaga, HHMI/Janelia Research Campus Atika Syeda, HHMI/Janelia Research Campus Fabian Sinz, University of Göttingen Alice Wang,
https://janelia.news/NAI26
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Jakob Troidl
Ziv Epstein
2 months ago
Pleased to share our new paper forthcoming in
@icwsm.bsky.social
! We introduce a novel framework to measure value expressions in social media posts at scale, leveraging personalization to handle the inherent subjectivity of human values.
arxiv.org/abs/2511.08453
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Jakob Troidl
Virginie Uhlmann
2 months ago
Check out
@cfusterbarcelo.bsky.social
's latest cool work! Domain shift, we are watching you 👀👀👀
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Jakob Troidl
Cedric Allier
3 months ago
Graph neural networks recover interpretable circuit models from neural activity
saalfeldlab.github.io/flyvis-gnn/
@HHMIJanelia @AllenInstitute to be presented at @CosyneMeeting
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Jakob Troidl
Linda Ulmer
3 months ago
Looking forward to presenting our work on connectome-constrained modeling at
#cosyne2026
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Jakob Troidl
Konrad Kording
3 months ago
In two hours we (with gunnar blohm and jordan matelsky) will run a webinar talking about our philosophy for doing good science and becoming good at science. And the tool
planyourscience.com
I wrote to help. If you want to join us you can sign up here:t.co/OJOQe1Ly18
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Scientific Paper Planner - AI-Powered Research Planning
Structure your scientific research with AI-powered guidance. From hypothesis to methodology, plan your research paper with intelligent mentoring.
http://planyourscience.com
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Made it across the pond to Heidelberg for the AI & Biology conference at EMBL, then Lisbon for COSYNE. Looking forward to catching up with people and talking connectomics, AI for bio-image analysis, and more.
3 months ago
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Jakob Troidl
Jan Funke
3 months ago
We opened 4 PhD positions at
@humantechnopole.bsky.social
together with Polimi (see 👇). My lab offers a PhD project on "Computational Morphogenesis": use state-of-the-art machine learning methods together with realistic simulations to build digital twins of developing tissue. Apply by March 26.
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Jakob Troidl
Casey Schneider-Mizell
3 months ago
From
@bdpedigo.bsky.social
: a super efficient, highly reliable, and very generalizable method for mesh structure classification, applied here to spine detection across basically every synapse onto a cell in the MICRoNS dataset.
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Jakob Troidl
Stephan Saalfeld
3 months ago
Join us in building foundational datasets and models for microscopy with
@jakobtroidl.bsky.social
and many others AI Engineer Pre-Training:
lnkd.in/eyEEV5nm
AI Engineer Post-Training:
lnkd.in/eShVQ3y9
Data Engineer Data:
lnkd.in/eCvm58xH
Data Engineer Pipelines:
lnkd.in/ec6qGJkX
ai.hhmi.org
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Accelerating Innovation in Biology
HHMI’s $500 million over the next 10 years will support AI-driven projects and embed AI systems throughout the scientific process in labs across HHMI.
https://ai.hhmi.org/
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