The Future

Hello little one! 🤖 #nvidia

ICYMI! 🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀 We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025! More information in 🧵 #scverse2025 #Bioinformatics #AgenticAI #Conference

Join us as we explore emerging trends in agentic AI applications across bioinformatics workflows. ✨ Featured Panelists: Kexin Huang - Stanford University Vega Shah, PhD - NVIDIA Loic Royer - Chan Zuckerberg Biohub Network Jonah Cool - Anthropic

🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀 We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025! More information in 🧵 #scverse2025 #Bioinformatics #AgenticAI #Conference

We miss you Merlin! I wish you the best in your new adventure!

Update I'm back in France 🇫🇷! Joining Inserm to build a multi-omics team on retinal development, at the nexus of live imaging, omics & human embryology. Huge thanks to CZ Biohub SF folks, esp. my mentor, friend & science soulmate @loicaroyer.bsky.social for the amazing time. More cool science soon🧪

Today’s office…

🧬🔬🧪 🎉 Our team at @czbiohub is thrilled to share TWO companion papers out today in @NatureMethods! 📦 Ultrack — robust, scalable nD cell tracking 🌐 inTRACKtive — a beautiful, open-source web viewer for lineage exploration Let’s dive in! 👇 www.nature.com/articles/s41... www.nature.com/articles/s41...

This was magical — @loicaroyer.bsky.social live on piano @mpi-cbg.de. Made my day! It’s always amazing to learn about unexpected talents apart from the amazing science.

Day four of #LISH25 begins with a powerful presentation by @loicaroyer.bsky.social on digitizing zebrafish development, combining light-sheet and single-cell data. Loïc took the #walk-up song to another level, improvising on the piano as his massive fish development visualisation played. Beautiful.

Production has started for a new #Snoutscope objective, AMS-AGY v3. It has significantly larger FOV and some other tweaks from v1 and v2. Currently accepting pre-orders. The price will need to increase modestly after deliveries start late October.

Just pushed a 'hot fix' version (2025.6.25.2) of Omega (napari_chatgpt) that addresses some issues introduced by the ever-changing model lists from #OpenAI. pypi.org/project/napa...

Claude can be brutal sometimes...

This is the closest I will probably ever get of the original ‘napari’ 😄 To be exact: 1940.421 km away✈️ @napari.org

I just asked #Claude 3.7 to make a web version of the 'Global Thermonuclear War' game from the classic #WarGames movie from the 80s. And it is not too bad!! Except for its skills at drawing continents... Game play could be more engaging too... haha. claude.ai/public/artif...

According to ChatGPT image generation, this is my 'Spirit Animal'. 😆

🧬🔬🧪 We are seeking a Scientist to push the limits of spatial transcriptomics in zebrafish! Come join us! #MolBio #SpatialTranscriptomics #DevelopmentalBiology #ScienceJobs 🧫🐟🔍 job-boards.greenhouse.io/chanzuckerbe...

Things are getting a bit out of control...

We are in for a mindblowing treat today at @msarscentre.bsky.social with @loicaroyer.bsky.social from @czbiohub.bsky.social hosted by @noahbruderer.bsky.social for a seminar on “Building a virtual embryo, a single cell at a time”.

Loïc Royer @loicaroyer.bsky.social presented today the impressive work of his team @czbiohub.bsky.social in optical engineering and developing analysis tools to explore vertebrate development 🐟🧪 Thank you for an inspiring and visually stunning talk! 🤩

Zoom-in on zebrafish head development captured with a light-sheet microscope. 🧪 #zebrafish #AcademicSky #DevBio #neuroskyence

Humanity, I think we are going to be fine... (for some time)

Exciting opportunity at @CZBiohub SF! Join us as an Optical Scientist developing cutting-edge light-sheet microscopy to map vertebrate development. PhD in Optics/EE/Physics preferred. #ScienceJobs #Microscopy #BioImaging 🧪🔬💻 job-boards.greenhouse.io/chanzuckerbe...

Hi folks! napari is officially on bsky now! 🥳 Let's hit the ground running with a reminder that all are welcome at our next (Atlantic) community meeting on Feb 12, 8:30am SFO / 11:30am NYC / 5:30pm Paris. Agenda and details here: hackmd.io/BXWDZ3i8Q6OA...

We have serious hackers at the hub! Here is Andy Zhou, Genomics Hacker extraordinaire, with his near-neural computer interface (commonly referred as keyboard)

At the @czbiohub even our computer workstations are #zebrafish fanatics! (This is not a flux capacitor, but the CPU cooling system of @ilan_theodoro’s computer 🤣)

At the @czbiohub.bsky.social even our computer workstations are #zebrafish fanatics! (This is not a flux capacitor, but the CPU cooling system of @ilan_theodoro’s computer 🤣)

Congrats to Joe Derisi for being honored with the @StanfordMedArthur Kornberg & Paul Berg Lifetime Achievement Award! Very well deserved! youtu.be/Z5uI3_ptPrE

This is what I have entered in #concur's feedback field:

Karl the Fog has taken over the lower parts of the city! Potrero hill is like an island above the clouds, beautifull! #SanFrancisco

@rrbehringer.bsky.social Dev Bio II pack: go.bsky.app/2qUqVKE

The birth of fruit fly's central nervous system imaged with multicolor #adaptive #lightsheet microscopy. The microscope self-aligns to a signal that appears during imaging. www.nature.com/articles/nbt...

When I go to a concert, I always geek out on the sound consoles and the wizards that control them…

Another video of a developping drosophila embryo, but this time rotating. I beleive tjis was generated in Python using @maweigert.bsky.social 's spimagine rendering tool. www.nature.com/articles/nbt... 🧪🔬🪰💻

Continuing to go through my trove of cool videos... here is a classic from my work with Philipp Keller's team at @hhmijanelia.bsky.social A developing fly embryo imaged with a SiMView #lightsheet microscope augmented with our Autopilot self-alignment system. www.nature.com/articles/nbt... 🧪🔬🪰💻

How is it possible that I have never heard of electrets? The static electricity equivalent of magnets !?! www.youtube.com/watch?v=oTNX...

Continuing to go through my trove of cool videos... here is a classic from my work with Philipp Keller's team at @hhmijanelia.bsky.social A developing fly embryo imaged with a SiMView #lightsheet microscope augmented with our Autopilot self-alignment system. www.nature.com/articles/nbt... 🧪🔬🪰💻

Quantum computers are going to be a very-very-big-thing™️ blog.google/technology/r...

End of Week End…

Interested in getting imaging data like this? ASI is commercializing single-objective light sheet microscopes and might make one like DaXi if there are people who would buy it. DaXi originally developed by @loicaroyer.bsky.social and Bin Yang. vimeo.com/801341925

We will get the cover next time Alexandre… It was a good cover…

Here are two covers proposals for the current Cell issue, but it didn't make it. I love these renders because they are just data, nothing else! Congrats to @merlinlange.bsky.social & @loicaroyer.bsky.social ! #dataviz #sciart 🐡 🧪 Data imported and rendered in #houdini @sidefx.bsky.social

🔊 Exciting AI Research Opportunity! my team at @czbiohub SF is hiring a Research Scientist to develop foundational AI models for BioImage analysis. Join us to work on cutting-edge ML/CV! 💻🔬🧪🧠 #AIJobs #ML job-boards.greenhouse.io/chanzuckerbe...

🔊 Exciting AI Research Opportunity! my team at @czbiohub SF is hiring a Research Scientist to develop foundational AI models for BioImage analysis. Join us to work on cutting-edge ML/CV! 💻🔬🧪🧠 #AIJobs #ML job-boards.greenhouse.io/chanzuckerbe...

We are happy to report that our journals and community sites now have Bluesky accounts. Follow them at: @dev-journal.bsky.social @jcellsci.bsky.social @jexpbiol.bsky.social @dmmjournal.bsky.social @biologyopen.bsky.social @the-node.bsky.social @prelights.bsky.social @focalplane.bsky.social

Continuing down memory lane... Back in 2010, I went down a rabbit hole, learning modern #OpenGL #shader coding, and it was a lot of fun. Here is one of the outcomes of these experiments. I love interactive physics simulations, here are millions of particles in a 1/d force field: vimeo.com/15491183

Looking to satisfy your fish fix? Begin with one of our Starter Packs covering the #zebrafish community: 🐟🧪 PIs/Group Leaders/Senior Scientists v1: go.bsky.app/2cHYybY PIs/Group Leaders/Senior Scientists v2: go.bsky.app/4zBuxAF Early-Career Researchers/Trainees: go.bsky.app/HwxuHey

I am working my way through all the cool videos in my 'CoolVideos' folder, and it is going to take a while. This one is for the #ComputerGraphics geeks out there, and is also rendered with #ClearVolume. This is a rotating max projection of a v=x^y^z (^: bitwise xor) where v is the voxel value.

Start gathering people working on conversational AI. DM/reply if you want to be added to this starter pack. go.bsky.app/Nz6zoJD