Ed Merkle
@edgarmerkle.bsky.social
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quantitative psychologist, open source enthusiast, recently working on R package blavaan
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Ed Merkle
Jonathan Templin
3 months ago
A new semester is upon us! This time, I’m teaching Structural Equation Modeling. Want to follow along? Here you go:
jonathantemplin.github.io/Structural-E...
and
www.youtube.com/playlist?lis...
#StatModeling
#SEM
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Structural Equation Modeling (Fall 2025; University of Iowa: PSQF 6249) – Structural Equation Modeling Fall 2025 (PSQF 6249)
https://jonathantemplin.github.io/Structural-Equation-Modeling-Fall-2025/
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Ed Merkle
Psychometric Society
7 months ago
Don’t miss out on short courses at IMPS 2025! We have 4 short courses to choose from.
www.psychometricsociety.org/imps2025-sho...
#IMPS2025
#Psychometrics
#QuantitativePsychology
#rstats
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Short Courses for IMPS 2025 - Psychometric Society
https://www.psychometricsociety.org/imps2025-short-courses
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Ed Merkle
Andreas Brandmaier
7 months ago
You want to fit structural equation models in Julia? No problem with the StructuralEquationModels.jl package. Ships with worked examples and tutorials on how to modify the objective function easily (e.g., adding a regularization penalty). Find our preprint here
osf.io/preprints/ps...
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Ed Merkle
Vincent Arel-Bundock
8 months ago
📚😅🎉 Yay!! I just submitted the complete manuscript of my upcoming book to the publisher! Learn to easily and clearly interpret (almost) any stats model w/ R or Python. Simple ideas, consistent workflow, powerful tools, detailed case studies. Read it for free @
marginaleffects.com
#RStats
#PyData
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Looks like an interesting paper:
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Almost Bayesian: The Fractal Dynamics of Stochastic Gradient Descent
We show that the behavior of stochastic gradient descent is related to Bayesian statistics by showing that SGD is effectively diffusion on a fractal landscape, where the fractal dimension can be accou...
https://doi.org/10.48550/arXiv.2503.22478
8 months ago
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Ed Merkle
Aki Vehtari
8 months ago
CmdStanR v 0.9.0 released! According to Andrew Johnson, this should make Windows installation easier plus many other improvements and bug fixes
discourse.mc-stan.org/t/cmdstanr-v...
#Bayesian
#MCMC
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CmdStanR: v0.9.0 Release
Hello all, I’m excited to announce that we have now released CmdStanR v0.9.0! This is a minor release, wrapping up several months of bugfixes, quality-of-life improvements, and updates to documentatio...
https://discourse.mc-stan.org/t/cmdstanr-v0-9-0-release/39183
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Ed Merkle
James Balamuta
9 months ago
Huzzah! Great news for psychometric software! Psychometrika now accepts software submissions under "Applications and Case Studies" AND software reviews in their expanded Review Section. This dual recognition elevates the status of programming in the field.
#psychometrics
#OpenScience
add a skeleton here at some point
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Here is a new post providing some intuition about the proportional odds restriction in ordinal regression models. Maybe you, or your LLM, will find it useful.
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The proportional odds restriction – Ed Merkle
Ordinal regression models often employ a proportional odds restriction, which roughly means that the effect of moving from one ordinal category to the next is constant. Here, we provide an example of ...
https://ecmerkle.github.io/cs/propodds.html
10 months ago
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Ed Merkle
Sean Pinkney
10 months ago
Fellow probabilistic programmers I came up with a parameterization for a Cholesky factor of correlation matrices that looks good. I'm asking to test and see if it works well for you
discourse.mc-stan.org/t/updated-ch...
#rstats
#statistics
#bayesian
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Updated cholesky corr parameterization testing
Hi everyone, I’m asking if people could test out this parameterization of the Cholesky factor of correlation matrices? From my tests on a macpro m1, it looks to be much faster and I can easily sample...
https://discourse.mc-stan.org/t/updated-cholesky-corr-parameterization-testing/38827?u=spinkney
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Ed Merkle
Vincent Arel-Bundock
10 months ago
{tinyplot} 0.3.0 is out! 🚨 It's a lightweight
#Rstats
📦 to draw beautiful and complex plots, using an ultra-simple and concise syntax. This is a massive release!
@gmcd.bsky.social
@zeileis.org
and I worked hard to add tons of new themes and plot types. Check it out!
grantmcdermott.com/tinyplot/
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Ed Merkle
Aki Vehtari
10 months ago
If you know simulation based calibration checking (SBC), you will enjoy our new paper "Posterior SBC: Simulation-Based Calibration Checking Conditional on Data" with Teemu Säilynoja,
@marvinschmitt.com
and
@paulbuerkner.com
arxiv.org/abs/2502.03279
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Ed Merkle
Psychometric Society
10 months ago
The Psychometric Society invites IMPS 2024 presenters to submit manuscripts to the 2024 Proceedings. Intent to Submit Deadline: February 14, 2025 Manuscript Deadline: March 21, 2025
www.psychometricsociety.org/imps2024-pro...
#psychometricsociety
#psychometrics
#quantitativepsychology
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Ed Merkle
Adrian Hill @ NeurIPS San Diego
10 months ago
You think Jacobian and Hessian matrices are prohibitively expensive to compute on your problem? Our latest preprint with
@gdalle.bsky.social
might change your mind!
arxiv.org/abs/2501.17737
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Ed Merkle
Clintin Davis-Stober
10 months ago
Now out in PNAS, we provide a conceptual framework for assessing replication decisions and replication reform. Do you view the scientific literature as a "book of truths" or a "book of conversations"?
www.pnas.org/doi/abs/10.1...
#philsci
#science
#SciSci
#Metascience
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/abs/10.1073/pnas.2401236121
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Ed Merkle
Psychometric Society
11 months ago
Call for Abstracts for IMPS 2025 The Psychometric Society Invites You to Submit an Abstract for IMPS 2025! The abstract submission portal is scheduled to open Jan 29, 2025 Please see the society website for details:
www.psychometricsociety.org/post/imps-20...
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IMPS 2025 Abstract Submission - Psychometric Society
Submission Deadline: February 28, 2025
https://www.psychometricsociety.org/post/imps-2025-abstract-submission
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Ed Merkle
Achim Zeileis
11 months ago
Our friend and colleague Fritz Leisch died in April last year. In a new contribution to The R Journal we honor Fritz and commemorate his many contributions to science in general and to the R community in particular.
#rstats
journal.r-project.org/articles/RJ-...
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Remembering Friedrich
This article remembers our friend and colleague Fritz Leisch (1968--2024) who sadly died earlier this year. Many of the readers of The R Journal will know Fritz as a member of the R Core Team and for ...
https://journal.R-project.org/articles/RJ-2024-001/
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Ed Merkle
about 1 year ago
I am so proud of the Psychometric Society having the courage to transition Psychometrika to Open Access. Practically all APCs are covered by TAs (see
bit.ly/3NiAy6T
) and for authors not covered will be waived! Support open science for everybody, send your best work to Psychometrika at
bit.ly/4eXTvYp
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New preprint with
@winterstat.bsky.social
and Ellen Fitzsimmons on ordinal factor analysis, where the latent variables are scaled so that they generally take values from 1 to # of ordered categories. The scaling is intuitive because it is what you use when you treat ordinal variables as continuous.
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Identification and Scaling of Latent Variables in Ordinal Factor Analysis
Social science researchers are generally accustomed to treating ordinal variables as though they are continuous. In this paper, we consider how identification constraints in ordinal factor analysis ca...
https://arxiv.org/abs/2501.06094
11 months ago
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Ed Merkle
Jarrett Byrnes
12 months ago
OK, here is a very rough draft of a tutorial for
#Bayesian
#SEM
using
#brms
for
#rstats
. It needs work, polish, has a lot of questions in it, and I need to add a references section. But, I think a lot of folk will find this useful, so....
jebyrnes.github.io/bayesian_sem...
(use issues for comments!)
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Full Luxury Bayesian Structural Equation Modeling with brms
https://jebyrnes.github.io/bayesian_sem/bayesian_sem.html
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Ed Merkle
Dan Quintana
12 months ago
2. Frontiers for Young Minds Now this is an excellent initiative. If you haven't heard of this, researchers write papers targeted at kids or teenagers. But the kicker is that your target audience co-peer reviews the paper! Usually, this is done collectively as a science class
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Frontiers for Young Minds
Frontiers for Young Minds is an open-access scientific journal written by scientists and reviewed by a board of kids and teens.
https://kids.frontiersin.org
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Ed Merkle
Sam Power
12 months ago
working extra hard on more administrative tasks so that I can clear time to properly read this - looks very interesting!!
arxiv.org/abs/2412.07999
'Fast Mixing of Data Augmentation Algorithms: Bayesian Probit, Logit, and Lasso Regression' - Holden Lee, Kexin Zhang
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Ed Merkle
Nick Tierney
about 1 year ago
Super stoked to announce that {greta} version 0.5.0 is now on CRAN! Thank you to Nick Golding for making this release happen, and for his continued support, I learnt a lot! Some features I'm really excited about: - Now uses Tensorflow 2.0 (which involved a heavy refactor of internals) - […]
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Original post on aus.social
https://aus.social/@njtierney/113472821691622080
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Ed Merkle
Cameron
about 1 year ago
Deck.blue
is good, you should check it out
add a skeleton here at some point
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Ed Merkle
James Uanhoro
about 1 year ago
Jorgensen & Garnier-Villarreal have a helpful paper showing several failures with "small-variance priors" in Bayesian SEM
doi.org/10.1007/978-...
These priors will fail for the types of misspecification we create in simulation studies, wrote a blogpost:
www.jamesuanhoro.com/post/2024/11...
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The limitations of small variance priors lie in their implementation | James Uanhoro
https://www.jamesuanhoro.com/post/2024/11/08/the-limitations-of-small-variance-priors-lie-in-their-implementation/
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Ed Merkle
Colin Carroll
about 1 year ago
I recently got to work on a fun chapter, and the preprint is now available:
arxiv.org/abs/2411.04260
We provide intuitions, examples, and recommendations for running MCMC in a world where GPUs and autodiff exist (like this world!)
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Running Markov Chain Monte Carlo on Modern Hardware and Software
Today, cheap numerical hardware offers huge amounts of parallel computing power, much of which is used for the task of fitting neural networks to data. Adoption of this hardware to accelerate statisti...
https://arxiv.org/abs/2411.04260
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Ed Merkle
Andreas Brandmaier
about 1 year ago
Here is John Alexander Silva Díaz's latest simulation study on how SEM forest perform finding omitted influential covariates in a SEM:
www.tandfonline.com/doi/full/10....
(image: CC4.0 by the original authors)
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Ed Merkle
Shravan Vasishth
about 1 year ago
Our Introduction to Bayesian Data Analysis for Cognitive Science (with Nicenboim and Schad) is now in production with CRC Press. It will remain freely available here:
bruno.nicenboim.me/bayescogsci/
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An Introduction to Bayesian Data Analysis for Cognitive Science
An introduction to Bayesian data analysis for Cognitive Science.
https://bruno.nicenboim.me/bayescogsci/
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Ed Merkle
Michael "Shapes Dude" Betancourt
about 1 year ago
Along the way I translated their causal graphs into corresponding variate-covariate models (
betanalpha.github.io/assets/case_...
), only without forcing specific linear regression structural assumptions. In my option this makes the role of the infamous “U” variable much less mysterious.
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(Co)variations On A Theme
https://betanalpha.github.io/assets/case_studies/variate_covariate_modeling.html
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Ed Merkle
Paul Bürkner
about 1 year ago
Our Python library BayesFlow implements methods for amortized Bayesian inference. You first train a neural network on simulated data. Then you obtain posterior inference on any real data almost instantly. Check out the dev branch for our new backend and user interface:
github.com/bayesflow-or...
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GitHub - bayesflow-org/bayesflow at dev
A Python library for amortized Bayesian workflows using generative neural networks. - GitHub - bayesflow-org/bayesflow at dev
https://github.com/bayesflow-org/bayesflow/tree/dev
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I think some people on here have strong opinions about the best chalk for writing equations. Could somebody help a person who is accustomed to using whatever chalk happens to be laying around?
about 1 year ago
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Ed Merkle
Aki Vehtari
about 1 year ago
The latest `brms` CRAN release added support for `priorsense` for easy prior and likelihood sensitivity analysis
doi.org/10.1007/s112...
``` > fit |> powerscale_plot_dens(variable='b_doseg', help_text=FALSE) + labs(x='Dose (g) coefficient', y=NULL) ```
#Bayesian
#rstats
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Ed Merkle
Achim Zeileis
about 1 year ago
🚨 New working paper about examining exam results
#rstats
📈 Infer student abilities and exercise difficulties with
#psychometric
models ✅ Detect and interpret differential effects of exercises in subgroups of an introductory
#math
exam
www.zeileis.org/news/exams/
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https://www.zeileis.org/news/exams/
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Ed Merkle
Sacha Epskamp
about 1 year ago
I gave a 2-hour workshop on Structural Equation Modeling and Confirmatory Factor Analysis in lavaan for the Psych
#rstats
Club. the recording is available here:
youtu.be/YrxvV8zlNLY?...
Supported by
@improvingpsych.org
!
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Introduction to CFA & Structural Equation Modelling in R
YouTube video by Psych #rstats Club
https://youtu.be/YrxvV8zlNLY?si=fnUzy3SLbZjnlpik
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blavaan 0.5-6 was recently released to CRAN. It has always done Bayesian structural equation modeling, but in recent years we have added some functionality for ordinal observed variables and for two-level SEM (random intercepts). More info here:
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Bayesian Latent Variable Analysis
Fit a variety of Bayesian latent variable models, including confirmatory factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/...
https://ecmerkle.github.io/blavaan/
about 1 year ago
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reposted by
Ed Merkle
about 1 year ago
After a great
#StanCon2024
, I've started a blog series on using copulas in Stan. This first post gives a quick introduction to what copulas are. I'll keep each post short but over time I hope to put together a repository of helpful content!
bggj.is/posts/stan-c...
#stats
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If It Bleeds, We Can Kill It – bggj
This is the first post in what’s going to be a series on using Copulas in Stan. Each post is going to be short to keep me from postponing writing them. In this post I lightly introduce the series and ...
https://bggj.is/posts/stan-copulas-1/
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Ed Merkle
Charles Driver
over 1 year ago
ctsem 3.10.1 is on CRAN, mostly fixing a bug introduced last update when outcome variables are both continuous and binary, and including a function for improved visualisation of moderation effects.
cran.r-project.org/web/packages...
#psychology
#rstats
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NEWS
https://cran.r-project.org/web/packages/ctsem/news/news.html
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Ed Merkle
Michael "Shapes Dude" Betancourt
over 1 year ago
If you want an effective color palette then don't try to get cute: just use one from
colorbrewer2.org
where all of the subtle work has already been done of you. If you're still tempted then read through all of
kennethmoreland.com/color-advice/
, and then still use ColorBrewer.
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ColorBrewer: Color Advice for Maps
https://colorbrewer2.org
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Ed Merkle
Aki Vehtari
over 1 year ago
priorsense package for prior and likelihood sensitivity analysis is now on CRAN. It works with Stan (brms, rstan or cmdstanr) fits, or just posterior draws. See more in Noa Kallioinen's post at
discourse.mc-stan.org/t/priorsense...
#Bayes
#MCMC
#rstats
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Priorsense 1.0 is now on CRAN
priorsense 1.0 has been released and is now available on CRAN. priorsense is an R package for efficiently checking whether the posterior is sensitivity to changes to the prior or likelihood (see the ...
https://discourse.mc-stan.org/t/priorsense-1-0-is-now-on-cran/35635
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Ed Merkle
Charles Driver
over 1 year ago
Some quantitative psychology (longitudinal emphasis) positions available with me at Uni Zurich from September on, rebleets appreciated! Postdoc:
jobs.uzh.ch/offene-stell...
PhD:
jobs.uzh.ch/offene-stell...
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Psychometrika will convert to gold open access in 2025. The new publisher, Cambridge, has agreements with many universities (including in the US) that make the open access possible. Anyone who cannot pay the APC will be waived.
www.psychometricsociety.org/post/psychom...
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Psychometrika Converting to Open Access! - Psychometric Society
New agreement with Cambridge University Press for 2025
https://www.psychometricsociety.org/post/psychometrika-converting-open-access
over 1 year ago
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Ed Merkle
Stephen Wild
over 1 year ago
Looks interesting:
venpopov.com/posts/2024/i...
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Ven Popov - Introducing the Bayesian Measurement Modeling R Package (bmm)
Making Bayesian measurement modeling in psychology accessible, reliable & efficient
https://venpopov.com/posts/2024/introducing-bmm/
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Ed Merkle
Dr. Amy, PsyD
over 1 year ago
I love how when we first got the internet, Wikipedia was an "unreliable source" and now it's one of the last remaining websites that's actually fact checked
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Ed Merkle
Ernie Smith
over 1 year ago
We now have a website.
udm14.com
add a skeleton here at some point
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Ed Merkle
Charles Driver
over 1 year ago
ctsem 3.10.0, for continuous and discrete time dynamic systems modelling, is up on CRAN. bug fix for certain time-varying par models; correlation approach is improved; ctACF function for auto and cross correlation plots, discussed in example here
osf.io/preprints/os...
github.com/cdriveraus/c...
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GitHub - cdriveraus/ctsem: Hierarchical continuous time state space modelling
Hierarchical continuous time state space modelling - cdriveraus/ctsem
https://github.com/cdriveraus/ctsem
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At last week's NCME conference, I did a workshop on Bayesian latent variable modeling with a focus on the blavaan package. We discussed factor analysis, item response models, and two-level structural equation models. Slides and code are at the first bullet:
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Resources
blavaan
https://ecmerkle.github.io/blavaan/articles/resources.html
over 1 year ago
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Ed Merkle
Cameron
over 1 year ago
Read
@vickiboykis.com
stuff. It is good. Hat tip to
@akhilrao.bsky.social
add a skeleton here at some point
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Ed Merkle
Daniel Heck
over 1 year ago
New paper by my PhD student
@matzekloft.bsky.social
now published in Behavior Research Methods (open access)🥳 Measuring the variability of personality traits with interval responses: Psychometric properties of the dual-range slider response format
doi.org/10.3758/s134...
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Ed Merkle
Andreas Brandmaier
over 1 year ago
New version of R package semtree now on CRAN:
cran.r-project.org/web/packages...
featuring leaner package imports.
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Ed Merkle
Filippo Valsorda
over 1 year ago
This might be the best executed supply chain attack we've seen described in the open, and it's a nightmare scenario: malicious, competent, authorized upstream in a widely used library. Looks like this got caught by chance. Wonder how long it would have taken otherwise.
add a skeleton here at some point
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Ed Merkle
Andreas Brandmaier
almost 2 years ago
Our latest preprint with Ulman Lindenberger and Ethan McCormick (
@emccormick.bsky.social
) on "Optimal Two-Time Point Longitudinal Models for Estimating Individual-Level Change: Asymptotic Insights and Practical Implications". Enjoy at OSF:
osf.io/3g2z6/
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