Want to enhance your image analysis skills with napari? We’re running a two-day training event on how to use napari to effectively analyse your bioimaging data. 🕒 Applications close on 15 September. Learn more and apply 👇 www.crick.ac.uk/whats-on/cbi...

Last chance saloon 🤠 to register for the hands-on 2-day napari training. Application deadline has been extended. www.crick.ac.uk/whats-on/cbi...

Super happy to see CLEM-Reg out in @natmethods.nature.com! A short thread on the algorithm behind it and how to try it out for yourself🧵(1/9) www.nature.com/articles/s41...

CLEM-Reg automates the 3D alignment of volume correlative light and electron microscopy data. www.nature.com/articles/s41...

Great news. Inclusive CBIAS all the way.

Next guest speaker at #CBIAS2025 is Christa Walther, community manager for @globias.bsky.social‬. GloBIAS is a worldwide association that brings together all those interested in #bioimageanalysis, offering opportunities for knowledge exchange, events, training, and resources. 🔗👇 www.globias.org

We continue the #CBIAS2025 speaker intros with @jytinevez.bsky.social, research engineer and core facility manager at the Institut Pasteur. Jean-Yves is one of the minds behind TrackMate and is part of F-BIAS, a federation of bioimage analysts across France 🔗👇 research.pasteur.fr/fr/member/je...

Last but not least for our #CBIAS2025 guest speaker line-up is Ilaria Testa, fellow at @scilifelab.se. Ilaria and team develop and apply novel super resolution microscopy approaches to understand fundamental biological processes relevant for health and disease 🔗👇 www.scilifelab.se/researchers/...

Applications close at the end of the week!

The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs. www.crick.ac.uk/whats-on/cri...

At #CBIAS2025 we will also hear from Ewa Paluch from @cam.ac.uk. Ewa and their team take an interdisciplinary approach combining biology, imaging, mechanical testing and physical modelling to investigate the basic principles underlying animal cell morphogenesis 🔗👇 www.pdn.cam.ac.uk/directory/ew...

We continue the #CBIAS2025 speaker line-up with Dominik Kutra, senior research software engineer in the @ilastik-team.bsky.social. Dominik is one of the core developers of Ilastik, a user-friendly software that leverages machine learning algorithms to easily analyse bioimages 🔗👇 www.ilastik.org

Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5) www.biorxiv.org/content/10.1...

Next up at #CBIAS2025 is @helenajambor.bsky.social‬ from the University of Applied Sciences of the Grisons. Helena researches data visualisation in the life sciences, combining their expertise with large datasets and their interest in data communication 🔗👇 helenajamborwrites.netlify.app/about

Our first #CBIAS2025 invited speaker is Andrew French from @uniofnottingham.bsky.social‬, who specialises in using AI to understand images. Their research interests include image analysis of plants and complex structures and image capture automation 🔗👇 www.nottingham.ac.uk/biosciences/...

The line-up for guest speakers at #CBIAS2025 is looking great! 🎉 We'll introduce them to you in the coming days, on the lead up to the deadline for abstract submission on August 31st. If you want a sneak peek in the meantime, check our website! www.crick.ac.uk/whats-on/cri...

🚨🚨🚨🚨 Don’t leave it too late to submit an abstract to #CBIAS2025 Tell us what you’re up to. 🚨🚨🚨🚨

Abstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit! www.crick.ac.uk/whats-on/cri...

I am stunned! First edition of the "Bio-Imaging with Shakespeare" LinkedIn Newsletter (buff.ly/8x7Shiq) is out for 15h and already 130 subscribers. If you are interested in the topic FOLLOW ME on LinkedIn and Bsky and SUBSCRIBE on LinkedIn buff.ly/cLPh8eZ #bioimageanalysis #biovoxxel #fiji

𝐑𝐞𝐚𝐝 𝐭𝐡𝐞 𝐟𝐮𝐥𝐥 𝐚𝐫𝐭𝐢𝐜𝐥𝐞 𝐡𝐞𝐫𝐞: www.rms.org.uk/community/ne...

📢 After #CBIAS2025, join our hands-on 2-day napari training by @crick.ac.uk @ucl.ac.uk @liverpooluni.bsky.social From conda to plugins to Jupyter, practicals on real data with expert guidance. For Python/ImageJ coders. Apply by 1 Sept – limited to 30! crick.ac.uk/whats-on/cbias-napari-workshop-2025

Ready to automate your #microscopy #imageanalysis tasks? Applications are now open for our next "Introduction to Image Analysis" training course, in London at the @crick.ac.uk on October 27th-28th, 2025! 🔬💻 More info ⬇️ www.crick.ac.uk/whats-on/int...

Long awaited annual leave commencing

Registrations now open and free!! lnkd.in/gBQcrjda

@kbias.bsky.social, @pmsampaio.bsky.social, @tischi.bsky.social, Rocco D'Antuono, ‪and @haesleinhuepf.bsky.social ‬ did a great job of pulling the data together, to describe who we are, where we want to get, and how we get there together. Check out the preprint and join us today! (5/5)

Very happy to announce that this article is now published @dev-journal.bsky.social @biologists.bsky.social journals.biologists.com/dev/article/... With Suad Alsukari and Huei Teng Ng and @gastruloids.bsky.social

Special early bird rate registrations for #CBIAS2025 are closing soon, on July 20th! Register early to get your discounted ticket for this year's edition, happening at the Wellcome Trust in London on November 24th and 25th www.crick.ac.uk/whats-on/cri...

I'll be at the Learning Zone at #MMC2025 tomorrow afternoon with @martinjones.bsky.social, @lankylaste.bsky.social & Sara Salgueiro Torres, talking about how you can get started using #OpenSource software like #FIJI, @jupyter.org and @napari.org for #ImageAnalysis rms-daim.github.io/DAIM-MMC2025/

Of course @dalemoulding.bsky.social @alexpaynedwyer.bsky.social @crick.ac.uk @imperialcollegeldn.bsky.social @ucl.ac.uk @kingscollegelondon.bsky.social @royalmicrosoc.bsky.social

A great day of thinking about teaching bioimage analysis and designing courses at the #TrainTheTrainerBIA2025 @martinjones.bsky.social @makaefer.bsky.social @lankylaste.bsky.social @giuliapaci.bsky.social A well deserved fresh drink!

Lots of food for thought washed down with a cold pint after todays train the trainers 2025 CRICK Partnership & DAIM workshop #trainthetrainerBIA2025 @crick.ac.uk @ucl.ac.uk @imperialcollegeldn.bsky.social @martinjones.bsky.social @lankylaste.bsky.social @giuliapaci.bsky.social @dgaboriau.bsky.social

Now for the most interactive part of todays train the trainers 2025 CRICK Partnership & DAIM workshop #trainthetrainerBIA2025 @crick.ac.uk @ucl.ac.uk @imperialcollegeldn.bsky.social @martinjones.bsky.social @lankylaste.bsky.social @giuliapaci.bsky.social @dgaboriau.bsky.social

Image analysis starts before image acquisition, not after. Great talk by @gomez-mariscal.bsky.social at #ELMI2025 showing how deep learning is pushing the limits of live cell imaging!

Welcome all (new) followers! Besides our work on probes & biosensors I'd like to share what I know about #Rstats and #DataViz. So I composed a book on data visualization with R & ggplot2 (it's work in progress). Target audience = wet lab scientists. Link: joachimgoedhart.github.io/DataViz-prot...

Keen about High Performance Computing & #imageanalysis? Search for #75 at #ELMI2025 this evening @sebastianmunck.bsky.social‬ @makaefer.bsky.social

🚨📣For all of you image analysis enthusiasts. Early bird registration is open until 20/07. It's a friendly, inclusive, inspiring event with lots of time for networking, presenting, socialising. No wonder our image analyst @makaefer.bsky.social aims to attend every year. 🔬🖼️🧑‍💻

Cannot wait for this to happen. We have a great line up of speakers in preparation. Stay tuned for more information. 🔬🏞️🧑‍💻

It’s Mary Anning’s birthday, so time to share @katebeaton.bsky.social’s brilliant cartoon again.

(almost) every talk from OME 2025 is now on YouTube! If you care about microscopy data and about open-source, you should definitely check them out. www.youtube.com/playlist?lis...

Our new LIV-SRF Bioscience Techniques & Research Facility Management MSc programme provides extensive hands-on vocational training to become a technical specialist and core facility manager. Applications open for Sept 2025. More info here: tinyurl.com/jpbyvkkf @livuni-livsrf.bsky.social

I cannot help but think of these rod-rings as oh so pretty. amazing work by some of our @cci-liv.bsky.social users.

The do’s and don’ts of scientific image editing www.nature.com/articles/d41...

So much looking forward to this! 🤩 We're thrilled to be running a new instance of our "Advanced Methods in Bioimage Analysis" course. It's going to be a blast! Apply by June 4th.

"Science is an investment. We will put forward a new 500 million package for 2025-2027 to support the best and the brightest researchers and scientists from Europe and around the world." — President @vonderleyen.ec.europa.eu at the ‘Choose Europe for Science' event at La Sorbonne 🇫🇷

New publication ( @greghurst.bsky.social @ewachrostek.bsky.social ) out using one of the @cci-liv.bsky.social microscopes and image analysis expertise: onlinelibrary.wiley.com/doi/10.1002/... @livuni-livsrf.bsky.social @livuniresearch.bsky.social @zeiss-microscopy.bsky.social

It’s kicking off, the very first Celldiscoverer 7 user group meeting #CD7-UGM hosted by @zeiss-microscopy.bsky.social and @cci-liv.bsky.social part of the @livuni-livsrf.bsky.social at the @livuninews.bsky.social

Your yearly reminder to acknowledge the core facilities you use and their staff scientists in your papers. These scientists are a crucial part of the scientific ecosystem and to continue to exist they need tangible credit for their work. Plus their associated expertise adds credibility to your work.

Me: writes Fiji macro to create a heatmap. Fiji: here are some late 70s arcade/PC game characters.

Bioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis