Evomics Lab
@evomicslab.bsky.social
📤 136
📥 186
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Exploring Omics in the Light of Evolution PI:
@iAmphioxus.bsky.social
Web: www.evomicslab.org
pinned post!
Excited to share our PNAS paper on the genome evolution of an early-diverging
#amphioxus
, Asymmetron lucayanum! There is a long and twisty story behind this work, which also explains the username choice of the lab PI
@iamphioxus.bsky.social
. 😀
@pnas.org
www.pnas.org/doi/10.1073/...
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Insights into cephalochordate genome and gene evolution from the early-diverging amphioxus Asymmetron lucayanum | PNAS
Cephalochordates (amphioxus or lancelet) are considered as living proxies for ancestral chordates due to their key phylogenetic position and slow e...
https://www.pnas.org/doi/10.1073/pnas.2521280123
12 days ago
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Excited to share our PNAS paper on the genome evolution of an early-diverging
#amphioxus
, Asymmetron lucayanum! There is a long and twisty story behind this work, which also explains the username choice of the lab PI
@iamphioxus.bsky.social
. 😀
@pnas.org
www.pnas.org/doi/10.1073/...
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Insights into cephalochordate genome and gene evolution from the early-diverging amphioxus Asymmetron lucayanum | PNAS
Cephalochordates (amphioxus or lancelet) are considered as living proxies for ancestral chordates due to their key phylogenetic position and slow e...
https://www.pnas.org/doi/10.1073/pnas.2521280123
12 days ago
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11
4
reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
about 2 months ago
Honored to serve
@genomebiolevol.bsky.social
and the greater
@official-smbe.bsky.social
community! 🫡
add a skeleton here at some point
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reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
2 months ago
Honored to serve on the Yeast Genetics Meeting Program Committee of Evolution & Population Genetics. Welcome for meeting registration and abstract submission, especially on our Evolution & Population Genetics program!
genetics-gsa.org/yeast-2026/
@genetics-gsa.bsky.social
#Yeast26
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Homepage - Yeast Genetics Meeting 2026
Visit our website to learn more.
https://genetics-gsa.org/yeast-2026/
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First
#SMBE
meeting for our lab!Definitely a memorable experience. Already looking forward to the next one!
@official-smbe.bsky.social
#SMBE2025
8 months ago
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📣 Glad to share our genome paper on an early-diverged cephalochordate (amphioxus) species, Asymmetron lucayanum! By decoding & analyzing this genome in a comparative genomics framework, we know better now regarding the genome and gene evolution in cephalochordates.
www.biorxiv.org/content/10.1...
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The genome of the early diverged amphioxus, Asymmetron lucayanum, illuminates the evolution of genome architecture and gene repertoires in cephalochordates
Cephalochordates (amphioxus or lancelet) are considered as living proxies for ancestral chordates due to their key phylogenetic position and slow evolutionary rate. The genomes of living amphioxus thu...
https://www.biorxiv.org/content/10.1101/2025.07.21.665930v1
9 months ago
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reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
9 months ago
📣Our
#SMBE
2025 Symposium (No. 3) on Experimental Evolution will be held today (7.22, Tuesday) at 10:30 in Room 4, Building No. 8. An associated poster session will be held at 14:00 (poster number: S3-P01~P16). Welcome to join! let's study evolution in action! 🥳 🎉
@official-smbe.bsky.social
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reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
10 months ago
Welcome to attend our SMBE2025 Symposium on Experimental Evolution. Co-organized by Dao-Qiong Zheng, @jingli-0512.bsky.social and myself.
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📢 3 Postdoc positions available in
@evomicslab.bsky.social
targeting on genome instability evolution of both yeast and human genomes. Both computational genomics and experimental genomics backgrounds are welcome! 🧬🧑💻🧪 For more information, see
evomicslab.org
or send me a message!
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Evomics Lab – Exploring Omics in the Light of Evolution
https://evomicslab.org
11 months ago
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Glad to see the copy-edited version of our VRPG paper formally published in the latest issue of
@genomeresearch.bsky.social
! We developed VRPG as a novel visualization framework for intuitively exploring pangenome graphs in a linear-reference-projected context.
genome.cshlp.org/content/35/2...
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Interactive visualization and interpretation of pangenome graphs by linear reference–based coordinate projection and annotation integration
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
https://genome.cshlp.org/content/35/2/296.full
about 1 year ago
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reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
about 1 year ago
📢📢📢 The FINAL COUNT DOWN for the extended abstract submission deadline of
#SMBE2025
! Please submit your abstract by 23:59 (GMT +8) of February 15, 2025 [Saturday]! And shout out again for our symposium on Experimental Evolution ! 🎉🎉🎉 @OfficialSMBE
#LTEE
#ExperimentalEvolution
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📢🧬Proud to announce our 1st work on pangenome graphs is early online
@genomeresearch.bsky.social
! Here we developed an interpretative visualization framework for pangenome graphs named VRPG, which seamlessly bridges the graph and linear genomics world.
genome.cshlp.org/content/earl...
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Interactive visualization and interpretation of pangenome graphs by linear-reference-based coordinate projection and annotation integration
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
https://genome.cshlp.org/content/early/2025/01/13/gr.279461.124.abstract
about 1 year ago
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reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
about 1 year ago
📢 2nd-round abstract submission call for the 2025 @OfficialSMBE annual meeting in
#Beijing
. Where:
smbe2025.scimeeting.cn/en/web/index...
When: now - 2025/01/30. Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!!
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reposted by
Evomics Lab
Jia-Xing Yue (岳家兴)
over 1 year ago
📣 ⚠️👀Attn: The abstract submission for the
#SMBE2025
meeting in Beijing
@official-smbe.bsky.social
is open now! Submission site:
smbe2025.scimeeting.cn/en/web/index...
Submission Deadline: 2025.01.30 Welcome for all abstract submissions, especially for our Experimental Evolution Symposium !!!
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Welcome to join our dedicated symposium on Experimental Evolution for the @MolBioEvol 2025 Beijing Meeting! See you in Beijing!
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over 1 year ago
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The copy-edited version of our NanoTrans paper has been recently published @JGenetGenomics ! Here we developed an all-in-one pipeline for comprehensive data analysis for
@nanoporetech.com
direct-RNA sequencing (#DRS).
www.sciencedirect.com/science/arti...
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NanoTrans: an integrated computational framework for comprehensive transcriptome analysis with nanopore direct RNA sequencing
Nanopore direct RNA sequencing (DRS) provides the direct access to native RNA strands with full-length information, shedding light on rich qualitative…
https://www.sciencedirect.com/science/article/pii/S1673852724001838
over 1 year ago
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Excited to introduce the ScRAPdb work that we recently published at Nucleic Acids Research, in which we assembled a
#pangenome
x
#multi-omics
database for
#yeast
. This is one step forward for a pan-multi-omics understanding of genome & trait evolution. Read more >
academic.oup.com/nar/advance-...
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ScRAPdb: an integrated pan-omics database for the Saccharomyces cerevisiae reference assembly panel
Abstract. As a unicellular eukaryote, the budding yeast Saccharomyces cerevisiae strikes a unique balance between biological complexity and experimental tr
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae955/7848847
over 1 year ago
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