BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...

We uncover that the caudal splanchnic mesoderm (in green) acts as a midline anchor of the heart tube. In Vangl2 and Shroom3 mutants, its bilateral symmetry is disrupted, leading to a rotation of the heart tube and ventricle malposition.

New publication : Despite being a core member of the PCP pathway, Vangl2 can play roles unrelated to planar polarity. This is the case during mouse heart morphogenesis.

#ResultatScientifique🔎| Des scientifiques combinent biologie et modélisation mathématique pour révéler comment l’organe olfactif se forme chez l’embryon de poisson zèbre 🐟 ✍️ Julie Batut 📕 @cp-iscience.bsky.social | buff.ly/iO4GqPA

#HappyFluorescenceFriday! #microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications! Learn more & sign up: buff.ly/esGIotD

Do you want to listen to me ramble about Pasteur's Image Analysis Hub (research.pasteur.fr/en/team/imag...)? Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.

Communiqué de presse : financement de la recherche publique : la communauté scientifique alerte sur un système à bout de souffle. #veilleESR, @info.gouv.fr @agencerecherche.bsky.social @cnrs.fr @franceuniversites.bsky.social @inserm.fr @inrae-france.bsky.social @enseignementsup-recherche.gouv.fr

🔬💡 Quel avenir pour la recherche publique en France ? Le Collège des sociétés savantes académiques de France publie les résultats d’une vaste enquête nationale sur le financement de la recherche publique 📢 Le communiqué de presse est disponible dès aujourd’hui: https://loom.ly/dcbzB3o

Next #GloBIAS seminar is coming up: join us on 22nd of September, 4 pm CEST to hear from Jean-Yves Tinevez about: The scientific added value of a core-facility dedicated to Bioimage Analysis services. Want to register? -> www.globias.org/activities/b...

Despite their high rigidity, microtubules (MTs) dynamically bend and buckle in cells. MT-self repair is inherent to their metastable nature, but it remains unclear whether just inherent repair mechanisms are sufficient to maintain MT integrity🧵 (1/9) www.biorxiv.org/content/10.1...

(1/14) I’m happy and proud to introduce: SpinePy – a framework to detect the "spine" of gastruloids and measure biological and physical signals in a local dynamic 3D coordinate system. www.biorxiv.org/content/10.1...

We (with @nicolasdray.bsky.social @zenlabpasteur.bsky.social) are happy to release officially FishFeats, our #napari plugin to streamline 3D smFish/RNA quantification! 🎊 Available here: github.com/gletort/Fish... user documentation: gletort.github.io/FishFeats/

Il y a moins de 3 ans, personne n'utilisait ChatGPT. Aujourd'hui, c'est semble-t-il devenu indispensable pour des millions de Français. Mais à quel prix ? Consommation d'électricité, consommation d'eau, extraction de matières premières... l'intelligence artificielle est un gouffre énergétique.

Three-Year Funded Postdoctoral Position to study organelle architecture in mammalian oocytes – Terret-Verlhac Lab, CIRB, Collège de France (Starting 2026). For more information, please contact: [email protected]

The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs. www.crick.ac.uk/whats-on/cri...

As hinted earlier, the biggest change in #PoCA to date: support for 2D/3D image data! 🧩🖼️ In fine, point clouds will be no longer the only game in town—PoCA is evolving into a more general spatial analysis platform. This (maybe too long) movie shows what's coming!

@cnrsecologie.bsky.social regrette profondément l'adoption de cette loi à la vision court-termiste & ses conséquences graves sur l’environnement, qui méprise santé & bien-être de la population & le rôle des espèces sauvages dans la prod. agricole. La communauté scientifique n'a pas été entendue.

Engineer position, 12 months starting Oct. 1st, 2025, to study the role of NOTCH3 in human iPSC-derived neurogenesis models. Solid previous expertise required in cell culture, notably iPSCs, and organoid generation. Send CV, motivation letter and reference letter(s) to [email protected]

Le gouvernement Macron a voté, avec la droite et l’extrême-droite, POUR la loi Duplomb à l’Assemblée nationale. Au gouvernement Macron, vous êtes la honte du pays.

Registration is now open! Gastrulation Reloaded: Developing, engineering & evolving the body plan 📅 October 14–17, 2025 📍 Paris, France 🗓️ Abstract & early bird deadline: July 15, 2025 www.gastrulation-reloaded.conferences-pasteur.org/home Exceptional lineup of speakers & many selected talks

[PUBLI] Everything you need to know about F-BIAS F-BIAS brings together analysts across France to strengthen their expertise, foster collaboration & provide image analysis support for the scientists. F-BIAS offers: ➡️ Remote consultations ➡️ Collaborative projects Read our article 👉 bit.ly/3GuJDd5

Join me and a panel of ocean science and conservation experts as we watch the new David Attenborough Ocean movie and post thoughts in real time! 8:30 P.M. eastern on 6/26, use #OceanChat I'll make a starter pack of participating experts, and I'll repost anyone sharing on the hashtag 🧪🦑🌎

Our paper describing the creation of a nationwide core facility for bioimage analysis if out in @plos Computational Biology! 🎉✌️ journals.plos.org/ploscompbiol... So happy about this paper and how the work turned out. A small thread 👇 #bioimageanalysis #corefacility

Des individus se sont introduits dans l’immeuble de Claire Nouvian, la fondatrice de l’ONG de protection Bloom, dans la nuit du mardi 3 au mercredi 4 juin et ont aspergé la porte de son appartement de peinture noire. Lire l'article ➡️ https://l.reporterre.net/7OC

What do we see when looking at cells under the microscope? 👉Some are bigger than others, some are elongated and align with the neighbors & others seem to move. Cool, right? But wouldn't it be cooler to quantify these observations? I'm @juliaeckert.bsky.social. Let's explore some analysis software!‬

The effector caspases drive cell death, but their activation can often be survived, so how do cells make this decision? Our new preprint from @levayerr.bsky.social shows that instantaneous caspase activity is important, but past activation has a key role to play! www.biorxiv.org/content/10.1...

Next #GloBIAS seminar coming up. Curtis Rueden will present on 'Fiji with Python power'. To get the link please register here: www.globias.org/activities/b...

4th day on the go for #neubiaspasteur2025 with a @biapyx.bsky.social practical course by @jwpylvanainen.bsky.social and a #cellpose #dask and RNA2Seg (doi.org/10.1101/2025...) course with @gaellel.bsky.social and Alice Blondel

A universal AI-powered pipeline enables precise 3D analysis of cell morphology and topology within organoid structures. www.nature.com/articles/s41...

Introducing warpfield, an open source Python library for GPU-accelerated non-rigid 3D registration. Warps and aligns gigavoxel volumes within seconds (not hours). For 3D microscopy, region-to-region and cell-to-cell matching. A collaboration with @mh123.bsky.social 🚀 github.com/danionella/w...

Day 3 for the ECI track at #neubiaspasteur2025! Photo: Thierry Pécot introducing the wonders of #QuPath to very attentive students

Thank you #neubiaspasteur2025 for the great energy! My slides on AI-based bioimage analysis pipelines (and SAMJ!) are now up on Zenodo. I hope you took away something new! 💡 🔗 zenodo.org/records/1539...

"Women are PIs on 58% of the canceled grants, although they are PIs on only 34% of all active NSF grants. Similarly, Blacks are PIs on 17% of the terminated grants, although they make only 4% of the total pool. Hispanic PIs and those with disabilities were twice as likely to lose a grant."

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💻 Position 2: Engineering & HPC-Oriented (Multiscale Modelling) The tasks include: ⚡ Applying parallel & distributed computing expertise to agent-based simulations. 🛠️ Leveraging CAD tools & GUIs for simulation setup. 🔧 Developing physically-sound agent-based functions for tissue simulation. 👇

📢 Exciting news! We will soon open two PhD positions at @i2sysbio.bsky.social @csic.es, in research projects in collaboration with the @bsc-cns.bsky.social. Both are related to tools to simulate biological tissues. Here’s the description of the open positions. #PhDpositions #PhDOpportunities 👇

You can now apply until the 4th of June !! #EMBOBioImage www.embl.org/about/info/c...

🚀🔬🦠 Releasing 🤖Cellpose-SAM🤖, a cellular segmentation algorithm with superhuman generalization 🦸‍♀️. Try it now on 🤗 huggingface.co/spaces/mouse... paper: www.biorxiv.org/content/10.1... w/ @computingnature.bsky.social 1/n

Cellpose-SAM: superhuman generalization for cellular segmentation https://www.biorxiv.org/content/10.1101/2025.04.28.651001v1

Are you a #BioImageAnalysis pro? Challenge your skills by playing #BIAbubbles! 🎉 Find the right workflows and reproduce the result! 🔬🖥️🕹️ And if you have challenging BIA tasks, new level contributions are welcome! 😀 github.com/haesleinhuep...

napari 0.6.0rc0 is out! Barring any crazy bugs 🐛, 🙏 napari 0.6.0 should be out in a week, Apr 30.

So happy to share that our review on epithelial cell extrusion is out! @levayerr.bsky.social Extrusion is such a plastic, context-dependent process, so capturing it visually in the poster that accompanies the article was a super challenging but fun task! journals.biologists.com/jcs/article/...

Image Analysis job opportunity in the thoroughly amazing city of Copenhagen! employment.ku.dk/all-vacancie...

Great to see that many noise2void inspired denoising algorithms have been ported to @pytorch.org! Kudos to @florianjug.bsky.social and many others ... github.com/CAREamics/ca...

Preprint (update) alert! F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009) 0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France. 👇 a short thread

The registration close Tuesday next week! research.pasteur.fr/en/course/ne...

[Event] Join the NEUBIAS BioImage Analysis Course!🖥️ 2 parallel tracks: ➡️Early career investigators – Master bioimage analysis tools ➡️Analysts – Master & deploy advanced tools, HPC 📅 May 12-16 📍 Institut Pasteur, Paris 🔗 Apply by March 31👉https://bit.ly/3DxvEBV

Mónica Bettencourt-Dias @monicabettencourt.bsky.social, Amy Gladfelter @gladfelterlab.bsky.social, Gautam Dey @gautamdey.bsky.social Samara Reck-Peterson @samreckpeterson.bsky.social @cells4planethealth.bsky.social @embo.org share a call to action to apply the lens of #cellbio to climate challenges.

Calling all... 🔬 Microscopists 💻 BioImage Analysts 👩‍🔬 Life Scientists 📅 Save the Date The 5th edition of the Crick BioImage Analysis Symposium will take place on November 24/25th 2025. More details to follow... #CBIAS2025

[Event] Discover the CoLoC board game!🎲🔬 CoLoC is centered around colocalization in light-microscopy. This event is open to all the academic community. 📅When? April 11, 9:00 - 16:30 📍Where? Lyon Est Faculty of Medicine 🔗Register before April 1st: bit.ly/4imjU4b