scverse conference 2026 will take place in Copenhagen, October 12–14. ✨ Three days of all-things-single-cell and open-source tooling and community in real life. More details soon but for now, mark your calendars. scverse.org/conference20... See you in Copenhagen 🇩🇰

rapids-singlecell 0.15.0 is out now: GPU kernels ship precompiled — no more runtime CUDA compilation. C++ harmony via nanobind, Harmony2 anti-overintegration, contrast-based edistance with split_by stratification, CUDA 12 & 13 wheels, Python 3.14. scverse.org/blog/2026-rs...

Two inspiring days in Berlin just wrapped up with our scverse hackathon on single-cell and spatial proteomics and it’s hard not to feel energized by what this community can do together.

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We're excited to announce that registration for our upcoming Spatial Omics workshop has opened! Details in 🧵

We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST ! Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent. Details in 🧵

We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST ! Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent. Details in 🧵

We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST ! Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python. Details in 🧵

We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST ! Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python. Details in 🧵

We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST ! Ian Ferenc Diks (@ianfd.bsky.social) will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.

We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST ! Ian Ferenc Diks will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.

We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here: jobs.helmholtz-muenchen.de/jobposting/d...

We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (@MKoutrouli) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting: lnkd.in/dZpbKKsY

We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (@mkoutrouli.bsky.social) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting: lnkd.in/dZpbKKsY

We wrapped up an inspiring week with a visit to NVIDIA headquarters right after the scverse conference. Huge thanks to the NVIDIA Healthcare team and @severin7.bsky.social for hosting us and for the great discussions on scaling single-cell analysis and accelerating open science ⚡️

We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI! More information and Zoom registration link in 🧵

Full house for our Bi[o]hub workshop on Day 3! Communities aren’t just built, they are co-created. Together, we’re shaping an open, connected world of all-things-single-cell research, where sharing tools and ideas drives discovery.

We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI! More information and Zoom registration link in 🧵

We are proud to announce that we're partnering with @biocontext.ai (biocontext.ai), a new open-source initiative for building agentic systems in biomedical research. Learn more in our announcement: scverse.org/blog/2025-11...

We just released scanpy 1.12rc1 (scanpy.readthedocs.io/en/latest/re...) Highlights: - Dask support in `sc.get.aggregate` for pseudobatching + `highly_variable_genes(flavor='seurat_v3')` - More functions allow specifying `layers` and `obsm` - Turn off quirky behavior (new defaults for scanpy 2.0)

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵

Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At @scverse.bsky.social we're contributing to this effort - can't wait to share what we're building

Meet the keynote speakers for the 2025 scverse conference! Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University 🧵 @elhamazizi.bsky.social @columbiauniversity.bsky.social #scverse #scverse2025 #machinelearning #genomics #cancerimmunology

We're pleased to announce that we are now offering online attendance via Zoom. Remote attendance is available for 30 USD, and you can secure your spot by registering at www.eventbrite.com/e/scverse-co.... We hope to see you online at the conference!

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵

Meet the keynote speakers for the 2025 scverse conference! Erika Alden DeBenedictis, Co-founder of The Align Foundation 🧵 @erika-alden.bsky.social @alignbio.bsky.social @pioneerlabs.bsky.social #scverse #scverse2025 #StructuralBiology #Biotech #Stanford

Meet the keynote speakers for the 2025 scverse conference! John Marioni, Head of Computation at Genentech Research and Early Development and former head of EBI 🧵 #scverse #scverse2025 #AI #DrugDevelopment #MachineLearning #ComputationalBiology #Biotech #Pharma #Genentech

Meet the keynote speakers for the 2025 scverse conference! Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai 🧵 @panosroussos.bsky.social #scverse #scverse2025 #SingleCell #SpatialTranscriptomics #Conference #Keynote

We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST! @kexinhuang.bsky.social will be presenting on Biomni: Building a Virtual Biomedical Scientist. (Zoom registration link and more information in thread!) 🧵

We will have our next community meeting on Tuesday, 2025-10-28 at 18:00 CEST! @kexinhuang.bsky.social will be presenting on Biomni: Building a Virtual Biomedical Scientist. (Zoom registration link and more information in thread!) 🧵

🌟 Thank You to Our Diamond Sponsor: Somite! 🌟 We're thrilled to recognize Somite as a Diamond Sponsor of scverse conference 2025! 💎 #scverse2025 #ComputationalBiology #SingleCell #FoundationModels #CellTherapy #RegenerativeMedicine #AIinBiology

🌟 Thank You to Our Gold Sponsor: Genentech! 🌟 We're delighted to recognize Genentech as a Gold Sponsor of scverse conference 2025! 🏆 #scverse2025 #ComputationalBiology #SingleCell #DrugDiscovery #Genentech #SpatialOmics #Bioinformatics #Biotechnology

🌟 Thank You to Our Platinum Sponsor: 10x Genomics! 🌟 We're delighted to recognize 10x Genomics as a Platinum Sponsor of scverse conference 2025! 🏆 @10xgenomics.bsky.social #scverse2025 #ComputationalBiology #SingleCell #SpatialOmics #10xGenomics #Bioinformatics #Biotechnology

🧬 Tahoe Workshop at scverse conference 2025 🧬 Disease Biology and Therapeutics in the Age of Frontier Datasets @tahoetherapeutics.bsky.social #scverse2025 #ComputationalBiology #DrugDiscovery #TahoeTherapeutics #SingleCell #PerturbationBiology

🌟 Thank You to Our Silver Sponsor: Proteintech! 🌟 We're excited to recognize Proteintech as a Silver Sponsor of scverse conference 2025! 🥈 @proteintech.bsky.social #scverse2025 #Proteintech #ComputationalBiology #SingleCell #Antibodies #ProteomicsTools #SpatialOmics #Bioinformatics

We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis. (Zoom registration link and more information in thread!) 🧵

Last call, scverse community! 🐦 Early-bird closes October 17 for the scverse Conference 2025. Single-cell, open science, and the people behind it — all in one place. 📝 Register here: www.eventbrite.com/e/scverse-co... 2 days of talks + 1 day of workshops ℹ️ Info: scverse.org/conference2025

🌟 Thank You to Our Gold Sponsor: Stellaromics! 🌟 We're proud to recognize Stellaromics as a Gold Sponsor of scverse conference 2025! 🥇 @stellaromics.bsky.social #scverse2025 #SpatialBiology #3DSpatial #ComputationalBiology #SingleCell #Stellaromics #SpatialOmics #Bioinformatics

We will have our next community meeting on Tuesday, 2025-10-14 at 18:00 CEST! Yimin Zheng will be presenting on LazySlide, a Python framework for whole slide image (WSI) analysis. (Zoom registration link and more information in thread!) 🧵

🧠 Arc Workshop at the upcoming scverse conference 2025 🧠 Processing and Modeling Large-Scale Single-Cell Perturbation Data with Machine Learning 🧵 @arcinstitute.org #scverse2025 #PerturbSeq #MachineLearning #SingleCell #CRISPR #GenomicScreening #VirtualCells

🌟 Thank You to Our Diamond Sponsor: Chan Zuckerberg Initiative! 🌟 We're thrilled to announce that the Chan Zuckerberg Initiative (CZI) is supporting scverse conference 2025 as a Diamond Sponsor! 💎 @chanzuckerberg.bsky.social #ComputationalBiology #SingleCell #SpatialOmics #CELLxGENE

ICYMI! 🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀 We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025! More information in 🧵 #scverse2025 #Bioinformatics #AgenticAI #Conference

🚀 NEW PANEL ANNOUNCEMENT: Agentic Workflows in Bioinformatics at scverse 2025! 🚀 We're thrilled to introduce an exciting panel discussion at the upcoming scverse Conference 2025! More information in 🧵 #scverse2025 #Bioinformatics #AgenticAI #Conference

🌟 Thank You to Our Silver Sponsor: Calico Life Sciences ! 🌟 We're excited to recognize Calico as a Silver Sponsor of scverse conference 2025! 🥈 Details in thread! 🧵 #scverse2025 #AgingResearch #ComputationalBiology #SingleCell #Longevity #CalicoLabs #SpatialOmics

🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵 @chanzuckerberg.bsky.social #scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology

🌟 Thank You to Our Diamond Sponsor: Tahoe Therapeutics! 🌟 We're thrilled to announce that Tahoe Therapeutics is supporting scverse conference 2025 as a Diamond Sponsor! 💎 Details in thread! 🧵 @tahoetherapeutics.bsky.social #ComputationalBiology #SingleCell #DrugDiscovery #TahoeTherapeutics

We will have our next community meeting on Tuesday, 2025-09-30 at 18:00 CEST! Ziqian Zheng will be presenting on Spotiphy, a tool that enables single-cell spatial whole transcriptomics via generative modeling. (Zoom registration link and more information in thread!) 🧵

We will have our next community meeting on Tuesday, 2025-09-30 at 18:00 CEST! Ziqian Zheng will be presenting on Spotiphy, a tool that enables single-cell spatial whole transcriptomics via generative modeling. (Zoom registration link and more information in thread!) 🧵