Sorek Lab
@soreklab.bsky.social
📤 3628
📥 268
📝 150
The Sorek Lab Weizmann Institute of Science, Israel
https://www.weizmann.ac.il/molgen/Sorek/
reposted by
Sorek Lab
Kevin Forsberg
2 days ago
Humans and bacteria share strategies to defend against viruses. We wondered: could they use each other's genes? Yes, both can! Bacteria can use human immune genes to defend against phages AND Human cells can use bacterial genes for viral defense.
www.biorxiv.org/content/10.6...
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Bacterial and human exonucleases mediate interkingdom antiviral immunity
All kingdoms of life have developed strategies to limit viral infection. In humans, interferons induce a suite of antiviral factors that collectively provide immunity. Some human immune genes are homo...
https://www.biorxiv.org/content/10.64898/2026.06.30.735675v1
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Sorek Lab
Kranzusch Lab
2 days ago
New preprint from
@courtneyrsantos.bsky.social
and
@kvnforsberg.bsky.social
discovering human ISGs are sufficient to block phage replication in bacteria! Amazing to see such strong phenotypes especially against RNA phages:
www.biorxiv.org/content/10.6...
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Sorek Lab
Nancy Moran
3 days ago
A step forward in discovering Buchnera's key to the aphid's heart, published today! Thanks to Jerry Maeda and other authors--a great team -- and to the helpful reviewers
#SymbioSky
doi:
doi.org/10.1038/s415...
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A secreted endosymbiont protein essential for colonizing host cells - Nature
SyeA was present in the Buchnera ancestor, is secreted into the host cytoplasm, is homologous to secreted effectors of bacterial pathogens and is essential for Buchnera transmission.
https://doi.org/10.1038/s41586-026-10711-4
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Sorek Lab
bioRxiv Microbiology
3 days ago
Bacterial and human exonucleases mediate interkingdom antiviral immunity
https://www.biorxiv.org/content/10.64898/2026.06.30.735675v1
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Sorek Lab
Institut Pasteur | 130 years of biomedical research
4 days ago
Congratulations to Aude Bernheim (
@audeber.bsky.social
), elected EMBO Member 2026 🎉 Her work on bacterial immunity is reshaping how we understand immune systems across all life forms — from bacteria to humans.
@embo.org
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Sorek Lab
Typas Lab
6 days ago
How can we harness the vast functional diversity of microbes on our planet? Join us at EMBL Heidelberg from 8–10 December 2026 to hear about ongoing efforts to decode gene function and organisation in human gut microbes, and to present your own research.
www.embl.org/about/info/c...
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Nature Microbiology
8 days ago
Out Now! END nucleases are antiphage defence systems targeting multiple phages with modified genomes
#MicroSky
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END nucleases are antiphage defence systems targeting multiple phages with modified genomes
Nature Microbiology, Published online: 26 June 2026; doi:10.1038/s41564-026-02407-2The END nuclease targets eight phage families with at least ten different known DNA modifications, but not unmodified DNA. Its specificity is dictated by the C-terminal iEndoIII domain. To combat END, modified phages encode direct-binding inhibitors.
https://go.nature.com/4uXewKc
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Sorek Lab
Sean Gibbons 🦠💩
10 days ago
Voices of microbiome researchers in an artificial intelligence era
@natmicrobiol.nature.com
@atinsharma.bsky.social
@natureportfolio.nature.com
www.nature.com/articles/s41...
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Voices of microbiome researchers in an artificial intelligence era - Nature Microbiology
Nature Microbiology asked members of the Global Grants for Gut Health Colloquium about the impact artificial intelligence is having on their microbiome research.
https://www.nature.com/articles/s41564-026-02359-7
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Sorek Lab
Emmanuele Severi
24 days ago
#microsky
#phagesky
#phage
#synbio
www.nature.com/articles/s41...
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Synthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infection - Nature Communications
Bacterial defense systems act as barriers to phage infection and plasmid transformation. Here, Garb et al. designed synthetic proteins that disable bacterial defense systems, enabling phages to infect...
https://www.nature.com/articles/s41467-026-74301-8
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Sorek Lab
Erin Huiting
12 days ago
From my time with
@jbdsf.bsky.social
: Our latest CBASS story is now published! ‘CBASS’ is the ancestral origin of anti-viral cGAS immunity and encoded in diverse bacteria. For the first time, we show that CBASS enables cell survival (vs cell death) to protect bacteria from phage infection. More ⬇️
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Sorek Lab
Molecular Cell
15 days ago
The DdmDE defense system eradicates plasmids by target-centered bidirectional ssDNA loop extrusion and site-specific cleavage
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The DdmDE defense system eradicates plasmids by target-centered bidirectional ssDNA loop extrusion and site-specific cleavage
Yang et al. reveal a dynamic DdmDE-mediated plasmid clearance pathway. Transient DNA bubbles permit promiscuous DdmE binding, while target specificity arises from slower dissociation at matched sites. DdmE then recruits a DdmD dimer to drive target-centered, bidirectional dsDNA unwinding. Free DdmD subsequently coats extruded ssDNA to enable site-specific endonucleolytic cleavage.
http://dlvr.it/TT6wh6
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Preprint: Plant pathogens cleave 2’cADPR to suppress TIR immune signaling Inspired by knowledge on how phages inhibit bacterial immunity, we now show that disease-causing bacteria inhibit plant immunity in a similar way. A 🧵
www.biorxiv.org/content/10.6...
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Plant pathogens cleave 2'cADPR to suppress TIR immune signaling
Small molecules produced by TIR (Toll-interleukin-1 receptor) domains are essential for plant immune signaling. A central TIR-derived signal is 2'cADPR, a cyclic ADP-ribose (ADPR) molecule that is gen...
https://www.biorxiv.org/content/10.64898/2026.06.15.732069v1
18 days ago
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Sorek Lab
Osterman Ilya
18 days ago
More discoveries from the NAD world: plant pathogens cleave 2′cADPR to suppress the immune response! Congratulations to
@ohadroth.bsky.social
and colleagues 👏
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Sorek Lab
Ohad Roth
18 days ago
How do pathogens disarm plant immunity? We discovered a widespread strategy used by plant bacterial pathogens: they directly cleave a conserved immune signaling molecule produced by plant immune receptors.
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.06.15.732069v1.full.pdf
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Alex Crits-Christoph
22 days ago
This Visual-omics approach is kind of amazing: "We resolved each to sufficient resolution (2.8 and 3.6 Å) to predict the amino acid composition directly from the 3D electrostatic potential map"
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Sorek Lab
Jack Bravo
21 days ago
Very happy to share this preview article written by my postdoc Danny on exciting recent work from
@ostermanilya.bsky.social
and
@soreklab.bsky.social
. New bacterial immunity, phage countermeasures, and a double pun combo in the title.
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Sorek Lab
Cell Host & Microbe
22 days ago
NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back Preview of work IDing aRES, bacterial proteins that deplete cellular NAD+, generating products that cannot be utilized by phage NAD+ regeneration pathways
www.cell.com/cell-host-mi...
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NAD to the bone: How bacteria put phages under aRES-t … and how phages fight back
In this issue of Cell Host & Microbe, Osterman et al. discover aRES, a new family of bacterial immune proteins that deplete cellular NAD+, generating cleavage products that cannot be utilized by canon...
https://www.cell.com/cell-host-microbe/abstract/S1931-3128(26)00206-4
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Sorek Lab
Kranzusch Lab
22 days ago
This project starts with the surprising discovery that individual human ISGs (interferon stimulated genes) expressed in bacteria are sufficient to protect E. coli from phage infection. Human ISGs block phages as potently as native bacterial anti-phage defense systems!
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Sorek Lab
Kranzusch Lab
22 days ago
How do human cells defend against viruses?
@sgfern.bsky.social
discovers that human immune proteins named ISGs target ancient features of replication shared between animal and bacterial viruses – opening analysis of human immunity to the power of bacterial genetics
www.biorxiv.org/content/10.6...
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Sorek Lab
Sofya Garushyants
22 days ago
Our paper on the YprA family of helicases and their roles in bacterial defence is now out! We describe ARMADA, a defence system synergise with Druantia and show that both systems spread horizontally on a novel type of mobile genetic element that we call SPIDERs
www.sciencedirect.com/science/arti...
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YprA-family helicases provide the missing link between diverse prokaryotic immune systems
Bacteria and archaea possess an enormous variety of antiviral immune systems that often share homologous proteins and domains. YprA-family helicases a…
https://www.sciencedirect.com/science/article/pii/S1931312826002088
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Sorek Lab
Paul Rainey
22 days ago
Koonin & team dive deep into YprA-family defence systems that define “SPIDER” elements: satellite phage-like defence islands that overlap with the GIs we showed are transferred by jumbo phages. They're packed with ecologically relevant genes. The stuff that moves matters!
doi.org/10.1016/j.ch...
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Redirecting
https://doi.org/10.1016/j.chom.2026.05.015
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Sorek Lab
Ákos T Kovács
23 days ago
Bacterial cell division protein FtsZ complexes with a phage protein to activate bacterial immunity
@natmicrobiol.nature.com
from Michael Laub & Abel Garcia-Pino
www.nature.com/articles/s41...
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Bacterial cell division protein FtsZ complexes with a phage protein to activate bacterial immunity - Nature Microbiology
The activation of an antiphage defence system relies on host factors targeted by phages, a mechanism analogous to the way that eukaryotic innate immune systems detect pathogen-induced perturbations of...
https://www.nature.com/articles/s41564-026-02384-6
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Sorek Lab
The EMBO Journal
24 days ago
CapK is a bacterial DNA damage-activated kinase that phosphorylates transcriptional repressor CapS to control adjacently-encoded anti-phage immune pathway genes in response to a universal stress signal, DNA damage
@kevincorbett.bsky.social
and colleagues
link.springer.com/article/10.1...
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A DNA damage-activated kinase phosphorylates a transcriptional repressor to control bacterial immune pathway expression - The EMBO Journal
Bacteria encode numerous stress-response pathways that protect their hosts against both internal and external threats. A key question is how these pathways are regulated, especially anti-phage immune ...
https://link.springer.com/article/10.1038/s44318-026-00831-y
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Sorek Lab
Rafal Mostowy
25 days ago
Phage receptor-binding proteins are known for their LEGO-like modularity, but we still do not fully understand their evolutionary potential and how it shapes phage host range. Our new preprint examines this systematically in Klebsiella phages. 🔗
www.biorxiv.org/content/10.6...
Thread 🧵
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Sorek Lab
Christine Mayr
26 days ago
Finally out in @Cellcellpress! Proteins with long IDRs are prone to misfolding during protein synthesis. This is prevented by mRNA 3′UTRs that act as mRNA-based IDR chaperones.
www.cell.com/cell/fulltex...
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mRNA 3′ UTRs chaperone intrinsically disordered regions to control protein activity
Highly conserved mRNA 3′ UTRs act as co-translational chaperones for intrinsically disordered regions (IDRs), preventing inter-domain misfolding and enabling biogenesis of fully active proteins.
https://www.cell.com/cell/fulltext/S0092-8674%2826%2900576-3
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Sorek Lab
bioRxiv Microbiology
29 days ago
Balancing of immune activation and suppression during phage infection
https://www.biorxiv.org/content/10.64898/2026.06.04.730250v1
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Sorek Lab
bioRxiv Microbiology
28 days ago
OGG1-Binding to Oxidized Guanine Base in Viral DNA Overcomes Epstein-Barr Virus Latency
https://www.biorxiv.org/content/10.64898/2026.06.05.728896v1
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Sorek Lab
Anthropic {bot}
29 days ago
New Anthropic Science Blog: Making Claude a chemist. To manipulate a molecule, chemists first need to understand its structure. Their main tool is NMR spectroscopy. We found Opus 4.7 matches—and on some tasks beats—dedicated NMR software. Read more:
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Making Claude a chemist
Anthropic is an AI safety and research company that's working to build reliable, interpretable, and steerable AI systems.
https://www.anthropic.com/research/making-claude-a-chemist
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Sorek Lab
Jesse Shapiro
30 days ago
Cheap and easy method for nanopore sequencing phage DNA directly from plaques. Proud of lab members Brenna and Patrick for doing this work *with absolutely no help from me* !!
www.nature.com/articles/s41...
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Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction - Scientific Reports
Scientific Reports - Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction
https://www.nature.com/articles/s41598-026-55253-x
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Our paper is out in Nature Microbiology: functional analysis of 80 phage sponges, revealing new sponges that inhibit bac immunity by binding the immune signals cCMP, cUMP and N7-cADPR Thanks to all coauthors and our collaborators at the Kranzusch Lab. Congrats Romi!
www.nature.com/articles/s41...
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about 1 month ago
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Sorek Lab
Cell Host & Microbe
about 1 month ago
Bacteria vs phage: new layers in NAD+ centric arms race aRES is bacterial protein that blocks phage infection by cleaving NAD+ into ADPR-1P & nicotinamide. Phages counter using NAD+ reconstitution pathway w/ADPR-1P & nicotinamide as substrates
www.cell.com/cell-host-mi...
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Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases
Osterman et al. describe a bacterial defense protein that, once triggered by the phage DNA polymerase, blocks infection by cleaving NAD+ into ADPR-1P and nicotinamide. They show how phages counter thi...
https://www.cell.com/cell-host-microbe/abstract/S1931-3128(26)00180-0
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Happy to see the paper out in Cell Host & Microbe. congratulations Ilya!
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about 1 month ago
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Sorek Lab
Osterman Ilya
about 1 month ago
Our aRES story is finally out 😀 Beyond what was reported in the preprint, we found that aRES is activated by direct binding of the phage DNA polymerase. Another NAD-degrading defense system — and multiple phage strategies to overcome it.
www.sciencedirect.com/science/arti...
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Sorek Lab
Miguel López Rivera
about 1 month ago
(1/6) Thrilled to share this story! In our preprint from my PhD in the
@kranzuschlab.bsky.social
, with help from the Hatfull lab and
@soreklab.bsky.social
, we discover RyDEP, a phage-encoded RyR-domain glycosidase that allows phages to evade Thoeris defense. Highlights below!
doi.org/10.64898/202...
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Sorek Lab
about 1 month ago
Excited to share this paper from
@yiechanglin.bsky.social
showing how lipids can move between bacterial membranes along the bridge like protein TamB. Also happy to be able to post the cool movie. 🎥🌟
#MDsimulations
#StructuralBiology
doi.org/10.1016/j.bp...
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Aude Bernheim
about 1 month ago
Great piece and cover
@science.org
about how our field is uncovering the evolutionary and mechanistic connections between bacterial and eukaryotic immunity !
www.science.org/content/article/ancient-wars-between-microbes-gave-us-key-immune-defenses
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Sorek Lab
Sternberg Lab
about 1 month ago
1/8 🚨 New preprint from the
@sternberglab.bsky.social
&
@martinjinek.bsky.social
labs! CRISPR-associated transposases (CASTs) insert large DNA cargoes at precise genomic locations — no double-strand breaks needed.
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A nice piece at
@science.org
covers the exploding field of bacterial immunity, and how it led to the understanding that components of the human immune system evolved from bacterial defenses against phage
www.science.org/content/arti...
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Ancient wars between microbes gave us key immune defenses
A better understanding of battles between bacteria and viruses could inspire new medicines
https://www.science.org/content/article/ancient-wars-between-microbes-gave-us-key-immune-defenses
about 1 month ago
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Sorek Lab
Cell Host & Microbe
about 2 months ago
Predicting phage anti-defenses that shoot the messenger Mahler &
@yuping-li.bsky.social
highlight
@science.org
work developing a structure-guided approach to identify phage proteins counteracting bacterial nucleotide signaling defenses using metagenomic data.
www.cell.com/cell-host-mi...
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Predicting phage anti-defenses that shoot the messenger
Locked in a constant arms race, bacteria and their phage predators have evolved various defenses and counter-defenses. Compared to the numerous identified defenses, phage-encoded counter-defenses are ...
https://www.cell.com/cell-host-microbe/abstract/S1931-3128(26)00170-8
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Sorek Lab
Jakob T Rostøl
about 2 months ago
Like a prophage being awakened from its slumber, the phage field has seen a lot of renewed activity during the last decade. Check out our new
@natrevmicro.nature.com
review on the temperate phage life cycle here to stay up-to-date 🧫🦠
www.nature.com/articles/s41...
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Revisiting the life cycle of temperate phages - Nature Reviews Microbiology
The life cycle of temperate bacteriophages involves lytic or lysogenic cycles and has historically served as a model for studying genetic regulation. This Review provides an updated overview of these ...
https://www.nature.com/articles/s41579-026-01318-7
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Sorek Lab
Shicheng Guo
about 2 months ago
Phage encodes a sponge protein blocking bacterial TIR-Caspase immune signaling, inhibiting type IV Thoeris. Discovered through phage mating assays. PMID:41968157, Nat Commun 2026, @NatureComms
https://doi.org/10.1038/s41467-026-71527-4
#Medsky
#Pharmsky
#RNA
#ASHG
#ESHG
🧪
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A phage-encoded sponge protein suppresses bacterial TIR-Caspase immune signaling | Nature Communications
Triggering immune response through generation of signal molecules is a common immune strategy across all domains of life. In the bacterial type IV Thoeris anti-phage system, a Toll/interleukin-1 receptor (TIR)-domain protein produces adenosine 5’-diphosphate-cyclo[N7:1”]-ribose (N7-cADPR) as the immune signal to activate a Caspase-like effector. Here, we identified an inhibitor of type IV Thoeris through a phage mating assay that allows a sensitive phage to acquire anti-defense genes from related resistant phages. The inhibitor (hereafter TadIV-1) functions as a sponge that sequesters the N7-cADPR signal to inhibit Caspase activation. Structural analyses of TadIV-1 indicate a distinctive signal binding mechanism, wherein the binding pocket comprises its N-terminal flexible loop. In addition, phages lacking TadIV-1 can escape type IV Thoeris sensing through mutation in the capsid vertex protein. Collectively, this work expands the phage anti-defense arsenal with a unique immune signal s
https://doi.org/10.1038/s41467-026-71527-4
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Interesting!
add a skeleton here at some point
about 2 months ago
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Sorek Lab
Igor Ulitsky
about 2 months ago
Now out
@natbiotech.nature.com
! Do lncRNAs commonly bind 1000s of genomic sites? Maybe they do, but the dozens of studies that report genomic binding maps of lncRNAs are deeply flawed, with probes binding suprious DNA sites rather than RNA-bound ones.
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Sorek Lab
anil oza
about 2 months ago
wow — the preprint host, arxiv, is banning authors for a year if they submit papers with hallucinated citations 🤖
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Sorek Lab
Luuk Loeff
about 2 months ago
Together, our data support a model in which DruH processes replication-associated forked DNA structures to generate 5′ overhangs that trigger activation of the autoinhibited helicase–nuclease DruE, enabling selective DNA degradation during phage defense.
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Sorek Lab
Luuk Loeff
about 2 months ago
Happy to share our latest pre-print on the Druantia defense system. We find that Type III Druantia uses a cooperative helicase-nuclease mechanism to sense and degrade replication-associated forked DNA structures.
www.biorxiv.org/content/10.6...
A🧵
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https://www.biorxiv.org/content/10.64898/2026.05.13.724313v1
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Sorek Lab
Aritz Roa-Eguiara
about 2 months ago
Druantia phage defence system by Haidai and collaborators out as preprint! Always interesting to know more about such interesting (and often difficult) systems. Glad to have played a small role on this and congrats to all the authors
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Sorek Lab
bioRxiv Synthetic Biology
2 months ago
Bridge recombinase enables versatile rewriting of bacterial genomes
https://www.biorxiv.org/content/10.64898/2026.04.29.721476v1
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Sorek Lab
Sternberg Lab
about 2 months ago
1/9 New preprint from the Sternberg Lab in collaboration with the Nishimasu Lab! We uncover how the DRT3 antiphage immune system pairs two reverse transcriptases, one RNA-templated and one protein-templated, to build a double-stranded DNA effector.
doi.org/10.64898/202...
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Mart Krupovic
about 2 months ago
With Eugene Koonin, we wrote a rather comprehensive review on the origin, evolution and organization of the
#virosphere
. We describe all 10 viral realms and the logic behind them, and so much more. Check it out!
comptes-rendus.academie-sciences.fr/biologies/ar...
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