Kudos @ritastrack.bsky.social for the great years at NMeth! And congrats to my former colleague Jordao Bragantini for ultrack (and the well deserved cover 🎉) and @teunhuijben.bsky.social for inTRACKtive. Glad I could contribute to these two wonderful endeavors. GO team @loicaroyer.bsky.social! 🧪🔬

#Mifobio2025 @merlinlange.bsky.social's Lecture is online ! 👉 "Building a Multimodal Atlas of Vertebrate Development" 👉 youtu.be/7pj8hMH0stA @cnrs.fr @cnrsbiologie.bsky.social @cnrsingenierie.bsky.social @czbiohub.bsky.social @gdr-imabio-ysn.bsky.social #GDRimabio #InstitutdelaVision

On my way back from a great week at #Mifobio2025. Thanks to the organizers for the inspiring meeting. Cool microscope, nice atmosphere, science by the beach 🔬🧪

Delighted to host Anne Beghin (@mbisg.bsky.social) ✈️ and @merlinlange.bsky.social (Institut de la Vision and @czbiohub.bsky.social ) 🐟 for the Module 4 Multiscale analysis of 3D biological samples Good science and great people. #MiFoBio2025 is really a grand cru 🍷 @gdrimabio.bsky.social

Morning coffee with a nice view of the dune, getting ready for #Mifobio2025

Job alert! We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? See also on the forum: forum.image.sc/t/research-e...

So happy to join my first #Mifobio2025! It’s going to be super fun. If you’re not coming this year, consider the next edition. Looking forward to seeing old friends and meeting new ones. #DevelopmentAtlas 🧪🔬

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Update I'm back in France 🇫🇷! Joining Inserm to build a multi-omics team on retinal development, at the nexus of live imaging, omics & human embryology. Huge thanks to CZ Biohub SF folks, esp. my mentor, friend & science soulmate @loicaroyer.bsky.social for the amazing time. More cool science soon🧪

Students & scientists interested in multiscale integration in biological systems don’t miss this international course at @institutcurie.bsky.social. Explore #computation #morphogenesis #biology #machinelearning & more 🧪 Deadline soon - registration here training.institut-curie.org/courses/mult...

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Happy to share that our MS on the transcriptional regulation of MDKA, a key injury response gene in #zebrafish adult telencephalon, is published @biorxivpreprint.bsky.social !Explore how multiple cis-regulatory elements collaborate to control mdka in telencephalon 🐟🧠 www.biorxiv.org/content/10.1...

Spring break in Paris to enjoy the @mnhn.fr and particularly the gallery of comparative anatomy, such an inspiring place for the future generations of #biologist 🧪 #science

It has been a while since I advertised some of the tools we have released to help researchers analyze the zebrafish genome. So a brief Bluetorial on our zebrafish genomics UCSC public data hub and the bigger effort led by @ferencmueller.bsky.social to create a zebrafish ENCODE project (Danio-CODE):

Zoom-in on zebrafish head development captured with a light-sheet microscope. 🧪 #zebrafish #AcademicSky #DevBio #neuroskyence

Some #zebrafish news. After consulting with the Genome Reference Consortium (GRC) we will annotate one of our Tübingen T2T assemblies as a reference genome. This is an excellent assembly that we can get into the hands of the zebrafish research community right now. We are continuing our efforts

If anyone needs an experienced scientist for consulting with a deep microscopy background, reach out to Emmanuel 👇 #cellbiology #academicsky #neuroscience 🧪

Fantastic work by my Biohub colleague Manu Leonetti and his amazing team published in #Cell! 🧪 Human cell #proteomics subcellular landscape and its dynamic remodeling using #organelle IP. Paper here www.cell.com/cell/fulltex... Explore the date organelles.czbiohub.org Congratulations to the team

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Back for a little while here, I tried this ‘starter pack’ for photonics & optics people: anyone else can follow up to 50 people at the click of a button: go.bsky.app/QrtPj7R. Put your name below and I will add you to the pack.

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Happy to be in sunny☀️San Diego for ASCB Cell Bio! Tomorrow I will present #Ultrack and #inTRACKtive (poster B513) at 11:15 am. Swing by the [email protected] booth (#119) for live demos of these tools + #napari & #zebrahub 🐠 Looking forward to connect!🤩🧪🔬 #CellBio2024 #ASCB24 #celltracking

Live imaging of zebrafish 🐟 embryogenesis acquired with our light-sheet #microscope #daxi 🔬 Microscope: doi.org/10.1038/s415... 🧪 Time-lapse data from our "Zebrahub" developmental atlas: www.cell.com/cell/fulltex... #FluorescenceFriday #zebrafish #AcademicSky #DevBio

There’s always something special and satisfying about seeing your work in print 🧪 #AcademicSky

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The birth of fruit fly's central nervous system imaged with multicolor #adaptive #lightsheet microscopy. The microscope self-aligns to a signal that appears during imaging. www.nature.com/articles/nbt...

New paper out with the Kicheva group by S. Lehr and D. Bruckner! 🧪 Develops a new 2D neural tube organoid, and models its striking self-organized patterns! Key finding: patterning via 2-phase dynamics of BMP, which acts like a temporal relay balancing sequential fate decisions! bit.ly/3OJti4G

Where did our neck muscles come from?🧪 Here's our #evodevo #devbio deep dive feat. #zebrafish, mouse, axolotls, & more! Led by Eglantine Heude & Tajbakhsh lab at Pasteur, the team at National Museum of Natural History France, & lab alumni Karin Prummel & Rob Lalonde. www.nature.com/articles/s41...

Looking much forward to it! 🧪 #devbio #collaborate #evodevo #zebrafish #represent

Voilà! #gitbob and #biabob were updated to support #pixtral, the vision model from the French mistral.ai #LLM provider. It also comes with a free tier 🇫🇷 🇪🇺 🎉 github.com/haesleinhuep... github.com/haesleinhuep...

#FluorescenceFriday time - #Zebrafish embryonic development in action! 🧪🔬 #Microscopy with a light-sheet - view of the embryo's rostral (brain) and caudal (tailbud) ends.

My turn to create a starter pack for scientists using live imaging in their research! Of course, I’ve likely missed many—please let me know who else I should include. Thanks! go.bsky.app/KYYr7xc #liveimaging #livevellimaging #microscopy

Very cool - development, evolution, brain & shark 🧪

#Zebrafish mnx transgenic line! 🐟 It beautifully labels motor neurons in the spinal cord #Neuroscience

Out now in Dev Cell! scRNAseq trajectories describe the cascade of gene expression as cells differentiate, but turning them into a clear understanding of the underlying biology of a cell type's development remains challenging. authors.elsevier.com/c/1k9qj5Sx5g... (1/)

"The lives of cells, recorded"--our new review on genomic recording systems and how they can reveal the dynamics of multicellular development. A pleasure to work on this with amazing colleagues from the Allen Discovery Center for Cell Lineage Tracing. www.nature.com/articles/s41...

Sadly, my #morphogenesis Package fell victim to a bug 🐜 and I had to recreate it from scratch. I tried to add everyone... 👉Please check if you are still in!👈 Please SHARE/Like, so those I might have missed see this post! #cellbio #devbio #science I can also start a Part II... go.bsky.app/RzDD9or

A technician in my group is applying for grad school this year. He is amazing and should be accepted in every program he applies to. In addition to writing him a stellar letter, what are the ethics and etiquette of PIs cold emailing people in those programs to recommend someone?

Here are two covers proposals for the current Cell issue, but it didn't make it. I love these renders because they are just data, nothing else! Congrats to @merlinlange.bsky.social & @loicaroyer.bsky.social ! #dataviz #sciart 🐡 🧪 Data imported and rendered in #houdini @sidefx.bsky.social

Fantastic work and great thread 🧪. Congrats to the authors! A must-read! #DevBio #SingleCell #ML

🔊 Exciting AI Research Opportunity! my team at @czbiohub SF is hiring a Research Scientist to develop foundational AI models for BioImage analysis. Join us to work on cutting-edge ML/CV! 💻🔬🧪🧠 #AIJobs #ML job-boards.greenhouse.io/chanzuckerbe...

My deep learning course at the University of Geneva is available on-line. 1000+ slides, ~20h of screen-casts. Full of examples in PyTorch. fleuret.org/dlc/ And my "Little Book of Deep Learning" is available as a phone-formatted pdf (nearing 700k downloads!) fleuret.org/lbdl/

We've now filled one #Epigenetics, Chromatin and Gene regulation starter pack. Thanks for all the enthusiasm and support, if you'd like to be listed @raduzabet.bsky.social has been hard at work getting part II up and running: go.bsky.app/SqLa3aw

Look who's here @pnas.org ✔️ @science.org ✔️ @naturecellbiology.bsky.social ✔️ @natrevgenet.bsky.social ✔️ @naturebiotech.bsky.social ✔️ @naturemicrobiol.bsky.social ✔️ @naturechemistry.bsky.social ✔️ @genesdev.bsky.social ✔️ @cellchembiol.bsky.social ✔️ @genomeresearch.bsky.social ✔️ @jcellbiol.bsky.social ✔️

Starter Pack: Collective #CellMigration /Dynamics is growing. Looking at related emergent phenomena eg. #intercallation, dorsal closure or branching #morphogenesis? Reach out! Also modelers, soft-matter physicists & YOUNG scientists etc etc! go.bsky.app/DLUDYX3 #cellbio #SoftMatterPhysics #science

I get to chat with a classroom who wanted someone that is a: marine biologist, animal scientist, AND neuroscientist 🥰. I'm super excited! So, here's a shark brain!

“The collective diffraction of light produces an array of colors. When the fish contracts and relaxes its muscles to swim, the sarcomeres slightly change in length, causing a shifting rainbow effect.” #scicomm #animalcoloration #iridescence #fish www.sciencenews.org/article/tran... 🧪 🐟 🌈

Here’s the updated Computational Biology Starter Pack! Let me know if you'd like to be included. go.bsky.app/QVPoZXp

Just published in Development (@biologists.bsky.social): doi.org/10.1242/dev....

Whole-brain spatial transcriptomics 🧪🤯 Congratulations to all the team @peruhlen.bsky.social