Great to see Node staff, #i4A training grantee hernanmn.bsky.social & others at the EMBO "Advanced Methods in BioImage Analysis" course! @ahklemm.bsky.social @perrinegil.bsky.social @jytinevez.bsky.social @france-bioimaging.bsky.social @iemcas.bsky.social More🔽 www.eurobioimaging.eu/news/success...

@scadsai.bsky.social training coordinator @haesleinhuepf.bsky.social provided insights into his professional career in the podcast series “The Microscopists.” If you want to know why he'll never ask biologists for better images again, click here: 🍍 themicroscopists.bitesizebio.com/episodes/rob...

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social! Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬 📅 Applications open Oct 6 (deadline: ~Oct 27) 📍 San Sebastian, Spain. 👉 cvpd.github.io/post/2025-09...

Soutenez l'initiative pour lutter contre la précarité des jeunes scientifiques Objectif : proposer chaque année 95 logements accessibles à des jeunes chercheur.se.s. RDV ici ➡️ faireundon.pasteur.fr ➡️ À l’étape Affectation, choisissez Autre et indiquez : CENTRE ENSEIGNEMENT – Un toit pour étudier

So happy to be part of the "La vie est belle" exhibit in Montpellier via the #EVOLVEproject. The amazing images from the MRI Facility, part of @france-bioimaging.bsky.social, remind us that there is more beauty in life than meets the eye! 👁️🔬

🧵1/14 Preprint thread! Can we predict a cell’s fate based on its dynamics? 🔮 Our new study unveils a framework for watching development unfold in real-time, revealing how a cell's shape and movement encode info about its future fate. 🔬📄 Preprint: tinyurl.com/4shf8v4x

Had an amazing time helping out at the "Advanced methods in bioimage analysis" @embo.org course this week. It was great seeing a bunch of friends and meeting a group of students highly motivated to do better science and eager to learn. Genuinely grateful to @tischi.bsky.social and the org team!

⌛1 month left to apply – 2025 PPU call for candidates We invite you to discover 4 Develpmental & Stem Cell Biology projects and 3 Immunology projects👇 🕰️Application deadline: October 20, 2025 📍Program starts: October 2026 Discover all the projects (50+) & apply: www.pasteur.fr/en/education...

Oh yes-the one and only Robert Haase @haesleinhuepf.bsky.social From #GrandTheftAuto to the impact AI is having on #bioimaging. +the challenges of creating AI courses for bioimage analysis, & his unique perspective as a programmer-turned-biologist. Stream- bit.ly/microscopist... @globias.bsky.social

Some analysts understood all about life

The rest of the afternoon is spent with the students working on their own data with all Software representatives and instructors, of course 🤗 They work that hard, not posing at all! 😆 @jytinevez.bsky.social @perrinegil.bsky.social keep all the attention 😎

Do you want to listen to me ramble about Pasteur's Image Analysis Hub (research.pasteur.fr/en/team/imag...)? Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.

Day 5️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @embl.org @tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev

I gave two seminars at @embl.org Heidelberg these days: One about using LLMs via #biabob for #BioImageAnalysis and one about how LLMs impact BioImage #DataScience Thanks EMBL for having me! Materials #openaccess 🧑‍🏫🖥️🔓 zenodo.org/records/1705... zenodo.org/records/1710... scads.github.io/llm-bia-2025

What better way of celebrating the end of our 2nd day of training classes than with pizza 🍕, refreshements 🍻 and selfies 🤳! 😜

Next #GloBIAS seminar is coming up: join us on 22nd of September, 4 pm CEST to hear from Jean-Yves Tinevez about: The scientific added value of a core-facility dedicated to Bioimage Analysis services. Want to register? -> www.globias.org/activities/b...

Day 2️⃣ of our @embo.org course on "Advanced methods in bioimage analysis" 🔬🖥️🧫 at @embl.org with "Practical session 1: Image Analysis workflow and data management" 💽📊 with the awesome @virginieuhlmann.bsky.social 🤩 Let's the fun start! 💫

Save the date! The @pasteur.fr Pasteur course on image analysis is announced: It will happen from the 1st of June to the 5th 2026. This year there will be only one track: the Early Career Investigator track (beginners). 👇

We (with @nicolasdray.bsky.social @zenlabpasteur.bsky.social) are happy to release officially FishFeats, our #napari plugin to streamline 3D smFish/RNA quantification! 🎊 Available here: github.com/gletort/Fish... user documentation: gletort.github.io/FishFeats/

🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024...

🚨 Molecular Biology of the Cell – Pasteur Course 🧬 This 4-week course explores the molecular mechanisms of cellular life — from vesicular trafficking and cell division to autophagy, host-pathogen interactions, and tumor invasion. 🕰️Application deadline: Sept 15,2025 👉 Apply: bit.ly/47celmj

Last but not least for our #CBIAS2025 guest speaker line-up is Ilaria Testa, fellow at @scilifelab.se. Ilaria and team develop and apply novel super resolution microscopy approaches to understand fundamental biological processes relevant for health and disease 🔗👇 www.scilifelab.se/researchers/...

We continue the #CBIAS2025 speaker intros with @jytinevez.bsky.social, research engineer and core facility manager at the Institut Pasteur. Jean-Yves is one of the minds behind TrackMate and is part of F-BIAS, a federation of bioimage analysts across France 🔗👇 research.pasteur.fr/fr/member/je...

Next one in the #GloBIAS seminar series: Behind the Scenes at SciLifeLab BIIF: Lessons from Managing a National Bioimage Analysis Support Unit. Presented by Anna Klemm, head of BioImage Informatics Infrastructure Unit, Uppsala University, Sweden Wednesday, 27th of August, 2pm CEST

🧬🔬🧪 🎉 Our team at @czbiohub is thrilled to share TWO companion papers out today in @NatureMethods! 📦 Ultrack — robust, scalable nD cell tracking 🌐 inTRACKtive — a beautiful, open-source web viewer for lineage exploration Let’s dive in! 👇 www.nature.com/articles/s41... www.nature.com/articles/s41...

Post a non-religious photo you think of holy.

Moralité: on imagine l'humain beaucoup plus pourri qu'il ne l'est vraiment. On n'a pas survécu tous ces millénaires en étant les plus violents, mais en étant fondamentalement des êtres sociaux et solidaires La violence nous horrifie justement parce qu'elle est une insulte à notre nature profonde 10/

We've updated our BIOP extensions to QuPath 0.6! 🎉 forum.image.sc/t/qupath-bio... One-click extension installs are her! ABBA, Warpy, Cellpose, and the last one? chef's kiss 👌(1/3)

🌍Science sans frontières : un programme de bourses pour permettre à de jeunes scientifiques de pays à revenu faible ou intermédiaire de participer aux Cours Pasteur à Paris. Soutenez l'initiative👇 ➡️À l’étape Affectation, choisissez Autre et indiquez : CENTRE ENSEIGNEMENT – Science sans frontières

Nouvelle expé pour ma thèse en interaction humain-machine à partager un max ! ⏱️ 5 min chrono 💻 En ligne – sur ordinateur ou téléphone 🗣️ Langues : FR / EN / ES / CAT 🔞 Réservée aux 18+ n’ayant pas participé à la version antérieure Le lien : aombusser-hci-study-c7048.web.app Merci infiniment 🙏

A few months ago @eurobioimaging.bsky.social organized the 'Image Data Community Days 2025' during which I could present our work within @france-bioimaging.bsky.social, creating a nationwide, remotely operating core facility for Bioimage Analysis. youtu.be/xtLHiio8RF0?...

👩‍🔬 Scientists at Institut Pasteur identified powerful monoclonal antibodies that neutralize hepatitis E virus, which affects 20 million people yearly. #HepatitisE

Saying goodbye to beautiful @hhmijanelia.bsky.social, after an intense two weeks trackhathon. Organized by legends Caroline Malin-Mayor and Morgan Schwartz in the @janfunkey.bsky.social. It has been awesome and productive. Thank you!!

Welcome to blusky PhD student extraordinaire Laura Xénard @lxenard.bsky.social ! 🐙🪲

Cell tracking is never perfect, and it's important to understand the types of errors your solution contains. Here is my stab at this: Divisualisations in @napari.org. github.com/bentaculum/d... You spin tracks out upwards from the playing video. Green edges are correct, FP in magenta, FN in cyan.

📢Release alert! BoneJ 7.1.4 is out now, bringing 💥100x faster💥 GPU-accelerated 3D Skeletonization, part of the new BoneJ+ extensions. You'll need a token to try it out, from bonej.org/shop Drop us a line [email protected] to get a coupon for a 100% discount on your first token.

🚨 Only 6 days left to apply! Cryo-Electronic Microscopy – Pasteur Course Master cryo-EM fundamentals through a fully hands-on, 2-week training at the Institut Pasteur. 📅 September 29 – October 10, 2025 🗣️ Course in English ⌛ Application deadline: July 31, 2025 👉 bit.ly/4o1KD9H @pasteur.fr

Hey, it's out! doi.org/10.1016/j.ce... Aligning Big Brains and Atlases, ABBA in short, is published in Cell Reports @cp-cellreports.bsky.social . @biancasilvalab.bsky.social's lab added an analysis pipeline on top of it (BraiAn) and did all the relevant biological work. What is it ? Short thread:

As hinted earlier, the biggest change in #PoCA to date: support for 2D/3D image data! 🧩🖼️ In fine, point clouds will be no longer the only game in town—PoCA is evolving into a more general spatial analysis platform. This (maybe too long) movie shows what's coming!

🎉 Amazing NEWS for #ImageAnalysis & #LifeSciences folks! The ultimate #imageanalysis #hattrick is here 🧠🔬✨ www.biovoxxel.de/individual-w... Read the 🧵👇 All necessary info and links at the end ! #bioimaging #learning #science #lifescience #microscopy #fiji #imagej #machinelearning #deeplearning

Check out this thread I wrote for @epimechfc.bsky.social ⬇️

Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into 🧵 for a couple quick highlights (1/x):

Are you developing with TrackMate? If yes let's get in touch: I plan to make API breaking changes in the future version (v8, soonish) that will break existing detector and segmentation algorithms integration. Details on the forum: forum.image.sc/t/upcoming-b...

We'll be looking for a postdoc to bring these approaches together, funded for 3+ years. If you are interested please get in touch; if you know someone who might be interested please share this message. 3/3

We've just been awarded a grant to study the cellular basis of regeneration – to track the progenitors of sensory organs in the context of leg regeneration, in our favourite crustacean tinyurl.com/parhyale, based on live imaging and cell tracking. The project involves some cool collaborations... 1/3

Engineer position, 12 months starting Oct. 1st, 2025, to study the role of NOTCH3 in human iPSC-derived neurogenesis models. Solid previous expertise required in cell culture, notably iPSCs, and organoid generation. Send CV, motivation letter and reference letter(s) to [email protected]

🗣️ "Hey FBI, explain how it works!" Today, we’re exploring one of the main #electronmicroscopy techniques: Transmission Electron Microscopy. 💡 Did you know? #TEM is available on many platforms across FBI. Watch the video to learn more & find out where you can access it!

What does it mean to be part of #EuroBioImaging? Why is Flanders BioImaging 🇧🇪 unique? @sebastianmunck.bsky.social, Flanders BioImaging Spokesperson and Chair of the #EuroBioImaging Panel of Nodes answers this & more... in less than⏱️ 1 minute 15 seconds! Check it out 👀

PLF 2026 : les hypothèses étudiées risquent de réduire fortement les dons aux fondations de recherche. À l’Institut Pasteur, 1/3 de nos ressources dépendent des dons. Affaiblir cette générosité, c’est menacer notre capacité à innover et à protéger la santé de tous. www.pasteur.fr/fr/espace-pr...

We did it! 🙌 After 100 years, swimming's back in the Seine! 📸 JB Gurliat / Ville de Paris