The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!

👏🏆 @emiglietta.bsky.social reports finding the golden egg in Doom for ImageJ, illustrating bioimage analysts' perseverance in navigating the maze of bioimage tools. Well done!

Roughly two weeks (until May 15th) left to apply and join our team! Bioimage Analyst: careers.humantechnopole.it/job/Bioimage... Rsearch Software Engineer: careers.humantechnopole.it/job/Research...

We are still accepting applications for an image analyst within the Optical Imaging Core at Van Andel Institute. If you know anyone that is looking for a career in image analysis, please encourage them to apply! vai.wd1.myworkdayjobs.com/en-US/VAICar...

The ImageJ status bar was a little bit sad, as it didn't have its own game. Fixed by this 1D javascript space invaders ! See forum.image.sc/t/an-imagej-...

#HappyMicroscopyMonday #microscopycommunity- Wayne S. Rasband Open Source Imaging Award recognizes individuals advancing open source imaging software or hardware by making tools freely accessible, modifiable, and impactful. Nominate or apply by May 1, 2026! buff.ly/5DYr7UO

🔬 Huge Update: OpenFlexure v3.0.0-alpha5 is live! This release brings us significantly closer to a stable beta. Highlights: ✅ UI migrated to Vue3 ✅ New ScanWorkflows ✅ Continuous "jogging" movement ✅ Smaller SD image size Full details & code: 🔗 gitlab.com/openflexure/...

Our Fast & Curious Tour visited Kinston, NC, where 310 Foldscope 2.0s were distributed to teachers to use with their students! 🙌 📌 APPLY FOR THE TOUR! forms.gle/mg8XdQQQyJXX... Even if you are not in the DC, MD, or VA area, we HIGHLY encourage you to apply if you are located in the United States!

@mycroscopy.bsky.social congrats!

🚨 We are hiring! Personally, I think this is a fantastic job, good salary, and fun work place with exceptional colleagues. ⚠️ Warning, I’m quite biased… but still right! 😜 Join us! Apply!!! 🎉 careers.humantechnopole.it/job/AI-Exper...

Journées du GT imagerie des organismes photosynthétiques du GDR ImaBio à Angers. Merci à nos sponsors !! @gdrimabio.bsky.social @zeiss-microscopy.bsky.social et @leicamicrosystems.bsky.social

A must watch smart microscopy talk! 🙏🤩

#ImageOfTheMonth March 2026 Dividing Arabidopsis epidermal cells imaged by confocal microscopy after expansion. Microtubules guided cell plate formation revealed in 3D with depth-code. Image: Magali Grison @lbm-bordeaux.bsky.social @gtexm.bsky.social #Microscopy #PlantScience #CellBiology

If your imaging system has poorly characterized constant distortions leading to chromatic aberration, shoddy stitching, or false measurements (the answer is likely yes), you may want to give this tool a try. Native installers for Linux, Mac, Win under Releases github.com/saalfeldlab/...

New preprint alert! We developed an automated framework to optimize tracking pipelines for bacteria, along with a nice integration of tools for bacteria imaging, in the recently released TrackMate 8 (Fiji plugin). www.biorxiv.org/content/10.6... 👇🧵

1/ 🚀🧪🤖 Big update for #Omega — the LLM-powered autonomous agent for bioimage analysis in @napari.org ! Custom LLM endpoints, layer actions, plugin extensibility, agentic widget maker, modernized UI, & 30+ fixes. Here's what's new in version *2026.2.8.2*:

AMAZING JOB OPPORTUNITY ALERT!!! @calm-stp.bsky.social is hiring a Data & Systems Steward! 🧬 🔹Manage #bioimage data & #OMERO admin 🔹Automate via #Python/#Bash 🔹Support #FAIR principles 🔹Work closely with @crick-ia-team.bsky.social ⏰ Deadline: 08 Feb 2026 Apply: www.crick.ac.uk/careers-stud...

Curious about Advanced fluorescence imaging techniques? 🔬 Check out this course organised in collaboration with @embl.org Node experts, taking place at EMBL Heidelberg from May 17-22. 🗓️ Apply by February 8 🔽 www.embl.org/about/info/c...

Tune in on 23. jan to hear about our work on smart microscopy:

📯👨‍🚀 Calling all #bioimage analysis aficionados. #EZInput is out! We wanted to bring #ImageJ’s capacity to record settings to the #Python ecosystem 🐍. It is a declarative library for generating UIs that just work. Done with @guijacquemet.bsky.social lab arxiv.org/abs/2601.08859 #ScientificComputing

The new version of TrackMate, the v8.1 has just been released. It builds upon the recent v8, linked below, and offers two main improvements 👇

Interested in Zebrafish brain imaging? We released a 3D printed mold that's is super helpful for us. Check it out Customizable FDM-based zebrafish embryo mold for live imaging www.biorxiv.org/content/10.1... Work by Marcela and Jaakko in the lab

Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones. If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.

Great visibility for #microscopy images from @france-bioimaging.bsky.social platform Montpellier Ressources Imagerie at European Researcher's Night!

Thrilled to share that our article in @jofmicroscopy.bsky.social is now accessible online and as open access! If you wonder how to start the analysis of your images, we propose a decision tree to help identify suitable methods. Just follow the link(s)... #imageanalysis #bioimaging

Biscuits, someone has left oil on the 10x again… Myself

B y the means of Telescopes, there is nothing so far distant but may be represented to our view; and by the help of Microscopes, there is nothing so small, as to escape our enquiry. Robert Hooke

We see past time in a telescope and present time in a microscope. Hence the apparent enormities of the present. Victor Hugo

Reply with cool microscopy quotes, Jules Girard, 1877, "les plantes étudiées au microscope"

A few months ago @eurobioimaging.bsky.social organized the 'Image Data Community Days 2025' during which I could present our work within @france-bioimaging.bsky.social, creating a nationwide, remotely operating core facility for Bioimage Analysis. youtu.be/xtLHiio8RF0?...

I just published a new video demonstrating how to use Pixi and Napari-Easy-Augment-Batch-DL for repeatable and reproducible deep learning segmentation. In this example, I use Pixi to set up a Python environment then launch Napari to explore and compare Cellpose3 and Micro-SAM. youtu.be/3ObAnSTBri8

Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into 🧵 for a couple quick highlights (1/x):

VACANCY - We’re seeking an Optical Microscopy Support Specialist to join our Bioimaging Platform, to help train users on light microscopes, collaborate on imaging projects and provide technical support. www.jic.ac.uk/vacancies/op... Closing date - 11 August 2025 Contract - Full time, indefinite

Our paper describing the creation of a nationwide core facility for bioimage analysis if out in @plos Computational Biology! 🎉✌️ journals.plos.org/ploscompbiol... So happy about this paper and how the work turned out. A small thread 👇 #bioimageanalysis #corefacility

BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...

The FIRST GloBIAS conference is happening in Kobe, Japan, and we launched the webpage and the registration form. Training school, Hackathon, Taggathon, and Symposium with talks, posters, open-source software lounge, call-4-help on stage! #BioimageAnalysis #GloBIAS

GloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage www.globias.org/activities/b... for more information and the link to the registration form.

I tricked ChatGPT into helping me create an #ImageJ macro language extension to create/process data in the XML format. It's available here for anyone to use: github.com/mutterer/XML...

Thank you @gerbi-gmb.de for a wonderful week 💚🔬!

2 - New support for NGFF images (OME-Zarr, N5, remote or local) The support for tracking remote images have been completely reworked, based on the N5-universe codebase by @herrsaalfeld.bsky.social lab, with a custom caching strategy.

New Year, new job? Delighted to announce two early-career-level (post-BA/BS or MA) positions in my lab, and an open call for computational postdocs at the Broad! First, an image analysis associate - work on high content screens for all kinds of cells and dimensionalities! See more at link (1/4)

🌟We are looking for a new member of our image analysis team at the Imaging Core Facility of the Biozentrum in Basel 🌟 Are you passionate about science and technology? Are you interested in bioimaging? Please check the job ad below #JobOpportunity #ImageAnalysis #DeepLearning @biozentrum.bsky.social

Anticipated flood of data of 1.16Gb per day!

My first post here to share the important fact that turtle shells can be used to create a wonderful digit font.