Gilles FISCHER
@gillesfischer.bsky.social
📤 338
📥 383
📝 51
Evolution, Genomics, Yeast
reposted by
Gilles FISCHER
Kenneth Loi
about 10 hours ago
Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below.
6
249
144
Extensive novel genetic diversity in indigenous peoples of America
www.nature.com/articles/s41...
loading . . .
The evolutionary history and unique genetic diversity of Indigenous Americans - Nature
Analysis of 128 high-coverage Indigenous American genomes shows extensive diversity shaped by several South American dispersals, ancient Australasian admixture, archaic introgression and long-term ada...
https://www.nature.com/articles/s41586-026-10406-w
5 days ago
0
1
0
reposted by
Gilles FISCHER
Judith Berman
16 days ago
open.substack.com/pub/ofthebra...
loading . . .
I’m a Nobel Prize-winning immigrant. I can no longer recognize this country.
Attacks on science and immigrants are destroying America.
https://open.substack.com/pub/ofthebrave/p/im-a-nobel-prize-winning-immigrant?utm_source=direct
0
3
1
reposted by
Gilles FISCHER
Kristoffer Krogerus
about 1 month ago
In our recent study, we created over 1000 intraspecific yeast hybrids by crossing genetically diverse strains and tested how well they grow under harsh industrial conditions such as high ethanol, salt, and organic acids.
enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
loading . . .
Influence of Ploidy and Genetic Background on Stress Tolerance of Intraspecific Yeast Hybrids
A large set of intraspecific yeast hybrids was constructed using two strategies that yielded series of hybrids with variable ploidy. Phenotyping of the hybrids was carried out in high-stress media to....
https://enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/1751-7915.70337
1
12
7
Super nice story, a must 5min read
communities.springernature.com/posts/why-an...
loading . . .
Why animals (and predatory bacteria) outsource costly amino acids
A simple teaching question — why some amino acids are essential — revealed a striking energy-based pattern. Convergent evolution in predatory bacteria and a new statistical framework helped us show th...
https://communities.springernature.com/posts/why-animals-and-predatory-bacteria-outsource-costly-amino-acids
28 days ago
0
2
0
journals.plos.org/plosbiology/...
loading . . .
Genotype-fitness mapping of adaptive mutants reveals shifting low-dimensional structure across divergent environments
Predicting the effect of a genetic mutation on fitness is a major challenge in evolutionary biology. This study uses fitness effects of a large collection of adaptive yeast mutants in multiple lab env...
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003618
28 days ago
0
2
0
reposted by
Gilles FISCHER
Maitreya Dunham
about 1 month ago
Now published! Short title could be: How to do genetics with dead things. A cross-species rescue by mating method to interrogate gene essentiality across the Saccharomyces genus
doi.org/10.17912/mic...
loading . . .
A cross-species rescue by mating method to interrogate gene essentiality across the Saccharomyces genus. | microPublication
https://doi.org/10.17912/micropub.biology.002022
1
19
7
thetyee.ca/News/2026/03...
loading . . .
How ‘Fire Fungi’ Help Put Burnt Landscapes Back Together | The Tyee
Before plants and animals recolonize after a wildfire, fungi get to work.
https://thetyee.ca/News/2026/03/23/Fire-Fungi-Help-Put-Burnt-Landscapes-Back-Together/?utm_source=bluesky
about 1 month ago
0
1
0
A 50 kb bacterial genome
www.nature.com/articles/s41...
loading . . .
Convergent extreme reductive evolution in ancient planthopper symbioses - Nature Communications
Symbiotic bacteria can have exceedingly small genomes. This study finds that ancient bacterial symbionts of planthoppers have repeatedly evolved the smallest known genomes, losing most biosynthetic fu...
https://www.nature.com/articles/s41467-026-69238-x
about 1 month ago
0
3
0
reposted by
Gilles FISCHER
Sissel Jentoft
about 1 month ago
Finally is the paper where we present the unique genomic architectures of the Arctic codfishes out!! Nice work by
@gadus-sivus.bsky.social
and co-authors …
@biovitenskap.bsky.social
@unioslo-cees.bsky.social
link.springer.com/article/10.1...
loading . . .
Rapid genome modifications including chromosomal fusions and large-scale inversions are key features in Arctic codfish species - Genome Biology
Background Genome evolvability involves activation of transposable elements (TEs) that result in novel genomic rearrangements, including translocations, deletions, duplications, as well as larger stru...
https://link.springer.com/article/10.1186/s13059-026-03975-6
1
36
17
reposted by
Gilles FISCHER
The Independent
about 1 month ago
New Covid variant has been identified and is already spreading in 25 states
loading . . .
New Covid variant has been identified and is already spreading in 25 states
Researchers say the strain could evade protection from current Covid shots
https://trib.al/RLyE2x2
4
67
80
reposted by
Gilles FISCHER
Rachel Maddow
about 1 month ago
I know this has circulated with alacrity recently, so you may have already seen it, but if you haven't... WOW BOY HOWDY it's the most useful thing. Thank you
cardcatalogforlife.substack.com
-- this is a very very very helpful public service:
cardcatalogforlife.substack.com/p/google-has...
loading . . .
Google Has a Secret Reference Desk. Here's How to Use It.
40 Google features to find exactly what you need, the alternative search engines that do things Google won't, and the reference desk framework underneath all of it.
https://cardcatalogforlife.substack.com/p/google-has-a-secret-reference-desk
296
11720
5154
Encouraging and full of hope: this study shows that even species on the brink of extinction can regain lost genetic diversity and recover over time.
www.science.org/doi/10.1126/...
loading . . .
Escaping bottlenecks: The demographic path to genetic recovery in koalas (Phascolarctos cinereus)
Population bottlenecks can lead to evolutionary dead ends by eroding genetic diversity and intensifying inbreeding. Although theory predicts possible escape routes, direct observations of this process...
https://www.science.org/doi/10.1126/science.adz1430
about 1 month ago
0
3
1
reposted by
Gilles FISCHER
PLOS Biology
about 1 month ago
Polarized growth in
#Spombe
needs Cdc42, but what role does it play in cell fusion?
@sajjitasaha.bsky.social
@sophiemartinlab.bsky.social
&co show that mitotic polarized growth responds linearly to Cdc42 levels, but mating involves a sharp switch-like response
@plosbiology.org
🧪
plos.io/4bvGIhb
0
13
3
www.nytimes.com/2026/03/20/s...
loading . . .
David Botstein, Gene-Mapping Pioneer, Dies at 83
https://www.nytimes.com/2026/03/20/science/david-botstein-dead.html
about 1 month ago
0
1
1
reposted by
Gilles FISCHER
Yeast Journal
about 2 months ago
ANNOUNCEMENT: The webpage for the upcoming yeast meetings of 2026 has recently been updated. Have a look at it to find out which exciting
#yeast
#conferences
are ahead!!! 😀
onlinelibrary.wiley.com/page/journal...
loading . . .
Yeast | Microbiology Journal | Wiley Online Library
Yeast is a microbiology journal for research in the rapidly moving field of yeast biology. We publish the most significant developments in unicellular fungi.
https://onlinelibrary.wiley.com/page/journal/10970061/homepage/yeastmeetings
0
10
8
reposted by
Gilles FISCHER
Yeast Journal
about 2 months ago
In the latest
#Yeast
review article, A. Kiely, F. O'Halloran, P. Young, N. F. Lowndes,
@murielgalway.bsky.social
and K. Finn discuss the latest advances in understanding the versatile role of Rad9 in the DNA Damage Response in Saccharomyces cerevisiae 🧬
onlinelibrary.wiley.com/doi/10.1002/...
loading . . .
The Multifaceted Role of Rad9 in the DNA Damage Response of Saccharomyces cerevisiae
To maintain the integrity of the genome, cells have evolved a complex signalling system, termed the DNA damage response (DDR), which detects DNA damage and promotes DNA repair. To date, over 600 prot....
https://onlinelibrary.wiley.com/doi/10.1002/yea.70011
0
9
5
📢 In our new study, we identify the predominant natural route to polyploidy in S. cerevisiae. Stepwise polyploidization operates through iterative cycles of events termed "Sporulate–Endoreplicate–Mate" (SEM). Really excellent work led by
@cintiagomez.bsky.social
👏
www.biorxiv.org/content/10.6...
loading . . .
https://www.biorxiv.org/content/10.64898/2026.02.20.706944v1
2 months ago
1
12
5
reposted by
Gilles FISCHER
Max Haase
2 months ago
Our paper is now out in Nature: “Ancient co-option of LTR retrotransposons as yeast centromeres”
www.nature.com/articles/s41...
A short thread on how retrotransposons helped give rise to yeast point centromeres. 1/14
loading . . .
Ancient co-option of LTR retrotransposons as yeast centromeres - Nature
Evolutionarily related ‘proto-point’ centromeres providing resolution to the evolutionary origins of point centromeres are identified in yeast, and comparison shows they evolved in an ancestor with re...
https://www.nature.com/articles/s41586-025-10092-0
9
234
130
reposted by
Gilles FISCHER
Craig Kaplan
2 months ago
This is a fascinating paper that reveals defined and clear mechanism for a phenomenon that for some seemed unbelievable- the up regulation of genes paralogous to those with specific types of inactivating mutations. This is called transcriptional adaptation 1/
www.science.org/doi/10.1126/...
loading . . .
Mechanisms linking cytoplasmic decay of translation-defective mRNA to transcriptional adaptation
Transcriptional adaptation (TA) is a genetic robustness mechanism through which mutant messenger RNA (mRNA) decay induces sequence-dependent up-regulation of so-called adapting genes. How cytoplasmica...
https://www.science.org/doi/10.1126/science.aea1272
4
119
54
reposted by
Gilles FISCHER
Brooke Weinstein
3 months ago
Hello Bluesky! Does Nₑ really explain mutation rate (μ) or genome size (GS) in vertebrates? We find the apparent Nₑ–μ link in Bergeron et al. (2023) is a “back-door” path via generation time, and GS is decoupled from both Nₑ and life-history traits.
www.pnas.org/doi/10.1073/...
#evobio
#PNAS
2
45
19
www.nature.com/articles/s41...
loading . . .
Inducing novel endosymbioses by implanting bacteria in fungi - Nature
A study presents an approach to establish and track a new endosymbiotic partnership by implanting bacteria in a non-host fungus and shows that stable inheritance of the implanted bacteria is possible ...
https://www.nature.com/articles/s41586-024-08010-x
2 months ago
0
3
0
www.science.org/doi/10.1126/...
loading . . .
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
https://www.science.org/doi/10.1126/science.adt2760
2 months ago
0
1
0
reposted by
Gilles FISCHER
PLOS Biology
3 months ago
#Azole
resistance in
#Candida
albicans poses a growing threat, and is linked to
#StressResponse
.
@annaselmecki.bsky.social
&co show that mutations in the oxidative stress TF Cap1 promote
#DrugResistance
while exposing a lethal vulnerability at high azole doses
@plosbiology.org
🧪
plos.io/4rOrfOz
0
15
6
reposted by
Gilles FISCHER
Lars Eicholt
3 months ago
Check out our new review in Nature Reviews Genetics on de novo emerged genes and proteins. How they emerge, are lost and persist - and how de novo emerged proteins relate to randomized proteins!
@bornberglab.bsky.social
www.nature.com/articles/s41...
add a skeleton here at some point
3
60
30
reposted by
Gilles FISCHER
Kyle T David
3 months ago
Excited to announce our latest publication in reporting evidence for three (3!) new whole genome duplications (WGDs) in yeasts. Scientists have often wondered why WGD is so rare in fungi, it turns out we may just not have been looking hard enough! 🧪 🍄 🧬
www.sciencedirect.com/science/arti...
loading . . .
Discovery of additional ancient genome duplications in yeasts
Whole-genome duplication (WGD) has had profound macroevolutionary impacts on diverse lineages,1,2 preceding adaptive radiations in vertebrates,3,4,5 t…
https://www.sciencedirect.com/science/article/pii/S0960982225017063
1
44
18
reposted by
Gilles FISCHER
Dmitri Petrov
3 months ago
Registration is open for the inaugural GRC conference in the Function of Evolving Systems. Aug 9-14, 2026, Waterville Valley. Truly stellar speaker lineup. Student/postdoc fellowships are available! Please come join us!
www.grc.org/function-of-...
@joybergelson.bsky.social
loading . . .
https://www.grc.org/function-of-evolving-systems-conference/2026/@joybergelson.bsky.social
1
47
42
reposted by
Gilles FISCHER
Yeast Journal
3 months ago
The deadline for the submission of papers to the special issue on the International Yeast Meetings of 2025 has been extended to 31 March. Papers should be connected to one of the meetings listed below. Hurry up and don't miss this chance! More information at:
onlinelibrary.wiley.com/page/journal...
add a skeleton here at some point
1
28
15
reposted by
Gilles FISCHER
EMBL
3 months ago
EMBL is deeply saddened by the passing of our Interim Director General Peer Bork, a pioneering scientist who left an indelible imprint on life science research in Europe and beyond. We extend our deepest condolences to his family, friends, and colleagues.
www.embl.org/news/people-...
1
110
48
reposted by
Gilles FISCHER
Alex Crits-Christoph
3 months ago
Sad to hear that Oxford Nanopore wants to discontinue the P2Solo later this year in favor of the P2i (the very pricey P2Solo that comes with a GPU to do the basecalling in it) It feels like such a big step in the wrong direction. They are a great sequencing company, not a great GPU upseller...
loading . . .
nanoporetech-customers - Sign In
https://community.nanoporetech.com/posts/product-update-p2
4
26
16
reposted by
Gilles FISCHER
Comparative genomics group IRB-BSC Barcelona (PI: Toni Gabaldón)
3 months ago
📣
#paper
"Uncovering actionable trade-offs of antifungal resistance in a yeast pathogen" Check out our new publication in
@molsystbiol.org
where we systematically map stress-related trade-off associated with drug resistance in Candida glabrata (N. glabratus)
link.springer.com/article/10.1...
2
11
4
Last paper in collaboration with Zhou XU. We explored the natural telomere length diversity in S. cerevisiae and found that ploidy level, and subtelomere structure drive telomere length variation. Higher ploidy levels lead to telomere elongation!
genome.cshlp.org/content/earl...
loading . . .
Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
https://genome.cshlp.org/content/early/2026/01/16/gr.281132.125
3 months ago
0
7
3
reposted by
Gilles FISCHER
EMBL Events
3 months ago
📣 #EMBOEvoEco returns in 2026 to uncover the mechanistic foundations of ecological and evolutionary change! Keynote lectures will spotlight the ecology and evolution of symbiosis. Submit your abstract for the EMBO Workshop:
https://s.embl.org/eae26-01-bl
#EMBOEvoEco
0
10
6
reposted by
Gilles FISCHER
Anne Lopes
4 months ago
Fresh news on de novo genes! Happy to present our latest work published in Nature communications:
www.nature.com/articles/s41...
Keywords not in specific order: intergenic ORFs, de novo genes, GC content, foldability, genetic code, ancestral sequence reconstruction and more :)
2
48
24
reposted by
Gilles FISCHER
Evelina Tutucci
4 months ago
Happy to share that the our manuscript "Cyclin CLB2 mRNA localization and protein synthesis link cell cycle progression to bud growth" is now finally out in its final form
@natcomms.nature.com
www.nature.com/articles/s41...
Below a short🧵 with the key findings!
3
23
12
reposted by
Gilles FISCHER
Joseph Schacherer
4 months ago
First paper of the year for the HaploTeam, showing how domestication repeatedly reshapes sexual–asexual life cycle trade-offs in yeast, and revealing convergent evolution. Huge kudos to the team, brilliantly led by Jing Hou!
www.pnas.org/doi/10.1073/...
loading . . .
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2526682123
1
12
4
Great paper on the genetics of facultative multicellularity in marine yeast
www.nature.com/articles/s41...
loading . . .
Client Challenge
https://www.nature.com/articles/s41586-025-09881-4
4 months ago
0
1
0
Last work of the lab showing that Repeated losses of self-fertility shaped heterozygosity and polyploidy in yeast evolution | PNAS
www.pnas.org/doi/10.1073/...
loading . . .
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2525679123
4 months ago
2
23
10
reposted by
Gilles FISCHER
Marco Fumasoni
4 months ago
📢 Join us in sunny Lisbon 🇵🇹 2-5 June for the
@embo.org
workshop ☀️ “The rules of the game: biophysical & molecular principles in cellular evolution” Apply by March 1st! Please repost to help spread the word!
meetings.embo.org/event/26-cel...
#EMBORulesOfTheGame
@gimmfoundation.bsky.social
loading . . .
The rules of the game: biophysical & molecular principles in cellular evolution
Cells are the fundamental units of life, shaped by evolution into a remarkable diversity of forms and functions. Much is known about the roles of genes and proteins, the regulation of molecular proce…
https://meetings.embo.org/event/26-cellular-evolution
1
14
14
reposted by
Gilles FISCHER
liti_nice
4 months ago
Here is our first publication of 2026 which is the first article of a special issue that mark the journal 40 anniversary - happy new year to all the
#yeast
community
add a skeleton here at some point
0
23
8
reposted by
Gilles FISCHER
Yeast Journal
4 months ago
The new year has just started and we are happy to share the news that the new issue of
#Yeast
(Volume 42, Number 12, December 2025) is finally out!!! 😀😀😀 This issue includes two research articles and two reviews. You can browse it at this link:
onlinelibrary.wiley.com/toc/10970061...
loading . . .
Happy 40th birthday Yeast: Yeast: Vol 42, No 12
Yeast is a microbiology journal for research in the rapidly moving field of yeast biology. We publish the most significant developments in unicellular fungi.
https://onlinelibrary.wiley.com/toc/10970061/current
0
13
6
reposted by
Gilles FISCHER
Bruce Webber
4 months ago
Extinction rarely departs with drama, it slips out the back door while we’re still debating the guest list. These records are made official on the Red List. "Conservation failures are often recognised only once they can no longer be reversed." via
@mongabay.com
:
news.mongabay.com/short-articl...
21
932
327
share.google/QjCMRLGj1uQk...
loading . . .
https://share.google/QjCMRLGj1uQkr4SqP
4 months ago
0
0
0
reposted by
Gilles FISCHER
Saccharomyces Genome Database
5 months ago
As many of us 🎁 things up for the year, make sure all your ℹ️'s are dotted- and all your
#yeast
emojis are downloaded! If you haven't yet, make sure to add the emojyeast collection to all your 📱💻🖥️⌚️
mayaschuldiner.wixsite.com/schuldinerla...
Thanks to the amazing Schuldiner lab for these!
0
16
5
reposted by
Gilles FISCHER
Veronika Kivenson
5 months ago
New paper out: An archaeal genetic code with all TAG codons as pyrrolysine:
www.science.org/doi/10.1126/...
loading . . .
An archaeal genetic code with all TAG codons as pyrrolysine
Multiple genetic codes developed during the evolution of eukaryotes and bacteria, yet no alternative genetic code is known for archaea. We used proteomics to confirm our prediction that certain archae...
https://www.science.org/doi/10.1126/science.adu2404
1
59
36
reposted by
Gilles FISCHER
Animalcules
5 months ago
www.pnas.org/doi/10.1073/...
#MicroSky
loading . . .
The role of active mRNA–ribosome dynamics and closing constriction in daughter chromosome separation in Escherichia coli | PNAS
The mechanisms by which two sister chromosomes separate and partition into daughter cells in bacteria remain poorly understood. A recent theoretica...
https://www.pnas.org/doi/10.1073/pnas.2508100122
0
4
2
reposted by
Gilles FISCHER
PLOS Biology
6 months ago
When colonizing a new habitat, organisms adapt to maximize their reproductive success via
#LifeHistory
#evolution
.
@ecoevodevolab.bsky.social
@cbank.bsky.social
show that life history evolution facilitates niche diversification across a range of theoretical models
@plosbiology.org
🧪
plos.io/4p7YT0a
0
7
4
reposted by
Gilles FISCHER
Yeast Journal
6 months ago
In the latest
#Yeast
research article, Miguel A. Rocha, Gowda Bhavani and Jacob Fleischmann investigate the role of exonuclease-resistant ribosomal RNAs in Saccharomyces cerevisiae, their relationship with nutritional status and the TOR signalling pathway.
onlinelibrary.wiley.com/doi/10.1002/...
loading . . .
18S and 25S Exonuclease Resistant Ribosomal RNA Molecules Are Produced by 5′‐End Modification During TOR Inhibition.
Saccharomyces cerevisiae produces exonuclease-resistant rRNA molecules upon TOR inhibition. This phenomenon occurs when cells enter the diauxic phase, upon addition of rapamycin to the culture, or wh...
https://onlinelibrary.wiley.com/doi/10.1002/yea.70007
0
9
6
reposted by
Gilles FISCHER
ScienceClic
6 months ago
Nouvelle vidéo 🎉 Pourquoi le prix Nobel de physique 2024 concernait l'I.A. ? Comment sont nés les réseaux de neurones ? Quel est le lien avec les champs quantiques ? Toutes ces réponses en 13 minutes ⤵️
youtu.be/2kbAId70b_I
loading . . .
La Physique de l'I.A.
YouTube video by ScienceClic
https://youtu.be/2kbAId70b_I
0
19
7
reposted by
Gilles FISCHER
Molecular Biology and Evolution
6 months ago
Independently evolved supergenes control colony social organization and queen reproductive strategies in several ant lineages. Sigeman et al. uncover a novel 9 Mb supergene controlling queen size and social organization in Myrmica ruginodis. 🔗
doi.org/10.1093/molbev/msaf255
#evobio
#molbio
#ants
0
24
9
Load more
feeds!
log in