@tomas-p.bsky.social
📤 78
📥 165
📝 8
Post-doc researcher at CQSB-SU-París
#yeast
#genomics
reposted by
ERGA - European Reference Genome Atlas
14 days ago
🔎 Robyn Shaw shares key insights from a global meta-analysis: Within-population genetic diversity is declining on timescales shaped by human activity, but
#conservation
can help mitigate the loss. 🔗
www.nature.com/articles/s41...
@coalitioncongen.bsky.social
@robynshaw.bsky.social
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Global meta-analysis shows action is needed to halt genetic diversity loss - Nature
A comprehensive meta-analysis of global terrestrial and marine genetic diversity covering more than three decades of research demonstrates rapid loss of genetic diversity and identifies conservation interventions that could mitigate this process.
https://www.nature.com/articles/s41586-024-08458-x
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reposted by
FunGIALab
12 days ago
🚀 ¿Buscas una oportunidad postdoctoral en biotecnología fúngica, evolución o IA aplicada a datos multiómicos? En FunGIALab (IATA-CSIC, Valencia) buscamos candidat@s para
#JuanDeLaCierva
,
#MSCA
y más. 🌍 Entorno internacional, proyectos punteros y gran ambiente. 📄 Info disponible aquí:
bit.ly/4nZm9wC
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Job offers
SACO - Servicio de Almacenamiento Compartido de la Organización - SGAI - CSIC
http://bit.ly/4nZm9wC
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reposted by
bioRxiv Evolutionary Biology
26 days ago
Allelic variation in MAL33 drives ecological adaptation of maltose metabolism in Saccharomyces eubayanus
https://www.biorxiv.org/content/10.1101/2025.09.15.676268v1
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reposted by
Gilles FISCHER
29 days ago
New preprint from the lab: we show that the ability to switch mating type was lost at least 13 times independently in the evolution of S. cerevisiae. At least 27% of isolates are heterothallic with a strong association with polyploidy and heterozygosity
www.biorxiv.org/content/10.1...
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Repeated losses of self-fertility shaped heterozygosity and polyploidy in yeast evolution
Evolutionary transitions in mating strategy have profound consequences for genetic variation and adaptation. In Saccharomyces cerevisiae, mating-type switching is a central feature of the life cycle t...
https://www.biorxiv.org/content/10.1101/2025.09.12.675800v1
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reposted by
Yeast Journal
about 1 month ago
We are very happy to announce that
#Yeast
is launching a new special issue on the International Yeast Meetings of 2025:
#ICYGMB32
,
#pombe2025
and
#ISSY38
. The deadline for abstract submission is 30th September 2025. Hurry up!!! More info in the thread below.
onlinelibrary.wiley.com/page/journal...
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Yeast Call for Papers: International Yeasts Meetings of 2025
Yeast is a microbiology journal for research in the rapidly moving field of yeast biology. We publish the most significant developments in unicellular fungi.
https://onlinelibrary.wiley.com/page/journal/10970061/call-for-papers/si-2025-000773
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reposted by
Linda Horianopoulos
about 1 month ago
We often talk about THE whole genome duplication in yeasts, but we find new evidence of additional whole genome duplications in other yeast species! Check out this preprint led by
@kylethedavid.bsky.social
www.biorxiv.org/content/10.1...
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Discovery of additional ancient genome duplications in yeasts
Whole genome duplication (WGD) has had profound macroevolutionary impacts on diverse lineages, preceding adaptive radiations in vertebrates, teleost fish, and angiosperms. In contrast to the many know...
https://www.biorxiv.org/content/10.1101/2025.08.31.673279v1.full.pdf+html
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reposted by
Richard Lenski
about 1 month ago
Should more microbiologists be running long-term evolution experiments? It isn't just me who thinks so :>)
dynamicecology.wordpress.com/2025/09/02/b...
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reposted by
liti_nice
about 1 month ago
Delighted to see
@sakshikhaiwal.bsky.social
work in print
www.embopress.org/doi/full/10....
Huge thank to
@univcotedazur.bsky.social
for providing extensive support on this project,
@pedrobeltrao.bsky.social
and Jonas groups for huge help,
@cnrs.fr
@ircan.bsky.social
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Predicting natural variation in the yeast phenotypic landscape with machine learning | Molecular Systems Biology
imageimageAn ensemble of phenotypes measured in the genome-sequenced 1,011 S. cerevisiae collection were coupled with genomics and molecular-level data to benchmark machine learning models for quantitative phenotypic predictions at scale. Large-...
https://www.embopress.org/doi/full/10.1038/s44320-025-00136-y
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reposted by
Javier Santoyo
2 months ago
Accurate, scalable structural variant genotyping in complex genomes at population scales.
#VariantGenotyping
#StructuralVariants
#PopulationScale
#Genomics
#Bioinformatics
@molbioevol.bsky.social
🧬 🖥️
academic.oup.com/mbe/advance-...
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reposted by
Nature Portfolio
3 months ago
Nature spoke to five early-career researchers who began their PhDs during the early days of the COVID-19 pandemic and are now planning their next steps as they graduate.
#Academicsky
🧪
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Class of 2025: five PhD students reveal realigned priorities in wake of COVID and cuts
Scientists who began their doctoral studies in 2020 found their feet during a global pandemic and are graduating into an uncertain and chaotic future.
https://go.nature.com/4kSxtsv
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Such an inspiring week at ICYGMB32 ✌🏾. So glad to see friends and colleagues!
#Yeast2025
3 months ago
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reposted by
Society for Molecular Biology and Evolution
3 months ago
For all attending the SMBE Satellite Meeting in Puerto Varas, Chile, on Molecular Mechanisms of Adaptation and Experimental Evolution, please remember to register before the deadline on July 31st. 📝 July 31, 2025 📅 October 6-8, 2025 🔗
smbechile2025.cl
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reposted by
Ana Pontes
3 months ago
Starting off Bluesky with a highlight! Proud to share our latest review in Current Biology on Yeast Domestication. 🔗https://doi.org/10.1016/j.cub.2025.04.056
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reposted by
HittingerLab
3 months ago
We have an opening for postdoctoral training! Please apply by 15th August 2025 for full consideration. Here is the ad:
hittinger.genetics.wisc.edu/People/Join/...
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https://hittinger.genetics.wisc.edu/People/Join/postdocAd2025.pdf
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reposted by
HittingerLab
3 months ago
In another fruitful collaboration with the
@rokaslab.bsky.social
, Hittinger Lab members
@katarina-aranguiz.bsky.social
and
@linder-surprise.bsky.social
, et al. established a ML framework to identify gene families in the yeast subphylum Saccharomycotina whose copy numbers predicted ROS resistance.
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Machine learning reveals genes impacting oxidative stress resistance across yeasts - Nature Communications
Yeasts are exposed to oxidative stress during routine metabolism, bioproduction, and interactions with other organisms. Here, the authors use a machine learning classifier to identify genes that are p...
https://www.nature.com/articles/s41467-025-60189-3
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reposted by
Joseph Schacherer
3 months ago
The latest story from the @haploteam highlights the phenotypic impact of acquired subgenomes in allopolyploids, through the lens of 1,060 Brettanomyces bruxellensis genomes. Nice collaboration with
@univbordeaux.bsky.social
@unistra.fr
@cnrsbiologie.bsky.social
www.nature.com/articles/s41...
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Whole-genome sequencing of 1,060 Brettanomyces bruxellensis isolates reveals significant phenotypic impact of acquired subgenomes in allopolyploids - Nature Communications
The authors sequence and phenotype over 1,000 isolates of the yeast Brettanomyces bruxellensis, and show how allopolyploidization reshapes genome evolution and enhances phenotypic diversity, highlight...
https://www.nature.com/articles/s41467-025-60706-4
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reposted by
Rike Stelkens
4 months ago
Job alert! We have a postdoc position available in the Stelkens Lab at Stockholm University. Join us and apply experimental evolution and comparative genomics in the model system yeast to test for parallel climate adaptation. Apply through this link:
su.varbi.com/en/what:job/...
Deadline 15 August.
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🇨🇱
add a skeleton here at some point
5 months ago
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reposted by
Rike Stelkens
5 months ago
One of our main sponsors, the Knut and Alice Wallenberg Foundation, has published a nice article about our work. Yay to fundamental research!
@kawresearch.bsky.social
kaw.wallenberg.org/en/research/...
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Wild yeasts as a model for climate research | Knut and Alice Wallenberg Foundation
Wild yeasts live in the forests all around us. Yet, little is known about the role they play in ecosystems. They can be used to develop new beer and bread flavors, but wild yeast can also serve as a u...
https://kaw.wallenberg.org/en/research/wild-yeasts-model-climate-research
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reposted by
Evomics Lab
6 months ago
📢 3 Postdoc positions available in
@evomicslab.bsky.social
targeting on genome instability evolution of both yeast and human genomes. Both computational genomics and experimental genomics backgrounds are welcome! 🧬🧑💻🧪 For more information, see
evomicslab.org
or send me a message!
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Evomics Lab – Exploring Omics in the Light of Evolution
https://evomicslab.org
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reposted by
James Hemker
6 months ago
Excited to share the first manuscript from my PhD in which we leveraged ultra-long Nanopore sequencing, D. melanogaster inbred lines, and a ton of manual validation to investigate the effects of long-read length on population-level structural variant (SV) calling accuracy!
doi.org/10.1101/2025...
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Manual validation finds only ultra-long long-read sequencing enables faithful, population-level structural variant calling in Drosophila melanogaster euchromatin
The increasing accessibility of long-read sequencing and the rapid development of automated variant callers are promoting the generation of population-level structural variation data. However, the eff...
https://doi.org/10.1101/2025.04.21.649852
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reposted by
Yeast Posting
7 months ago
Unexplored Yeast diversity in Seed Microbiota Full text:
www.biorxiv.org/content/10.1...
#yeast
#microbiology
#saccharomyces
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reposted by
Gilles FISCHER
7 months ago
International Conference on Yeast Genetics & Molecular Biology -
#Yeast2025
🥖🍺 🍷🍶 🌳🦟 🧬 Last week to submit your abstract:
premc.org/yeast2025/su...
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reposted by
Rike Stelkens
7 months ago
We have a 4-year fully funded PhD position available! Research topics include but are not limited to 1) Parallel evolution of climate adaptation in Europe and South America 2) The genetic architecture of temperature adaptation 3) The evolution of pathogenicity
su.varbi.com/en/what:job/...
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PhD student in Evolutionary Genomics with Yeast
The Department of Zoology of Stockholm University includes ca. 80 employees, including researchers, PhD students, and administrative staff. Research and education at the department occurs in an intern
https://su.varbi.com/en/what:job/jobID:798314/
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reposted by
Yeast Journal
8 months ago
Hi everybody! The Yeast journal is finally on Bluesky! Follow us to keep updated on the latest research articles, reviews and special issues on
#Yeast
biology and more! 🙂
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reposted by
Pfliegler Lab at University of Debrecen
8 months ago
1of3 Our new preprint now online:
www.biorxiv.org/content/10.1...
Commercial
#Saccharomyces
cerevisiae baker's yeasts: strain redundancy, genome plasticity, and colonization of the sourdough environment and the human body
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reposted by
Robert Arkowitz
8 months ago
www.nature.com/articles/s41...
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Fungal impacts on Earth’s ecosystems - Nature
This Review delves into the fungal kingdom, exploring the relationships among fungi, animals, plants and the environment, and investigating both the threats posed by fungi and their potential benefits...
https://www.nature.com/articles/s41586-024-08419-4
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reposted by
Yeast Posting
8 months ago
32nd International Conference of Yeast Genetics and Molecular Biology
#yeast2025
📌
#yeast
#microbiology
#yeastbiology
#biomol
add a skeleton here at some point
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reposted by
EMBL
8 months ago
Scientists at University of Buenos Aires, EMBL Hamburg, and others mapped yerba mate’s genome, providing surprising facts about its biochemistry and evolution of caffeine biosynthesis. 🧉🧬🧪 Find out more:
www.embl.org/news/science...
@spcembl.bsky.social
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reposted by
Yeast Posting
8 months ago
Fermentative yeast diversity at the northern range limit of their oak tree hosts Full text:
www.biorxiv.org/content/10.1...
#yeast
#yeastbiology
#microbiology
#biomol
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reposted by
Marc Somssich
9 months ago
📜 Yerba mate (Ilex paraguariensis) genome provides new insights into convergent evolution of caffeine biosynthesis 🧑🔬 Federico A. Vignale, Andrea Hernandez Garcia, Todd J. Barkman, Adrian G. Turjanski, et al. 📔
@elife.bsky.social
🔗
elifesciences.org/articles/104...
#️⃣
#PlantSciene
#PlantMetabolism
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Yerba mate (Ilex paraguariensis) genome provides new insights into convergent evolution of caffeine biosynthesis
DNA sequencing of the yerba mate (Ilex paraguariensis) genome reveals convergent genomic changes, biochemical pathways, mutations, and substrate-binding orientations responsible for caffeine biosynthe...
https://elifesciences.org/articles/104759
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Experimental evolution 🤝🏾 hybridization
add a skeleton here at some point
9 months ago
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Nice work lucho! 🫰🏽🍺
@saona-la.bsky.social
add a skeleton here at some point
9 months ago
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reposted by
Yeast Posting
9 months ago
Cell integrity limits ploidy in budding yeast Full text:
academic.oup.com/g3journal/ad...
#yeast
#yeastbiology
#microbiology
#molecularbiology
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reposted by
Yeast Posting
9 months ago
Mutations in yeast are deleterious on average regardless of the degree of adaptation to the testing environment Full text:
royalsocietypublishing.org/doi/10.1098/...
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reposted by
Nature Reviews Genetics
9 months ago
New online! Diversity and consequences of structural variation in the human genome
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Diversity and consequences of structural variation in the human genome
Nature Reviews Genetics, Published online: 21 January 2025; doi:10.1038/s41576-024-00808-9Collins and Talkowski provide a broad overview of structural variation in the human genome that covers their mutational properties, the dynamics of population…
https://go.nature.com/40ohIS3
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reposted by
Saccharomyces Genome Database
9 months ago
Yeast Genetics & Genomics at CSHL July 22 - August 12, 2025 Application Deadline: March 31, 2025 Arrival: July 22nd by 6pm EST Departure: August 12th around 12pm EST For more info and to apply please visit the Yeast Genetics & Genomics course website:
meetings.cshl.edu/courses.aspx...
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reposted by
Molecular Biosystems Conference
9 months ago
Exciting times! 🧬🧪 Our lineup is READY and will be announced soon. Plan to join us in southern Chile for the premier LatAm event on gene regulation!
Molbiosystems.com
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4th Molecular Biosystems Conference -- 2025
Leading Latin American conference on Eukaryotic Gene Regulation & Functional Genomics.
https://Molbiosystems.com
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reposted by
Yeast Posting
9 months ago
Co-evolutionary dynamics of microbial communities and flavor profiles during natural fermentation of Cabernet Sauvignon and Merlot: A comparative study within a single vineyard Full text:
www.sciencedirect.com/science/arti...
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Its official now. Dr Peña 😎. After a few couple of years on Francisco’s lab I feel nothing but gratitude.
#PatagonianYeast
#PhdLife
add a skeleton here at some point
9 months ago
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My last summer party at the Lab (LGM). it was a funny one 🫣.
#Phdlife
#OutsideTheLab
9 months ago
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reposted by
SMBE Chile Adaptation & Evolution Meeting
10 months ago
🚨Keynote Alert🚨 We’re excited to welcome
@rquatrini.bsky.social
from @USanSebastian / @FunCienciayVida as a keynote speaker! Join us for the
@official-smbe.bsky.social
Satellite Meeting Molecular Mechanisms of Adaptation and Experimental Evolution🧬 Puerto Varas, Chile 🗓️ October 6-8, 2025
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reposted by
Yeast Posting
10 months ago
The Impact of Selected Lachancea Yeast Strains on the Production Process, Chemical Composition and Aroma Profiles of Beers Full text:
pubmed.ncbi.nlm.nih.gov/39683832/
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reposted by
Yeast Posting
10 months ago
Plasticity and environment-specific relationships between gene expression and fitness in Saccharomyces cerevisiae Full text:
www.nature.com/articles/s41...
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reposted by
Ákos T Kovács
10 months ago
Unlocking the potential of experimental evolution to study drug resistance in pathogenic fungi -in NPJ antimicrobials and resistance from
@hanscarolus.bsky.social
with Patrick van Dijck lab
www.nature.com/articles/s44...
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Unlocking the potential of experimental evolution to study drug resistance in pathogenic fungi - npj Antimicrobials and Resistance
npj Antimicrobials and Resistance - Unlocking the potential of experimental evolution to study drug resistance in pathogenic fungi
https://www.nature.com/articles/s44259-024-00064-1
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reposted by
Yeast Posting
10 months ago
Overview of the Saccharomyces cerevisiae population structure through the lens of 3,034 genomes Full text:
academic.oup.com/g3journal/ar...
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reposted by
Yeast Posting
10 months ago
Exploring adaptation routes to low temperatures in the Saccharomyces genus Full text:
www.biorxiv.org/content/10.1...
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reposted by
Roli Roberts
10 months ago
In a cool twist on their previous work,
@grantkinsler.bsky.social
Yuping Li
@gsherloc.bsky.social
&
@petrovadmitri.bsky.social
use yeast to reveal that
#evolution
involves a) early large-effect pleiotropic mutations, b) a shift towards more modular adaptation
@plosbiology.bsky.social
plos.io/4glXoXJ
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reposted by
SMBE Chile Adaptation & Evolution Meeting
10 months ago
🚨 Keynote Announcement! 🚨 We’re excited to welcome
@christianlandry.bsky.social
as a keynote speaker at the
@official-smbe.bsky.social
Satellite Meeting! Join us in exploring Molecular Mechanisms of Adaptation and Experimental Evolution. 📍 Puerto Varas, Chile 🌿🗻 🗓️ October 6-8 2025
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