Thrilled to share that our article in @jofmicroscopy.bsky.social is now accessible online and as open access! If you wonder how to start the analysis of your images, we propose a decision tree to help identify suitable methods. Just follow the link(s)... #imageanalysis #bioimaging

Biscuits, someone has left oil on the 10x again… Myself

B y the means of Telescopes, there is nothing so far distant but may be represented to our view; and by the help of Microscopes, there is nothing so small, as to escape our enquiry. Robert Hooke

We see past time in a telescope and present time in a microscope. Hence the apparent enormities of the present. Victor Hugo

Reply with cool microscopy quotes, Jules Girard, 1877, "les plantes étudiées au microscope"

A few months ago @eurobioimaging.bsky.social organized the 'Image Data Community Days 2025' during which I could present our work within @france-bioimaging.bsky.social, creating a nationwide, remotely operating core facility for Bioimage Analysis. youtu.be/xtLHiio8RF0?...

I just published a new video demonstrating how to use Pixi and Napari-Easy-Augment-Batch-DL for repeatable and reproducible deep learning segmentation. In this example, I use Pixi to set up a Python environment then launch Napari to explore and compare Cellpose3 and Micro-SAM. youtu.be/3ObAnSTBri8

Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into 🧵 for a couple quick highlights (1/x):

VACANCY - We’re seeking an Optical Microscopy Support Specialist to join our Bioimaging Platform, to help train users on light microscopes, collaborate on imaging projects and provide technical support. www.jic.ac.uk/vacancies/op... Closing date - 11 August 2025 Contract - Full time, indefinite

Our paper describing the creation of a nationwide core facility for bioimage analysis if out in @plos Computational Biology! 🎉✌️ journals.plos.org/ploscompbiol... So happy about this paper and how the work turned out. A small thread 👇 #bioimageanalysis #corefacility

BIG NEWS - for the first time ever, we're running a Bioimage Analysis Beginnings Bootcamp. Learn #bioimageanalysis from awesome folks, and gain familiarity with some new tools as well as how to pick the right tool in the first place. Aug 4th-8th - apply here (soon!) forms.gle/d2fCXsrWHVP8...

The FIRST GloBIAS conference is happening in Kobe, Japan, and we launched the webpage and the registration form. Training school, Hackathon, Taggathon, and Symposium with talks, posters, open-source software lounge, call-4-help on stage! #BioimageAnalysis #GloBIAS

GloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage www.globias.org/activities/b... for more information and the link to the registration form.

I tricked ChatGPT into helping me create an #ImageJ macro language extension to create/process data in the XML format. It's available here for anyone to use: github.com/mutterer/XML...

Thank you @gerbi-gmb.de for a wonderful week 💚🔬!

2 - New support for NGFF images (OME-Zarr, N5, remote or local) The support for tracking remote images have been completely reworked, based on the N5-universe codebase by @herrsaalfeld.bsky.social lab, with a custom caching strategy.

New Year, new job? Delighted to announce two early-career-level (post-BA/BS or MA) positions in my lab, and an open call for computational postdocs at the Broad! First, an image analysis associate - work on high content screens for all kinds of cells and dimensionalities! See more at link (1/4)

🌟We are looking for a new member of our image analysis team at the Imaging Core Facility of the Biozentrum in Basel 🌟 Are you passionate about science and technology? Are you interested in bioimaging? Please check the job ad below #JobOpportunity #ImageAnalysis #DeepLearning @biozentrum.bsky.social

Anticipated flood of data of 1.16Gb per day!

My first post here to share the important fact that turtle shells can be used to create a wonderful digit font.