scverse
@scverse.bsky.social
📤 1144
📥 0
📝 222
Foundational tools for omics data (mostly in python).
pinned post!
🎉 scverse conference 2025 Registration & Call for Abstracts NOW OPEN! 🎉 We're excited to announce that registration and the call for abstracts are officially open for the scverse Conference 2025! Details in thread! 🧵 1/3
5 months ago
1
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We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here:
jobs.helmholtz-muenchen.de/jobposting/d...
14 days ago
1
3
3
We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (@MKoutrouli) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting:
lnkd.in/dZpbKKsY
18 days ago
0
2
0
We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (
@mkoutrouli.bsky.social
) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting:
lnkd.in/dZpbKKsY
23 days ago
0
5
1
We wrapped up an inspiring week with a visit to NVIDIA headquarters right after the scverse conference. Huge thanks to the NVIDIA Healthcare team and
@severin7.bsky.social
for hosting us and for the great discussions on scaling single-cell analysis and accelerating open science ⚡️
about 1 month ago
0
10
4
We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (
@maltekuehl.com
) will be presenting on BioContextAI! More information and Zoom registration link in 🧵
about 1 month ago
1
2
1
Full house for our Bi[o]hub workshop on Day 3! Communities aren’t just built, they are co-created. Together, we’re shaping an open, connected world of all-things-single-cell research, where sharing tools and ideas drives discovery.
about 1 month ago
0
5
2
We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (
@maltekuehl.com
) will be presenting on BioContextAI! More information and Zoom registration link in 🧵
about 1 month ago
1
4
2
We are proud to announce that we're partnering with
@biocontext.ai
(
biocontext.ai
), a new open-source initiative for building agentic systems in biomedical research. Learn more in our announcement:
scverse.org/blog/2025-11...
about 2 months ago
0
3
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We just released scanpy 1.12rc1 (
scanpy.readthedocs.io/en/latest/re...
) Highlights: - Dask support in `sc.get.aggregate` for pseudobatching + `highly_variable_genes(flavor='seurat_v3')` - More functions allow specifying `layers` and `obsm` - Turn off quirky behavior (new defaults for scanpy 2.0)
loading . . .
Release notes
Version 1.12: 1.12.0rc1 2025-11-10: Breaking changes: Adopt the Scientific Python deprecation schedule: remove Python ≤3.11 support and officially add Python 3.13 and 3.14 support, require anndata≥...
https://scanpy.readthedocs.io/en/latest/release-notes/#rc1-2025-11-10
about 2 months ago
0
5
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We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵
about 2 months ago
1
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reposted by
scverse
Lukas Heumos
about 2 months ago
Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At
@scverse.bsky.social
we're contributing to this effort - can't wait to share what we're building
add a skeleton here at some point
0
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Meet the keynote speakers for the 2025 scverse conference! Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University 🧵
@elhamazizi.bsky.social
@columbiauniversity.bsky.social
#scverse
#scverse2025
#machinelearning
#genomics
#cancerimmunology
about 2 months ago
1
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We're pleased to announce that we are now offering online attendance via Zoom. Remote attendance is available for 30 USD, and you can secure your spot by registering at
www.eventbrite.com/e/scverse-co...
. We hope to see you online at the conference!
loading . . .
Scverse Conference 2025
From the foundational open-source software in the life sciences — to its large community coming together
https://www.eventbrite.com/e/scverse-conference-2025-tickets-1550049392459
about 2 months ago
1
4
2
We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵
about 2 months ago
1
2
1
Meet the keynote speakers for the 2025 scverse conference! Erika Alden DeBenedictis, Co-founder of The Align Foundation 🧵
@erika-alden.bsky.social
@alignbio.bsky.social
@pioneerlabs.bsky.social
#scverse
#scverse2025
#StructuralBiology
#Biotech
#Stanford
about 2 months ago
1
3
1
Meet the keynote speakers for the 2025 scverse conference! John Marioni, Head of Computation at Genentech Research and Early Development and former head of EBI 🧵
#scverse
#scverse2025
#AI
#DrugDevelopment
#MachineLearning
#ComputationalBiology
#Biotech
#Pharma
#Genentech
about 2 months ago
1
4
1
Meet the keynote speakers for the 2025 scverse conference! Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai 🧵
@panosroussos.bsky.social
#scverse
#scverse2025
#SingleCell
#SpatialTranscriptomics
#Conference
#Keynote
about 2 months ago
1
1
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We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST!
@kexinhuang.bsky.social
will be presenting on Biomni: Building a Virtual Biomedical Scientist. (Zoom registration link and more information in thread!) 🧵
2 months ago
1
0
0
We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST!
@kexinhuang.bsky.social
will be presenting on Biomni: Building a Virtual Biomedical Scientist. (Zoom registration link and more information in thread!) 🧵
2 months ago
1
2
1
🌟 Thank You to Our Diamond Sponsor: Somite! 🌟 We're thrilled to recognize Somite as a Diamond Sponsor of scverse conference 2025! 💎
#scverse2025
#ComputationalBiology
#SingleCell
#FoundationModels
#CellTherapy
#RegenerativeMedicine
#AIinBiology
2 months ago
1
0
0
🌟 Thank You to Our Gold Sponsor: Genentech! 🌟 We're delighted to recognize Genentech as a Gold Sponsor of scverse conference 2025! 🏆
#scverse2025
#ComputationalBiology
#SingleCell
#DrugDiscovery
#Genentech
#SpatialOmics
#Bioinformatics
#Biotechnology
2 months ago
1
1
1
🌟 Thank You to Our Platinum Sponsor: 10x Genomics! 🌟 We're delighted to recognize 10x Genomics as a Platinum Sponsor of scverse conference 2025! 🏆
@10xgenomics.bsky.social
#scverse2025
#ComputationalBiology
#SingleCell
#SpatialOmics
#10xGenomics
#Bioinformatics
#Biotechnology
2 months ago
1
1
1
🧬 Tahoe Workshop at scverse conference 2025 🧬 Disease Biology and Therapeutics in the Age of Frontier Datasets
@tahoetherapeutics.bsky.social
#scverse2025
#ComputationalBiology
#DrugDiscovery
#TahoeTherapeutics
#SingleCell
#PerturbationBiology
2 months ago
1
1
1
🌟 Thank You to Our Silver Sponsor: Proteintech! 🌟 We're excited to recognize Proteintech as a Silver Sponsor of scverse conference 2025! 🥈
@proteintech.bsky.social
#scverse2025
#Proteintech
#ComputationalBiology
#SingleCell
#Antibodies
#ProteomicsTools
#SpatialOmics
#Bioinformatics
2 months ago
1
2
2
We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis. (Zoom registration link and more information in thread!) 🧵
2 months ago
1
4
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Last call, scverse community! 🐦 Early-bird closes October 17 for the scverse Conference 2025. Single-cell, open science, and the people behind it — all in one place. 📝 Register here:
www.eventbrite.com/e/scverse-co...
2 days of talks + 1 day of workshops ℹ️ Info:
scverse.org/conference2025
3 months ago
0
2
2
🌟 Thank You to Our Gold Sponsor: Stellaromics! 🌟 We're proud to recognize Stellaromics as a Gold Sponsor of scverse conference 2025! 🥇
@stellaromics.bsky.social
#scverse2025
#SpatialBiology
#3DSpatial
#ComputationalBiology
#SingleCell
#Stellaromics
#SpatialOmics
#Bioinformatics
3 months ago
1
4
2
We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis. (Zoom registration link and more information in thread!) 🧵
3 months ago
1
4
3
🧠 Arc Workshop at the upcoming scverse conference 2025 🧠 Processing and Modeling Large-Scale Single-Cell Perturbation Data with Machine Learning 🧵
@arcinstitute.org
#scverse2025
#PerturbSeq
#MachineLearning
#SingleCell
#CRISPR
#GenomicScreening
#VirtualCells
3 months ago
1
2
1
🌟 Thank You to Our Diamond Sponsor: Chan Zuckerberg Initiative! 🌟 We're thrilled to announce that the Chan Zuckerberg Initiative (CZI) is supporting scverse conference 2025 as a Diamond Sponsor! 💎
@chanzuckerberg.bsky.social
#ComputationalBiology
#SingleCell
#SpatialOmics
#CELLxGENE
3 months ago
1
0
1
ICYMI! 🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀 We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025! More information in 🧵
#scverse2025
#Bioinformatics
#AgenticAI
#Conference
3 months ago
1
6
2
🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀 We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025! More information in 🧵
#scverse2025
#Bioinformatics
#AgenticAI
#Conference
3 months ago
1
7
6
🌟 Thank You to Our Silver Sponsor: Calico Life Sciences ! 🌟 We're excited to recognize Calico as a Silver Sponsor of scverse conference 2025! 🥈 Details in thread! 🧵
#scverse2025
#AgingResearch
#ComputationalBiology
#SingleCell
#Longevity
#CalicoLabs
#SpatialOmics
3 months ago
1
2
1
🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵
@chanzuckerberg.bsky.social
#scverse2025
#SingleCell
#SpatialOmics
#CELLxGENE
#VirtualCells
#AIBiology
3 months ago
1
0
0
🌟 Thank You to Our Diamond Sponsor: Tahoe Therapeutics! 🌟 We're thrilled to announce that Tahoe Therapeutics is supporting scverse conference 2025 as a Diamond Sponsor! 💎 Details in thread! 🧵
@tahoetherapeutics.bsky.social
#ComputationalBiology
#SingleCell
#DrugDiscovery
#TahoeTherapeutics
3 months ago
1
1
1
We will have our next community meeting on Tuesday, 2025-09-30 at 18:00 CEST! Ziqian Zheng will be presenting on Spotiphy, a tool that enables single-cell spatial whole transcriptomics via generative modeling. (Zoom registration link and more information in thread!) 🧵
3 months ago
1
0
0
We will have our next community meeting on Tuesday, 2025-09-30 at 18:00 CEST! Ziqian Zheng will be presenting on Spotiphy, a tool that enables single-cell spatial whole transcriptomics via generative modeling. (Zoom registration link and more information in thread!) 🧵
3 months ago
1
1
1
We will have our next community meeting on Tuesday, 2025-09-16 at 18:00 CEST! Niklas Kempynck will be presenting on CREsted, a package for training enhancer models on scATAC-seq data. (Zoom registration link and more information in thread!) 🧵
3 months ago
1
1
1
🎉 scverse conference 2025 Abstracts DEADLINE IN LESS THAN 48 HOURS! 🎉 The deadline to submit abstracts for the scverse Conference 2025 is 11:59PM PST, September 15, 2025! More information in thread 🧵
#scverse
#scverse2025
#SingleCell
#Conference
3 months ago
1
2
1
We will have our next community meeting on Tuesday, 2025-09-16 at 18:00 CEST! Niklas Kempynck will be presenting on CREsted, a package for training enhancer models on scATAC-seq data. (Zoom registration link and more information in thread!) 🧵
4 months ago
1
7
3
🧠 Arc Workshop at the upcoming scverse conference 2025 🧠 Processing and Modeling Large-Scale Single-Cell Perturbation Data with Machine Learning 🧵
@arcinstitute.org
#scverse2025
#PerturbSeq
#MachineLearning
#SingleCell
#CRISPR
#GenomicScreening
#VirtualCells
4 months ago
1
5
1
🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵
@chanzuckerberg.bsky.social
#scverse2025
#SingleCell
#SpatialOmics
#CELLxGENE
#VirtualCells
#AIBiology
4 months ago
2
6
2
🧬 Tahoe Workshop at scverse conference 2025 🧬 Disease Biology and Therapeutics in the Age of Frontier Datasets 🧵
@tahoetherapeutics.bsky.social
#scverse2025
#ComputationalBiology
#DrugDiscovery
#TahoeTherapeutics
#SingleCell
#PerturbationBiology
4 months ago
1
3
2
🎉scverse conference 2025 Call for Abstracts DEADLINE EXTENDED! 🎉 We're excited to announce that the deadline to submit abstracts for the scverse Conference 2025 has been extended to September 15, 2025! 🧵
#scverse
#scverse2025
#SingleCell
#Conference
4 months ago
1
5
5
We will have our next community meeting on Tuesday, 2025-09-02 at 18:00 CEST! Emma Dann will be presenting on "Mapping genetic effects on complex traits with single-cell perturbation data". Zoom registration link:
lnkd.in/dZpbKKsY
4 months ago
0
0
0
reposted by
scverse
Stegle Lab
4 months ago
Super excited for the 2nd edition of the
#scverse
conference! A fantastic opportunity to showcase and discover innovative data frameworks for
#singlecell
analysis, and to meet the developers behind the scverse ecosystem. Looking forward to connecting with the community! Register now! 👇
add a skeleton here at some point
0
2
1
Meet the keynote speakers for the 2025 scverse conference! Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University 🧵
@elhamazizi.bsky.social
@columbiauniversity.bsky.social
#scverse
#scverse2025
#machinelearning
#genomics
#cancerimmunology
4 months ago
1
13
5
We will have our next community meeting on Tuesday, 2025-09-02 at 18:00 CEST! Emma Dann will be presenting on "Mapping genetic effects on complex traits with single-cell perturbation data". 🧵
4 months ago
1
3
1
🧫 Meet the keynote speakers for the 2025 scverse conference! Erika Alden DeBenedictis, Co-founder of The Align Foundation & CEO of Pioneer Labs
@erika-alden.bsky.social
@alignbio.bsky.social
@pioneerlabs.bsky.social
#scverse
#scverse2025
#StructuralBiology
#Biotech
#Stanford
4 months ago
1
8
6
💰 Travel Grants Available for scverse conference 2025! 💰 Did you know we are offering grants to help anyone in financial need attend our annual conference? 🌍 🧵
#scverse
#scverse2025
#SingleCell
#Conference
#StanfordUniversity
#TravelGrant
4 months ago
1
3
2
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