Ian Henderson
@hendersi.bsky.social
📤 1886
📥 1732
📝 107
Plant genetics and epigenetics @ University of Cambridge, Department of Plant Sciences
reposted by
Ian Henderson
Tanmay Bharat
1 day ago
An Asgard archaeon with internal membrane compartments Brilliant study led by
@fmacleod.bsky.social
and Andriko von Kügelgen. Tight collaboration with
@buzzbaum.bsky.social
and lab. Congrats to all authors!
www.biorxiv.org/content/10.1...
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Ian Henderson
Julius Brennecke
1 day ago
Some impressions from the rather fabulous
#EMBOmobilegenome
Mobile Genome meeting in Heidelberg Morning walk through the woods, exciting panel discussion, flash talks, lab community, drosophila friends, …
@events.embl.org
The transposon community is going very strong. see you all again in 2027!!
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Ian Henderson
Patrick Pausch
2 days ago
After 5 years of waiting, the new
#CRISPR
classification by Makarova et al. is out
@natmicrobiol.nature.com
www.nature.com/articles/s41...
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An updated evolutionary classification of CRISPR–Cas systems including rare variants - Nature Microbiology
An exploration of previously undescribed variants from the long tail of the CRISPR–Cas distribution.
https://www.nature.com/articles/s41564-025-02180-8
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Ian Henderson
Jolyon Troscianko
2 days ago
BehaveAI is live! Our biologically inspired video analysis tool sees motion as colour. Track animals or objects, classify their behaviour, and handle complex natural scenes with ease. Semi-supervised annotation, no GPUs required, user-friendly, free & open source. Pre-print
tinyurl.com/BehaveAI
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Ian Henderson
Gregor Mendel Institute of Molecular Plant Biology
2 days ago
Magnus Nordborg of the GMI from the
@oeaw.bsky.social
has received a Synergy Grant from the
@erc.europa.eu
. With Richard Durbin and
@felipekteixeira.bsky.social
, they will investigate how transposable elements shape genome evolution in eukaryotes. Read more:
www.oeaw.ac.at/gmi/news-eve...
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Ian Henderson
Jake Harris
3 days ago
Very excited to share our work published in Nature Comms last week! Here we describe a range of cool things that can be done once you have the power to control deposition of H3K4me3…
rdcu.be/eNEf4
A short thread:
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CRISPR targeting of H3K4me3 activates gene expression and unlocks centromere-proximal crossover recombination in Arabidopsis
Nature Communications - Binenbaum et al. demonstrate that precise CRISPR-based targeting of a key chromatin mark (H3K4me3) can switch on genes, boost disease resistance, and unlock meiotic...
https://rdcu.be/eNEf4
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Ian Henderson
James Davies
3 days ago
Our latest paper has just been published in Cell!
doi.org/10.1016/j.ce...
We developed a new method called MCC ultra, which allows 3D chromatin structure to be visualised with a 1 base pair pixel size.
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Ian Henderson
Julius Brennecke
4 days ago
great to be at the
#EMBOMobileGenome
meeting in Heidelberg with a wonderful bunch of colleagues, speakers and attendees. this meeting is a good reflection of the excitement and collegiality in the transposon field. kindly sponsored by
@embo.org
add a skeleton here at some point
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‘Epigenetic serum’ makes you wonder !
6 days ago
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Ian Henderson
Svetlana Dodonova
11 days ago
Lab’s first paper is out!! We show the first structures of
#Asgard
#chromatin
by
#cryo-EM
🧬❄️ Asgard histones form closed and open hypernucleosomes. Closed are conserved across
#Archaea
, while open resemble eukaryotic H3–H4 octasomes and are Asgard-specific. More here:
www.cell.com/molecular-ce...
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Ian Henderson
Yasin Dagdas
11 days ago
Really cool work by the
@dodonova-sveta.bsky.social
lab
@embl.org
www.cell.com/molecular-ce...
#archea
#evochromo
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Cryo-EM reveals open and closed Asgard chromatin assemblies
Ranawat et al. show the cryo-EM structures of Asgard archaeal chromatin assemblies, revealing that the histone HHoB assembles into both compact closed and extended open hypernucleosomes. The closed co...
https://www.cell.com/molecular-cell/fulltext/S1097-2765(25)00818-4?rss=yes
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reposted by
Ian Henderson
Rob Klose
22 days ago
We are recuiting two new Associate Professors here in Oxford Biochemistry. Come join us! Reach out to me if you have any questions. Please repost!
tinyurl.com/mr3m7bd3
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Ian Henderson
Stephen Tang
22 days ago
Genome maintenance by telomerase is a fundamental process in nearly all eukaryotes. But where does it come from? Today, we report the discovery of telomerase homologs in a family of antiviral reverse transcriptases, revealing an unexpected evolutionary origin in bacteria.
doi.org/10.1101/2025...
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Ian Henderson
Sternberg Lab
22 days ago
1/10 Genome maintenance by telomerase is a fundamental process in nearly all eukaryotes. But where does it come from? Today, we report the discovery of telomerase homologs in a family of antiviral RTs, revealing an unexpected evolutionary origin in bacteria.
www.biorxiv.org/content/10.1...
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Antiviral reverse transcriptases reveal the evolutionary origin of telomerase
Defense-associated reverse transcriptases (DRTs) employ diverse and distinctive mechanisms of cDNA synthesis to protect bacteria against viral infection. However, much of DRT family diversity remains ...
https://www.biorxiv.org/content/10.1101/2025.10.16.682844v1
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Crazy red flesh apple - tastes good too! 🍎
27 days ago
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Ian Henderson
Maddy Seale
30 days ago
Out in
@science.org
this week: A new FRET sensor for salicylic acid gives insight into spatial dynamics of pathogen infection
www.science.org/doi/10.1126/...
(1/2)
#PlantScience
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SALICYLIC ACID SENSOR1 reveals the propagation of an SA hormone surge during plant pathogen advance
Salicylic acid (SA) is a key phytohormone that orchestrates immune responses against pathogens, including Pseudomonas syringae bacteria. The timing and extent of SA accumulation are tightly controlled...
https://www.science.org/doi/10.1126/science.adw7650
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Ian Henderson
PlantEvolution 🌱🌾
29 days ago
Congrats, Joe Ecker
@salkinstitute.bsky.social
, to receiving the McClintock Prize! Joe has been a visionary leader of the field of genetics and genomics – not only for plants – for decades
www.salk.edu/news-release...
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Ian Henderson
Guillaume Bourque
about 1 month ago
🚨 New paper alert on telomeres! 🚨 Something different from the group! Thanks to Yuxin, a talented student in the lab, we used long-reads in 75 human trios to study telomeres and their inheritance.
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Ian Henderson
Carolyn Bertozzi
about 1 month ago
My HPLC was definitely overlooked
www.nature.com/articles/d41...
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Prizes must recognize machine contributions to discovery
The future of science will be written by humans and machines together. Awards should reflect that reality.
https://www.nature.com/articles/d41586-025-03217-y
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Ian Henderson
Jstheater
about 1 month ago
Heading in the correct direction: After success of pilot, Ireland expands basic support payments for artists, making them permanent:
www.irishtimes.com/politics/202...
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Basic income support scheme for artists to be made permanent and opened to new entrants in budget
Negotiations down to the wire, with five big-spending departments yet to agree their budget allocations
https://www.irishtimes.com/politics/2025/10/06/budget-2026-states-basic-income-scheme-for-artists-made-permanent/
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Ian Henderson
bioRxiv Evolutionary Biology
about 1 month ago
Genomic Islands in Wolbachia Prophages Drive Amplification andDiversification of Cytoplasmic Incompatibility Genes in Culex pipiens
https://www.biorxiv.org/content/10.1101/2025.10.03.680192v1
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Ian Henderson
Ana Ignatieva
about 1 month ago
Delighted that our paper about the distribution of genomic spans of clades/edges in genealogies (ARGs), and using this for detecting inversions and other SVs (and other phenomena that cause local disruption of recombination) is out in MBE
academic.oup.com/mbe/article/...
(1/n)
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The Length of Haplotype Blocks and Signals of Structural Variation in Reconstructed Genealogies
Abstract. Recent breakthroughs have enabled the accurate inference of large-scale genealogies. Through modelling the impact of recombination on the correla
https://academic.oup.com/mbe/article/42/9/msaf190/8223473
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Russell R. Geiger Professorship of Crop Science
www.cam.ac.uk/jobs/russell...
@cam.ac.uk
@camplantsci.bsky.social
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Russell R. Geiger Professorship of Crop Science
The Board of Electors to the Russell R. Geiger Professorship of Crop Science invite applications for this Professorship from persons whose work falls within the general field of the Professorship to
https://www.cam.ac.uk/jobs/russell-r-geiger-professorship-of-crop-science-pd47445
about 1 month ago
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CDCA7 facilitates MET1-mediated CG DNA methylation maintenance in centromeric heterochromatin via histone H1
www.biorxiv.org/content/10.1...
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https://www.biorxiv.org/content/10.1101/2025.09.22.677529v1.full.pdf
about 1 month ago
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Ian Henderson
Adam Phillippy
about 2 months ago
🚂 The T2T train keeps rolling: "The formation and propagation of human Robertsonian chromosomes" with Gerton and Garrison labs is out! What's a Robertsonian chromosome? Let Jen tell you herself in this great video, or read our paper: [1/3] 📺
youtu.be/JmlY5omxQVc
📄
www.nature.com/articles/s41...
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How Stowers Scientists Found the DNA Site Where Robertsonian Chromosomes Fuse
YouTube video by Stowers Institute for Medical Research
https://youtu.be/JmlY5omxQVc
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Ian Henderson
Maddy Seale
about 2 months ago
Out First Release in
@science.org
this week: A large scale analysis of the epigenetics of transposable elements in Arabidopsis shows transgenerational stability
www.science.org/doi/10.1126/...
#PlantScience
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Transposable elements are vectors of recurrent transgenerational epigenetic inheritance
DNA methylation loss at transposable elements (TEs) can affect neighboring genes and be epigenetically inherited in plants, yet the determinants and significance of this additional system of inheritan...
https://www.science.org/doi/10.1126/science.ady3475
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Excellent work from
@piotraz.bsky.social
group demonstrating juxtaposition of heterozygous & homozygous regions in maize attracts meiotic recombination to het regions
rdcu.be/eHmn9
@natplants.nature.com
builds from work we did together in Cambridge on Arabidopsis way back in 2015. Great stuff Piotr!
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Enhancing local meiotic crossovers in Arabidopsis and maize through juxtaposition of heterozygous and homozygous regions
Nature Plants - This study discovered that locally confined DNA differences boost crossover rates in both Arabidopsis and maize, revealing a conserved mechanism that can accelerate plant breeding...
https://rdcu.be/eHmn9
about 2 months ago
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Ian Henderson
Oxford Biology
about 2 months ago
Oxford Biology is growing 📢 We’re appointing 3 Associate Professors in: 🌱 Plant Sciences 🦉 Animal Behaviour 🔬 Molecular Cell Biology 3 fields. 3 opportunities. One new home for Oxford Biology. Learn more 👉
bit.ly/41S2Tc7
Apply now 👉
bit.ly/488CNW3
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reposted by
Ian Henderson
2 months ago
#1 Centromeres are epigenetic loci defined by CENP-A, positioned in unmethylated DNA flanked by highly methylated regions. Our work, published in
@natgenet.nature.com
in collaboration with
@naltemose.bsky.social
investigates the role of DNAme at human centromeres
www.nature.com/articles/s41...
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DNA methylation influences human centromere positioning and function - Nature Genetics
Genome-wide and targeted perturbation of DNA methylation at centromeres affects CENP-A positioning and centromere structure, resulting in aneuploidy and reduced cell viability.
https://www.nature.com/articles/s41588-025-02324-w
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Ian Henderson
EPIGENETIC HULK
2 months ago
IT BEST HEALTH! FOR SKIN! MAYBE ELAINE FUCHS INVOLVED! NEED CELLULAR EPIGENETICS FOR EVERYTHING PLEASE!
add a skeleton here at some point
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Some nice pyrite-ammonites we found on Charmouth beach
#fossilhunting
2 months ago
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reposted by
Ian Henderson
Schnittger Lab
3 months ago
Six more years—plus a lot of blood, sweat, and tears—later, we are thrilled to finally share it: a cytological framework of female meiosis in Arabidopsis!
www.biorxiv.org/content/10.1...
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A cytological framework of female meiosis in Arabidopsis
Female and male meiosis often differ in many aspects, such as their duration and the frequency as well as the positioning of crossovers. However, studying female meiosis is often very challenging and ...
https://www.biorxiv.org/content/10.1101/2025.08.22.671760v1
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Ian Henderson
Kumud Saini
3 months ago
What beauty!
add a skeleton here at some point
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Ian Henderson
Justin Blumenstiel
3 months ago
The original circos plot? From the 1947-1948 Carnegie Yearbook, the page prior to McClintock's Mutable Loci in Maize paper.
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Ian Henderson
PlantEvolution 🌱🌾
3 months ago
Out after peer review now, follow up from our 2019 pna-NLRome paper (which was based on enrichment and long-read sequencing). It is remarkable how much more can be learned with complete genome sequences. Next. pan-NLRome from hundreds of A. thaliana long-read genomes! Big thanks to the entire team!
add a skeleton here at some point
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Ian Henderson
Nick Desnoyer
3 months ago
Introducing the 1,000 Flower Collection 🧬🌹 I’m creating 1,000 genetically designed flowers each crafted with new colors, patterns, and shapes. Here’s how I’m making it happen… and how you can join me on this journey 🧵(1/7)
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Oatk: a de novo assembly tool for complex plant organelle genomes
link.springer.com/article/10.1...
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Oatk: a de novo assembly tool for complex plant organelle genomes - Genome Biology
Plant organelle genomes, particularly large mitochondrial genomes with complex repeats, present significant challenges for assembly. The advent of long-read sequencing enables the assembly of complete...
https://link.springer.com/article/10.1186/s13059-025-03676-6
3 months ago
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Ian Henderson
Javier Santoyo
3 months ago
Hi-reComb: constructing recombination maps from bulk gamete Hi-C sequencing.
#HiC
#RecombinationMaps
#GameteSequencing
#Genomics
#Genetics
academic.oup.com/genetics/adv...
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Ian Henderson
Genetics Society UK
3 months ago
Are you passionate about
#genetics
and
#communication
? We're looking for an Editor for our magazine. Training funds are available, you will be a trustee of the society and get free attendance to all of our conferences. Application deadline: 12 September!
genetics.org.uk/committee-va...
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5 August 2025 - Committee vacancy, Magazine Editor | Genetics Society
We are searching for a new Editor of the Genetics Society magazine! Check our vacancies page for details on the role and how to apply.
https://genetics.org.uk/committee-vacancy-magazine-editor/
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Ian Henderson
Robert Arkowitz
3 months ago
Escherichia coli with a 57-codon genetic code | Science
www.science.org/doi/10.1126/...
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Escherichia coli with a 57-codon genetic code
The near-universal genetic code uses 64 codons to encode the 20 canonical amino acids and protein synthesis. Here we designed and generated Escherichia coli with a 4 Mb synthetic genome in which we re...
https://www.science.org/doi/10.1126/science.ady4368?utm_source=sfmc&utm_medium=email&utm_content=alert&utm_campaign=1stRelease&et_rid=17154784&et_cid=5690638
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Spindle checkpoint can secure additional cheating time for selfish expanded centromeres
cell.com/current-biol...
@currentbiology.bsky.social
@takashiakeralab.bsky.social
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Spindle checkpoint can secure additional cheating time for selfish expanded centromeres
Expanded centromere DNA repeats violate Mendel’s law of segregation by preferentially segregating to the egg in animals and plants. Using oocytes collected from hybrid mice, Walton et al. show that th...
https://cell.com/current-biology/abstract/S0960-9822(25)00813-9?dgcid=raven_jbs_etoc_email
3 months ago
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Ian Henderson
katja heuer
3 months ago
1 To predict the behaviour of a primate, would you rather base your guess on a closely related species or one with a similar brain shape? We looked at brains & behaviours of 70 species, you’ll be surprised! 🧵Thread on our new preprint with
@r3rt0.bsky.social
,
doi.org/10.1101/2025...
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New studious lab pic just dropped ! A few others to be digitally added in due course!
3 months ago
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reposted by
Ian Henderson
Julius Brennecke
3 months ago
last call! submit your abstract by tonight to be selected for one of the many oral presentations at the leading European Transposon Meeting. We are very much looking forward to your contribution and attendance!
add a skeleton here at some point
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Annual 307 laboratory day on the river!
3 months ago
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Ian Henderson
André Marques
3 months ago
Happy to share our new work with exciting findings, incl. different centromere organisations and all kinds of weird polyploids giving rise to the mysterious carnivorous sundews! Great word led by my postdoc Laura in collaboration with
@plantgenomes.bsky.social
www.biorxiv.org/content/10.1...
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Contrasting centromere structures in carnivorous sundews uncover a dynamic evolutionary trajectory shaped by polyploidy and chromosomal remodeling
Sundews (Drosera) are carnivorous plants that capture prey using mucilage-producing glands with both secretory and absorptive functions. Within a remarkably diverse clade that includes the Venus flytr...
https://www.biorxiv.org/content/10.1101/2025.07.27.666937v1
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Ian Henderson
Josje Romeijn
5 months ago
The first paper of my PhD is now available as a preprint! 🎉 Transposable elements (TEs) don't just jump within fungal genomes, they also move extensively between species. In this study, we screened over 1,300 fungal genomes and found a conservative estimate of 5,500+ horizontal transfer events.
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https://www.biorxiv.org/content/10.1101/2025.06.16.659975v1
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Ian Henderson
Saioa Manzano-Morales
4 months ago
Today is Asgard Friday! So happy that the project that has taken a big chunk of my PhD journey is out as a preprint (for now!) “Phylogenomics of Asgard archaea reveals a unique blend of prokaryotic-like horizontal transfer and eukaryotic-like gene duplication”
www.biorxiv.org/content/10.1...
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Phylogenomics of Asgard archaea reveals a unique blend of prokaryotic-like horizontal transfer and eukaryotic-like gene duplication.
Asgard archaea hold a pivotal position in the tree of life as the closest known relatives to eukaryotes and are therefore crucial for understanding eukaryogenesis. Earlier genomic analyses revealed th...
https://www.biorxiv.org/content/10.1101/2025.07.24.666526v1
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Ian Henderson
Simon Fisher
4 months ago
Telomere-to-telomere DNA sequencing is set to transform the field of human genetics in coming years. For a flavour of what's coming, see this exciting work on nearly complete genomes of 65 individuals from diverse populations, out today in
@nature.com
by
@glennislogsdon.bsky.social
& colleagues. 👇🧬🧪
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Complex genetic variation in nearly complete human genomes - Nature
Using sequencing and haplotype-resolved assembly of 65 diverse human genomes, complex regions including the major histocompatibility complex and centromeres are analysed.
https://www.nature.com/articles/s41586-025-09140-6
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Ian Henderson
Alexis Verger 🧬🧫🧪
4 months ago
How it started / How it's going 😱 (
www.biorxiv.org/content/10.1...
/
www.nature.com/articles/s41...
)
#preprint
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