Check out the cool new “release highlights history” page @timmonko.bsky.social cooked up for us! 😍 napari.org/stable/relea... Best of all: it’s automatically generated from release notes so it’ll always stay up to date.

the @napari.org crew came to town! 🥰

Jumping 🕴️ now into "Practical session 4: Behavior Modeling" with @kevinyamauchi.bsky.social online! First things first, students are getting to know how to do #bioimage visualization in Python 🖥️🐍 using @napari.org👇

Lovely talk by Open Software Week participant @ishratz25.bsky.social on the challenges of using @brainglobe.info tools to identify very small regions, in very large images.

Thrilled to share the first story from my postdoc! 🎉 A wonderful experiment + simulations collaboration. In the Drosophila wing, we find that 3D cell shapes affect signalling range and fine-tune developmental patterning www.biorxiv.org/content/10.1... Thread below ⬇️

In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info. neuroinformatics.dev/blog/gsoc_20...

💻 You can directly try out CLEM-Reg for yourself with our @napari.org plugin where we also include a sample benchmark dataset. Installation instructions are here 👉 github.com/krentzd/napa... (8/9) www.youtube.com/watch?v=ud3z...

Super happy to see CLEM-Reg out in @natmethods.nature.com! A short thread on the algorithm behind it and how to try it out for yourself🧵(1/9) www.nature.com/articles/s41...

We (with @nicolasdray.bsky.social @zenlabpasteur.bsky.social) are happy to release officially FishFeats, our #napari plugin to streamline 3D smFish/RNA quantification! 🎊 Available here: github.com/gletort/Fish... user documentation: gletort.github.io/FishFeats/

u-Probe now can be run without a MATLAB license, and exports detection and tracking results in a format that can immediately be visualized with @napari.org! github.com/DanuserLab/u...

Once is an exception, twice is a trend, thrice is a tradition! Save the date for our now-traditional annual OME-NGFF extravaganza in Zurich! Whether you’ve just heard about OME-NGFF and are curious to learn more or if you are working with it every day, there is something for everyone this year!

We're happy to announce the 2025 International OME-NGFF workshop 🎉 📅 Dates: - Symposium: Nov 10–11, 2025 - Hackathon: Nov 12–14, 2025 📍 Location: Zurich, Switzerland Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...  #bioimaging #openscience #OMENGFF #OMEZarr (1/x 🧵)

Each experiment gets a jupyter notebook, so experiments are reproducible and easy to run, even for users with little coding experience. Image processing pipeline is modular, easily adjusted to different cell lines or experiments. Using @napari.org as GUI. Code: github.com/pertzlab/rtm...

I finally managed to upload the first version of the napari-czitools plugin (still in alpha - expect issues...) - open complete CZI images or subsets - read CZI metadata pypi.org/project/napa... or github.com/sebi06/napar...

🚀 napari 0.6.4 is out! Highlights from this bite-sized release: launching scripts from the command line with `napari <path-to-script>` and making the console auto-focus when opened. We’ll be announcing all future napari releases here, so stay tuned! 🔗 Release notes: napari.org/stable/relea...

🚀 napari 0.6.4 is out! Highlights from this bite-sized release: launching scripts from the command line with `napari <path-to-script>` and making the console auto-focus when opened. We’ll be announcing all future napari releases here, so stay tuned! 🔗 Release notes: napari.org/stable/relea...

The BrainGlobe track started with an introduction to image analysis with @napari.org, and then tutorials on how to use @brainglobe.info to register data to atlases, and how to detect cells in whole-brain microscopy images. All our tutorials are online: brainglobe.info/tutorials #niu_osw

📢 After #CBIAS2025, join our hands-on 2-day napari training by @crick.ac.uk @ucl.ac.uk @liverpooluni.bsky.social From conda to plugins to Jupyter, practicals on real data with expert guidance. For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025

Excited to share the final version of the STRESS software paper 🎉 Do you want to measure cell or tissue stresses using deformable beads or droplets, please check this paper: nature.com/articles/s41... Full access: rdcu.be/ezlGj and the preprint thread below ⬇️ x.com/CampasLab/st...

It's hard to express how much gratitude I have to everyone involved in the journey, both mine and @napari.org's, that has led to this point. #EurekaPrizes A small attempt below: 👇

@napari.org @jni.codes is a finalist in the @ardc.edu.au Eureka Prize for Excellence in Research Software. Learn more: youtu.be/0g_MkTa_NwQ #EurekaPrizes

Cell tracking is never perfect, and it's important to understand the types of errors your solution contains. Here is my stab at this: Divisualisations in @napari.org. github.com/bentaculum/d... You spin tracks out upwards from the playing video. Green edges are correct, FP in magenta, FN in cyan.

The 1st working version of my little @napari.org plugin (napari-czitools) is almost ready. It contains sample data, allows to read CZI metadata and can read CZI images (or parts of it) by using the sliders to crop what should be read. Still quite some things to improve ...

first data from the new LLSM in PertzLab @olivierpertz.bsky.social! i always thought nuclei were spherical but they are pancakes???? so much more to see in 3d, but data volume produced is insane, we will have to rethink our analysis pipelines. tips welcome! here shown in @napari.org

🚀 Big news! The napari hub has been reimplemented and is now community-run! 🎉 It's still the go-to place for finding and sharing napari plugins, but the website is now snappier and lighter-weight. Check it out 👉 www.napari-hub.org

#bioimage 🔬 data #visualization and #exploration in @napari.org with the napari-clusters-plotter (0.10.0) becoming yet a bit more versatile: Select objects & put them into new layers for processing, introspection or whatever. Works for all layers, of course! #bioimageanalysis @mazoc.bsky.social

Btw, and in the spirit of #OpenScience, all my #Napari #bioimage analysis #tutorials are freely available — from basics to #segmentation, #tracking, and #clustering. Feel free to explore and share ✌️ 🌍 www.fabriziomusacchio.com/teaching/tea...

What I really like about @napari.org is how well it integrates modern #Python tools. Great to have such a flexible, evolving #opensource platform for #bioimage analysis! 👌 #Napari #imageanalysis #neuroscience

🚀The napari team is excited to announce our brand new development roadmap — a community-informed vision for the future of napari! 🔍Read the blog to learn about our process and priorities: napari.org/island-dispa... 🗺️OR check out the roadmap itself on napari.org: napari.org/stable/roadm...

Excited and honored to speak at the @royalmicrosoc.bsky.social meeting tomorrow where I'll talk about our latest AI tools. Meanwhile, check out Vijay&Arlo's Napari "bootstrapper" plugin for massively accelerated segmentation of multidimensional imaging datasets Github: github.com/ucsdmanorlab...

I'll be at the Learning Zone at #MMC2025 tomorrow afternoon with @martinjones.bsky.social, @lankylaste.bsky.social & Sara Salgueiro Torres, talking about how you can get started using #OpenSource software like #FIJI, @jupyter.org and @napari.org for #ImageAnalysis rms-daim.github.io/DAIM-MMC2025/

FINALLY just released the @napari.org clusters-plotter 0.9.0 🤗 pypi.org/project/napa... The latest version comes with a complete overhaul of the entire codebase to make #microscopy data introspection and browsing even more accessible, intuitive and versatile! #bioimaging Let's have a look 👇🧪💻🔬

We developed Spotiflow with the mindset of making it useful and usable, and as such it comes in different flavors: one can use it as a Python API, as a CLI or with a GUI using our @napari.org plugin! Hopefully more integrations will come soon ;) (7/N)

🚨 We’re hiring TWO new colleagues! 🧠 Structured Metadata Expert – Design data models, standards & annotations for #OMEZarr 🌐 Web Developer / Prototyper – Build interactive tools & demos for the community Both fully remote. Both open science. 🔗 gerbi-gmb.de/resources/ca... #RSE #OpenScience

Reminder: the @globias.bsky.social 2025 symposium is happening Oct 26-31 in Kobe, Japan, and, on top of many other cool bioimage analysis events, several members of the napari core team will be leading a napari hackathon. 🧑‍💻👩‍💻👨‍💻 Registration deadline is Jun 15! www.globias.org/activities/b...

It's been a while since I was legitimately blown away by something but nnInteractive is, I swear, some kind of dark segmentation magic. Every time I think "it can't possibly get this", somehow it does. github.com/MIC-DKFZ/nap...

Ok guys **nobody open any more issues** 😂

DNA channel fluorescence intensity with overlaid object segmentation labels of chromosomes / cell nuclei in a zebrafish embryo. Acquired by Süheyla Eroglu-Kayikci on @visitech.bsky.social iSIM, labeled by student assistant Philip Kohle and rendered by PhD student Nils Friederich using @napari.org

In the context of our @reviewcommons.org revision process, I'm happy to announce Microscopy Nodes v2.2.0! This packs lots of new fun features, including new color management 🌈, clearer transparency handling 🫥, custom default settings 🔧 and more! Preprint at doi.org/10.1101/2025...

This is accompanied by a new set of tutorials showing exactly how you can start making beautiful microscopy visualizations in @blender.org! Following along is also easy with the example OME-Zarr @openmicroscopy.org datasets 😄 Find the tutorials here: www.youtube.com/playlist?lis...

#GloBIAS conference 2025 Kobe, Deadline extended to June 15th! This includes the training school, two hackathons, and taggathon registration, not only the symposium (... but sorry, the travel grant for the training school has closed)

Contributing to open source can be scary, but don't worry! We ourselves often write code where the initial implementation is not the best, but we are here to help simplify life. Want to know more about contributing or have anything else napari you want to discuss come join our community meeting!

We've been trying nnInteractive (github.com/MIC-DKFZ/nap...) to quickly create labeled data for later training an Omnipose model. I whatever black magic you did there, keep at it! It's such a life-changer!

Deadlines extended - you can still register for the GloBIAS conference! We have extended most deadlines. Please check our webpage: tinyurl.com/mr3kx5a5! Looking forward to welcoming you to Kobe, for training, developing and discussing a broad range of BIA topics!

Reminder: if you go to the GloBIAS conference we can help you contribute to napari at the hackathon! A bunch of the team will be there! (Great thanks to the GloBIAS team for accommodating us!!!) More details on the conference website.

Any naparistas going to @globias.bsky.social 2025 in Kobe, Japan? Thanks to the GloBIAS organisers 🙏, we will be hosting a napari hackathon in parallel to the FAIR workflows hackathon! More info on our Zulip: napari.zulipchat.com#narrow/chann... Official site: www.globias.org/activities/b...

Indeed, the participants formed groups and implemented @napari.org plugins from scratch for tasks like pixel classification or cell tracking. At the end, the groups did a live demo of their plugin 💻 I was super impressed! 🥳 #NEUBIASPasteur2025 📚 Course materials: github.com/Image-Analys...

Day 1 of #neubiaspasteur2025 Image Analysis course in the Analysts track: @danielkrentzel.bsky.social teaches the creation of @napari.org plugins. And on day #1, the students have group projects! 😲 But things are going great as you can judge

Secondly, which I think is very cool: You can now draw annotations in napari and upload them to OMERO. Hopefully this makes annotating large datasets a lot less painful! 💥 (Nevermind my shonky drawing - don't annotate like me 😄) Looking forward to feedback/bug reports: github.com/tlambert03/n...

New release: napari-omero 0.5.0 😀@openmicroscopy.org @napari.org thanks to some big contributions from @psobolewskiphd.bsky.social , @will-j-moore.bsky.social and of course @talley.codes. Some features in spotlight 👇 First: napari-omero now supports lazy loading of image pyramids from OMERO🔺: