Mehdi Jafarnejad
@rnanomad.bsky.social
📤 163
📥 200
📝 30
mRNA translation & RNA biology.... Principal Investigator @QubPGJCCR.
https://jafarnejad-lab.com
pinned post!
We have a new preprint, led by
@pharrissnell.bsky.social
& (former) postdoc Parisa Naeli. We report a chordate-specific mechanism, mediated by 2 prologue RBPs ZC3H7A/B, that links codon usage to mRNA translation/stability. Huge thanks to our amazing collaborators!
www.biorxiv.org/content/10.1...
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Codon-dependent regulation of mRNA translation and stability by ZC3H7A and ZC3H7B RNA-binding proteins
Decelerated translation elongation caused by non-optimal codons can reduce mRNA stability through codon optimality-mediated mRNA degradation. A key element of this process is the coupling of sensing t...
https://www.biorxiv.org/content/10.1101/2025.04.21.649502v1
7 months ago
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We’ll soon be advertising a postdoc position (3 years) to study how mRNA-specific translational regulation shapes the innate immune system, in collaboration with
@alf-castello.bsky.social
. The formal ad will be out soon but get in touch if you’d like an informal chat!
#RNASky
6 days ago
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reposted by
Mehdi Jafarnejad
Fiamma Salerno
15 days ago
🚨 New paper alert!! RNA-binding proteins ZFP36L1 & ZFP36L2 act as guardians of genome stability in fast-dividing germinal center B cells. A new mechanism showing how post-transcriptional control keeps our immune cells in check!
#RNA
#Bcells
#GenomeStability
www.science.org/doi/10.1126/...
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RNA binding proteins control the G2-M checkpoint of the germinal center B cell
Germinal center B cells rely on ZFP36L1 and ZFP36L2 to control cell division and avoid replication stress that leads to apoptosis.
https://www.science.org/doi/10.1126/sciimmunol.adu3718
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Come and join us at Queen’s University Belfast via these tenure-track independent fellowships.
www.qub.ac.uk/Research/fel...
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Our Illuminate Global Challenges Fellowships | Research | Queen's University Belfast
https://www.qub.ac.uk/Research/fellowships-at-queens/fellowship-academy/illuminate-fellowship/
21 days ago
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reposted by
Mehdi Jafarnejad
Josh Mendell
about 1 month ago
Colliding ribosomes are potent signals of cellular stress. But do cells use ‘programmed’ ribosome collisions to regulate gene expression? I’m excited to present a new story from my lab led by Frederick Rehfeld(
@fred-rehfeld.bsky.social
) which revealed that the answer is YES! Read on to find out how👇
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Oxidative stress sensing by the translation elongation machinery promotes production of detoxifying selenoproteins
Selenocysteine, incorporated into polypeptides at recoded termination codons, plays an essential role in redox biology. Using GPX1 and GPX4, selenoenzymes that mitigate oxidative stress, as reporters,...
https://www.biorxiv.org/content/10.1101/2025.10.13.682107v1
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@alf-castello.bsky.social
& I are inviting applications for a competitive PhD studentship to study the mechanisms of translational regulation of the host response to RNA virus infections. The student will be based at Uni. Glasgow. Please spread the word.
#RNASky
www.gla.ac.uk/postgraduate...
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University of Glasgow - Postgraduate study - Centres for Doctoral Training - NorthWest Biosciences - Our Projects - Understanding Pathogens, from Molecules to Phenotypes - Alfredo Castello
https://www.gla.ac.uk/postgraduate/doctoraltraining/northwestbio/projects/pathogens/alfredocastello/
about 2 months ago
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reposted by
Mehdi Jafarnejad
Markus Hafner
about 2 months ago
www.biorxiv.org/content/10.1...
Delighted to share the story of two germline RBPs - one with little (DND1) and one with no (NANOS3) intrinsic sequence-specificity - that together build a continuous RNA binding surface recognizing a 7-mer (AUGAAUU) in target mRNA 3’UTRs, leading to deadenylation.
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The DND1-NANOS3 complex shapes the primordial germ cell transcriptome via a heptanucleotide sequence in mRNA 3'UTRs
The RNA-binding proteins DND1 and NANOS3 are essential for primordial germ cell survival. Their co-immunoprecipitation and overlapping loss-of-function phenotypes suggest joint function, yet how they ...
https://www.biorxiv.org/content/10.1101/2025.09.25.678639v1
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Amazing paper & very cool mechanism!
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about 2 months ago
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Looking forward to a few days of exciting discussions at the
#EMBLProtein
synthesis and translational control meeting
www.embl.org/about/info/c...
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Protein synthesis and translational control
https://www.embl.org/about/info/course-and-conference-office/events/trc25-01/
3 months ago
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reposted by
Mehdi Jafarnejad
Niladri Sinha
3 months ago
We have an opening for a Postdoctoral Fellow to join us in exploring fundamental questions at the interface of protein synthesis defects and stress-responsive signaling pathways.
utah.peopleadmin.com/postings/187...
#RNAsky
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Post Doc Res Assoc
Postdoc with a primary duty consisting research-related work. Required to meet FLSA threshold to be paid on a salaried basis, otherwise employment record will convert to hourly.
https://utah.peopleadmin.com/postings/187898
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The Svedberg unit!
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4 months ago
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FMRP represses translation by competing with eIF4G1 for binding to cap-bound eIF4E
www.sciencedirect.com/science/arti...
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FMRP drives mRNP targets into translationally silenced complexes
Fragile X syndrome (FXS) results from a deficiency of the ubiquitously expressed RNA-binding protein fragile X protein (FMRP). While FMRP-mediated tra…
https://www.sciencedirect.com/science/article/abs/pii/S109727652500512X
4 months ago
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Few places can compete with the drama of Scottish landscape. Now imagine that along with some great science!
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5 months ago
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Looking forward to a great lineup of speakers and posters. And the icing on the cake is that the venue is literally a stone’s throw from Arthur’s Seat.
#TLUK2025
,
#RNASky
#RNA
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5 months ago
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reposted by
Mehdi Jafarnejad
Andrew Blackford
6 months ago
We’re
#hiring
, please share! A fully funded
#postdoc
position is available in my lab to work on DNA damage response mechanisms. Please get in touch with your CV if you are interested; closing date: 27th June 2025. More details here:
candidate.hr-manager.net/ApplicationI...
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Postdoctoral Research Associate in the Blackford Group
A position as Postdoctoral Research Associate is available at the Department of Cellular and Molecular Medicine, in the group headed by Dr. Andrew Blackford. Th
https://candidate.hr-manager.net/ApplicationInit.aspx/?cid=1307&departmentId=19000&ProjectId=164280&MediaId=5&SkipAdvertisement=false
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A challenging observation about the GRB10-interacting GYF protein 2 (GIGYF2), linked to autism and the antiviral innate immune response. Unlike its mouse homologue, the human GIGYF2 does not interact with GRB10!
www.life-science-alliance.org/content/8/9/...
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No evidence that human GIGYF2 interacts with GRB10: implications for human disease
GIGYF2 (growth factor receptor–bound protein 10 [GRB10]-interacting GYF [glycine–tyrosine–phenylalanine] protein 2) reduces mRNA stability and translation via microRNAs, ribosome quality control, and ...
https://www.life-science-alliance.org/content/8/9/e202503334
5 months ago
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reposted by
Mehdi Jafarnejad
Manolis Maragkakis
6 months ago
🚨 We’re looking for a curious mind to join our lab at the NIH! Passionate about
#RNA
biology,
#MachineLearning
, and the
#genomics
of
#aging
? Interested in a postdoc or a PhD research visit at NIH? Let’s connect. 📩 DM or email for details!
#Bioinformatics
#AI
#ComputationalBiology
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reposted by
Mehdi Jafarnejad
Martin Turner
6 months ago
Opportunities if you're interested in immunity: we have projects on RNA binding proteins in B & T cell memory and effector responses.
marie-sklodowska-curie-actions.ec.europa.eu/calls/msca-p...
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MSCA Postdoctoral Fellowships 2025
MSCA Postdoctoral Fellowships enhance the creative and innovative potential of researchers holding a PhD and who wish to acquire new skills through advanced training, international, interdisciplinary ...
https://marie-sklodowska-curie-actions.ec.europa.eu/calls/msca-postdoctoral-fellowships-2025
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reposted by
Mehdi Jafarnejad
Julie
6 months ago
Delighted to share paper on translational activity of 80S monosomes across different tissues in 🪰 in
@narjournal.bsky.social
thanks to fabulous team Albert Blandy Tayah Hopes Elton Vasconcelos
@amy-turner96.bsky.social
Bulat Fatkhullin Michaela Agapiou Juan Fontana
academic.oup.com/nar/article/...
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Translational activity of 80S monosomes varies dramatically across different tissues
Abstract. Translational regulation at the stage of initiation can impact the number of ribosomes translating each mRNA molecule. However, the translational
https://academic.oup.com/nar/article/53/8/gkaf292/8126263
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ZNF574 is a quality control factor for defective ribosome biogenesis intermediates
www.sciencedirect.com/science/arti...
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ZNF574 is a quality control factor for defective ribosome biogenesis intermediates
Eukaryotic ribosome assembly is an intricate process that involves four ribosomal RNAs, 80 ribosomal proteins, and over 200 biogenesis factors that pa…
https://www.sciencedirect.com/science/article/pii/S1097276525003594?dgcid=author
7 months ago
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We have a competitive PhD studentship in my lab to study the role of mRNA translation and quality control mechanisms in cellular response to anti-cancer treatments in AML. Please share with your network and if interested apply through the link below.
#PhD
www.findaphd.com/phds/project...
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Improving AML treatment efficacy by targeting mRNA and protein quality control mechanisms at Queen’s University Belfast on FindAPhD.com
PhD Project - Improving AML treatment efficacy by targeting mRNA and protein quality control mechanisms at Queen’s University Belfast, listed on FindAPhD.com
https://www.findaphd.com/phds/project/improving-aml-treatment-efficacy-by-targeting-mrna-and-protein-quality-control-mechanisms/?p184866
7 months ago
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reposted by
Mehdi Jafarnejad
Edward Wallace
7 months ago
Translation UK abstract deadline is tomorrow!
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reposted by
Mehdi Jafarnejad
David Courtney
7 months ago
Checkout our review article at PLOS. Happy to see the thoughts of Stefano and myself on influenza virus RNA trafficking published in PLOS Pathogens a few days ago. A topic we are both greatly interested in.
dx.plos.org/10.1371/jour...
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Influenza A virus RNA localisation and the interceding trafficking pathways of the host cell
Viruses have evolved to efficiently navigate host cells to deliver, express, and replicate their genetic material. Understanding the mechanisms underlying viral RNA localisation is paramount to design...
https://dx.plos.org/10.1371/journal.ppat.1013090
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We have a new preprint, led by
@pharrissnell.bsky.social
& (former) postdoc Parisa Naeli. We report a chordate-specific mechanism, mediated by 2 prologue RBPs ZC3H7A/B, that links codon usage to mRNA translation/stability. Huge thanks to our amazing collaborators!
www.biorxiv.org/content/10.1...
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Codon-dependent regulation of mRNA translation and stability by ZC3H7A and ZC3H7B RNA-binding proteins
Decelerated translation elongation caused by non-optimal codons can reduce mRNA stability through codon optimality-mediated mRNA degradation. A key element of this process is the coupling of sensing t...
https://www.biorxiv.org/content/10.1101/2025.04.21.649502v1
7 months ago
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reposted by
Mehdi Jafarnejad
Edward Wallace
7 months ago
Translation meeting in Edinburgh (that I'm co-organising). Invited speakers include Allen Buskirk on his deep mechanistic work on prokarotic translation, Karen Merchante on plant ribosomal proteins and their effect, and the UK Translation community bringing their best science!
#RNAbiology
#ribosome
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reposted by
Mehdi Jafarnejad
Biochemical Society
7 months ago
Are you registered for the 30th Translation UK meeting? This year, our ever-popular conference is taking place at the incredible University of Edinburgh! Be quick - abstract submission and earlybird discount ends 30 April. 🧪 Register today:
www.eventsforce.net/biochemsoc/2...
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We really need to pay more attention to IDRs in RBPs and this is a great example of how much we are missing by not doing so!
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7 months ago
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Brilliant!
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8 months ago
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Yet another study showing how changes in RNA modifications & metabolism contribute to mechanisms-of-action of a widely used chemotherapeutic drug. Something that is, unfortunately, still being discounted by the wider cancer research community as a mere afterthought!
academic.oup.com/nar/article/...
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NAIL-MS reveals tRNA and rRNA hypomodification as a consequence of 5-fluorouracil treatment
Abstract. Recent studies have investigated RNA modifications in response to stressors like chemical agents, including the anticancer drug 5-fluorouracil (5
https://academic.oup.com/nar/article/53/4/gkaf090/8041998
9 months ago
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Cellular responses to RNA damage: Cell Such a great and timely review for a topic that remained under-explored for such a long time but has attracted a lot of attention in the last few years. The field is now moving in leaps and bounds.
#RNAsky
www.cell.com/cell/fulltex...
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Cellular responses to RNA damage
RNA plays a central role in protein biosynthesis and performs diverse regulatory and catalytic functions, making it essential for all processes of life. Like DNA, RNA is constantly subjected to damage...
https://www.cell.com/cell/fulltext/S0092-8674%2825%2900034-0
9 months ago
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reposted by
Mehdi Jafarnejad
Jonathan Eisen
9 months ago
Attention Attention Attention If anyone knows clinicians or patients who have knowledge of pediatric patients with the very rare cancer interdigitating dendritic cell sarcoma (IDCS) or other (non-LCH) dendritic or histiocytoc sarcomas please contact Sri
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This is as perfect a place & project combination for postdoc training as it could get.
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10 months ago
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Sharing this from last year, just to test & celebrate the addition of
@bsky.app
share button to
@science.org
, hopefully followed by other journals! Repression of mRNA translation initiation by GIGYF1 via disrupting the eIF3-eIF4G1 interaction | Science Advances
www.science.org/doi/10.1126/...
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Repression of mRNA translation initiation by GIGYF1 via disrupting the eIF3-eIF4G1 interaction
GIGYF1 represses translation of target mRNAs by disrupting the eIF3-eIF4G1 interaction in the preinitiation complex.
https://www.science.org/doi/10.1126/sciadv.adl5638?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
10 months ago
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Neoepitopes arising from W>F substitution present shared and highly expressed immunogenic targets with the potential to overcome current limitations in adoptive T cell therapy.
www.cell.com/immunity/ful...
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Adoptive T cell therapy targeting an inducible and broadly shared product of aberrant mRNA translation
Interferon γ secretion by activated T cells alters the immunopeptidome landscape of cancer cells, enriching for W>F substitutant epitopes. Champagne et al. demonstrate that these induced neoepitopes are widespread, shared between cancer types, and are amenable to adoptive T cell therapy to enhance the efficiency of conventional immunotherapeutic approaches.
https://www.cell.com/immunity/fulltext/S1074-7613(24)00568-5?dgcid=raven_jbs_aip_email
11 months ago
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Here is a clever way to stop the next coronavirus in its tracks…
www.nature.com/articles/s41...
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Small-molecule inhibition of SARS-CoV-2 NSP14 RNA cap methyltransferase - Nature
The development of a first-in-class non-covalent small-molecule inhibitor of SARS-CoV-2 replication that targets the viral guanine-N7 methyltransferase NSP14 is reported.
https://www.nature.com/articles/s41586-024-08320-0
11 months ago
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reposted by
Mehdi Jafarnejad
René Ketting
11 months ago
We are looking for new group leaders. If RNA is your thing, and/or computational biology and you want to start your own group, check out these links. Feel free to contact me about these! And, please help me spread this. Thanks!
www.imb.de/jobs/jobdeta...
www.imb.de/jobs/jobdeta...
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Jobdetail
IMB Mainz
https://www.imb.de/jobs/jobdetail/research-group-leader-in-rna-biology
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reposted by
Mehdi Jafarnejad
Simon Bekker-Jensen lab
11 months ago
⚡️Now online⚡️: Our review on how ZAKa and
#ribosomes
regulate cell death when things go bad ☠️ 🧪
@cellpress.bsky.social
@annaconstancevind.bsky.social
👏 ⬇️
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reposted by
Mehdi Jafarnejad
John Prensner
11 months ago
Oh snap. Those are fighting words. Trying to clean out the swamp of bad data. 🧹🧹🧹
www.biorxiv.org/content/10.1...
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Chasing non-existent microRNAs in cancer
MicroRNAs (miRNAs) are important regulators of gene expression whose dysregulation is widely linked to tumourigenesis, tumour progression and Epithelial-Mesenchymal Transition (EMT), a developmental p...
https://www.biorxiv.org/content/10.1101/2024.12.05.626946v1?rss=1
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Nuclear RBPs moonlighting in the cytoplasm as part of the host response to Sindbis virus. Another beautiful work by Alfredo Castelo’s group. I’m struggling to keep up with reading all the amazing papers they’ve published in the last few months.
www.cell.com/molecular-ce...
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Alphavirus infection triggers selective cytoplasmic translocation of nuclear RBPs with moonlighting antiviral roles
Kamel et al. apply complementary approaches to elucidate the composition of Sindbis virus ribonucleoproteins. They identified a subset of nuclear proteins that selectively translocate to the cytoplasm, interact with viral RNA, and suppress virus infection. Among them, U2 snRNP emerges as a ribonucleoprotein complex with moonlighting antiviral activity.
https://www.cell.com/molecular-cell/fulltext/S1097-2765(24)00920-1
12 months ago
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reposted by
Mehdi Jafarnejad
Olivier Namy 🧬🧪
12 months ago
It’s a great pleasure to see our work published in
@pnas.org
. It has been a fantastic collaboration with Virginie Marcel from the
#CRCL
. Let me to highlight the most important points of the work. (1/2)
www.pnas.org/doi/10.1073/...
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2408114121
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reposted by
Mehdi Jafarnejad
Sara MaciasRNA
12 months ago
RECRUITING-PhD student to study the role of RNA-binding proteins in antiviral defence during early development.
#crispr
#iclip
#omics
Interested candidates, please email a full CV and a statement of interest. Open to both UK and overseas
www.findaphd.com/phds/project...
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Antiviral defence during early development at University of Edinburgh on FindAPhD.com
PhD Project - Antiviral defence during early development at University of Edinburgh, listed on FindAPhD.com
https://www.findaphd.com/phds/project/antiviral-defence-during-early-development/?p179152
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Another cool paper from Agami group. Chemotherapy induces ribosome collision, followed by presentation of the aberrant peptide on MHCs and triggering T-cell response.
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Chemotherapeutic agents and leucine deprivation induce codon-biased aberrant protein production in cancer
Abstract. Messenger RNA (mRNA) translation is a tightly controlled process frequently deregulated in cancer. Key to this deregulation are transfer RNAs (tR
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae1110/7908795?login=false
12 months ago
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reposted by
Mehdi Jafarnejad
Simon Bekker-Jensen lab
12 months ago
Time for our first post here 🥳 Our latest paper is online 🙌 We show that UV activates the ribotoxic stress response, which causes inflammation, cell death and thickening in skin. Read about a role for the RSR separate from DNA damage signaling in response to sunburn: ✨☀️
www.cell.com/molecular-ce...
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The ribotoxic stress response drives acute inflammation, cell death, and epidermal thickening in UV-irradiated skin in vivo
The acute skin reaction to sunburn, encompassing keratinocyte cell death, inflammation, and epidermal thickening, has traditionally been ascribed to DNA damage responses. Using a mouse model deficient...
https://www.cell.com/molecular-cell/fulltext/S1097-2765(24)00884-0
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Please check out our paper in collaboration with Nahum Sonenberg's group. We show how some DNA viruses co-opt the host cell translation machinery to repress the cGAS/STING response. TLDR; the cap-binding protein 4EHP represses the cGAS mRNA translation.
#RNA
,
#RNASky
www.pnas.org/doi/10.1073/...
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2413018121
12 months ago
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reposted by
Mehdi Jafarnejad
Sendoel Lab
12 months ago
How does aging alter the translational landscape of stem cells and how do these changes impact their regenerative capacity? Here we developed an in vivo single-cell ribosome profiling strategy to monitor translational landscapes of the mouse epidermis 1/6
www.biorxiv.org/content/10.1...
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I am just going to plug-in the latest paper from our lab, wherein we show that treatment with the chemotherapy agent 5-Fluorouracil (5-FU) induces ribosome collision and that RQC pathway mitigates the 5FU-induced cytotoxicity.
#RNA
,
#RNASky
,
#Cancer
academic.oup.com/nar/article/...
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Ribosome Quality Control mitigates the cytotoxicity of ribosome collisions induced by 5-Fluorouracil
Abstract. Ribosome quality control (RQC) resolves collided ribosomes, thus preventing their cytotoxic effects. The chemotherapeutic agent 5-Fluorouracil (5
https://academic.oup.com/nar/article/52/20/12534/7798793
12 months ago
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reposted by
Mehdi Jafarnejad
Danny IncaRNAto
about 1 year ago
Fellow
#RNA
lovers, please repost 🙏: 2 ERC-funded Post-doc positions are available in our lab to investigate
#RNA
structural ensemble and their dynamics in living cells. Application link:
t.co/pYJ3H3j705
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https://www.rug.nl/about-ug/work-with-us/job-opportunities/?details=00347-02S000B06P
https://t.co/pYJ3H3j705
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reposted by
Mehdi Jafarnejad
Victor Javier
about 1 year ago
Have a look to our last preprint. 🧪🔬 ELOVL6 as a therapeutic target in c-MYC driven
#PDAC
.
www.biorxiv.org/content/10.1...
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ELOVL6 as a Therapeutic Target: Disrupting c-MYC-Driven Lipid Metabolism to Enhance Chemotherapy in Pancreatic Cancer
Pancreatic ductal adenocarcinoma (PDAC) is a devastating disease, marked by a survival rate of only 12%. Consequently, the exploration of novel therapeutic strategies becomes a critical clinical imper...
https://www.biorxiv.org/content/10.1101/2024.11.11.622928v1
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reposted by
Mehdi Jafarnejad
Willem van Schaik
about 1 year ago
To celebrate the 125th anniversary of the University of Birmingham, we are recruiting 100 Anniversary Fellows and 25 Anniversary Chairs
fellowsandchairs.birmingham.ac.uk
If you are interested to join our community of researchers in infection, inflammation and immunology, please DM me!
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125th Anniversary Fellows and Chairs | University of Birmingham
This is 125 years of NobelPrize-winning research.This is your opportunity to become one of our 125th Anniversary Fellows and Chairs.
https://fellowsandchairs.birmingham.ac.uk/
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reposted by
Mehdi Jafarnejad
Chris H. Hill
about 1 year ago
We have a fully-funded 4 year PhD position in the lab, for October 2025 entry. Both UK and international students are eligible to apply. Please share and get in touch if you're interested 🧬🧪🦠
www.findaphd.com/phds/project...
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MRC DiMeN Doctoral Training Partnership: Understanding molecular mechanisms of protein-primed genome replication in enteroviruses at University of York on FindAPhD.com
PhD Project - MRC DiMeN Doctoral Training Partnership: Understanding molecular mechanisms of protein-primed genome replication in enteroviruses at University of York, listed on FindAPhD.com
https://www.findaphd.com/phds/project/mrc-dimen-doctoral-training-partnership-understanding-molecular-mechanisms-of-protein-primed-genome-replication-in-enteroviruses/?p176450
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This feels like a jailbreak! Anyways, hope to find some of the old and many more new connections here!
about 1 year ago
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