My personal experience, and anecdotes from friends, agreed with these observations.

Finally, the R package we needed, but don't deserve. I can already hear @benneely.com cackling from across the country. Thanks to @willfondrie.com for alerting me to this amazing repo.

Preparing for my flight, 20 items on the to-do list but nine books loaded up on my Kindle. Hmm...

🎓 Upcoming Online Course: R/Bioconductor for Mass Spectrometry & Proteomics 📅 November 17–19, 2025 Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor. 👉 Register & learn more: www.physalia-courses.org/courses-work...

Fantastic project led by @bo-wen.bsky.social. Excited to see the future uses of AI and transfer learning in proteomics. #massspec #proteomics www.nature.com/articles/s41...

It is going to SNOW at HUPO?! I have zero professional clothes for snow.

I try the newest version of DIA-NN, version 2.3 and its new Infini search approach on some Lumos and tismTOF HT datasets. If you're new to DIA-NN this might be a good video to watch. youtu.be/MIMnDw0loCk

Get Connected at the HUPO World Congress through WhatsApp! Join the HUPO 2025 WhatsApp group here: https://chat.whatsapp.com/CMu3ooxDsqhKCAX05WGLeI?mode=wwt #HUPO2025 #Proteomics #ScienceNetworking #USHUPO #HUPO

Day 1 of the @asms.org Fall Workshop on "Fundamentals of Instrumentation" and oh boy I am humbled. www.asms.org/conferences/...

Nature suggests you use their "Manuscript Adviser" bot to get advice before submitting I uploaded the classic Watson & Crick paper about DNA structure, and the Adviser had this to say about one of the greatest paper endings of the century:

A popular post on LinkedIn related to the reliability of current state-of-the-art instrumentation. #teammassspec Related, anyone know how many more scientists are employed in marketing compared to R&D?

What changed? @talusbio.bsky.social of course 😜

Hey @asms.org peeps. I’m running for VP for programs and I’d like your vote. Check out the asms web site for details and you will see an email with voting instructions in the near future. I approach this position with lots of experience organizing scientific conferences & I ❤️ asms. Please re-sky.

Some new content at GitHub: github.com/pwilmart/pow... We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.

A new, nerdy paper. We figured out (some) of the rules underlying cell-permeability of probes and designed ligands that light up, grab, and move proteins around. Awesome @hhmijanelia.bsky.social x @uwmadison.bsky.social x @stjuderesearch.bsky.social collaboration! www.pnas.org/doi/10.1073/...

Online Now: Cryo-EM reveals open and closed Asgard chromatin assemblies Online now:

www.genengnews.com/topics/artif... 1/2

endpoints.news/takeaways-fr... “The first patient who dies because of an error based on an AI algorithm? Front page of the New York Times. It will take years to fix,” Ravitsky said. “[...] if the jump is done unwisely, it could take years to clean up the broken, exacerbated crises of trust.”

Chemoproteomics v. Boltz-2: "These cases...point to the need to re-train ML co-folding tools on datasets enriched in more diverse types of small molecule-protein interactions...to avoid biased predictions derived from memorization of common orthosteric ligand poses" www.biorxiv.org/content/10.1...

The next Ubuntu Proteomics Summer School will take place in George, South Africa! Hear more about it here: youtube.com/shorts/4M9uZ... To register go to: ubuntuproteomics.co.za/registration... #proteomics #summerschool #SouthAfrica

Need to do some cutting edge Proteomics Differential expression? Maybe give Limpa a try! Guaranteed to rise to the occasion ...despite its name ! youtu.be/vqeOT8xcycc

For those who perform thermal proteome profiling (TPP) experiments, you might find this new data analysis approach (and open source Python software) useful. Developed by postdoc @jfhevler.bsky.social 🙏 arxiv.org/abs/2508.096...

DNA damage provides a bright spot in rhabdoid & epithelioid sarcomas ASCI member Mark Kentis @kentsisresearch.bsky.social show combined EZH2/ATR inhibition improves response in SMARCB1-deficient tumor models via epigenetic induction of transposase-derived PGBD5: www.jci.org/articles/vie...

Best method for RELATIVE protein abundance from #proteomics experiments?? 🤔🤔🤔 #TeamMassSpec www.reddit.com/r/proteomics...

Join us Nov. 3–4 for the #ASMSFallWorkshop on Fundamentals of Instrumentation. This 2-day program offers an in-depth look at the essential technologies that drive modern mass spectrometry from ion sources to analyzers and detectors. This is an IN-PERSON event. Register here: https://bit.ly/4okbr41

🚀 Registration is open for EuBIC-MS Winter School 2026! ❄️🧬 📍 Harrachov, Czechia 🎙️ Keynotes | 🛠️ Workshops | 🤝 Networking Supported by @denbi.bsky.social This event is a must for anyone in #Bioinformatics, #Proteomics, or #Metabolomics. 🔗 eubic-ms.org/events/2026-... #EuBIC2026 #MassSpec @eubic-ms.org

Wrapping up the skyline.ms virtual workshop on #MassSpectrometry #proteomics with Advanced Proteomics: data independent acquisition today, post-translational modifications tomorrow. @juank1892.bsky.social @arianashannon.bsky.social @miriamabele.bsky.social (anybody else on bsky?) 🖥️🧬🧪

Dear network. It's a pleasure to share that the Mexican Proteomics Society is organising the tenth edition of our symposium. All omics sciences and systems biology-related topics are welcome! We will share more details soon.

Recently discussed in a Skyline course but I'm keen to hear from a broader audience. For those in metabolomics and lipidomics, how do you verify your search engine results and quantify analytes? Would the ability to import your search engine results into Skyline be useful?

Meet the PIs powering ProtAIomics. Explore the labs & projects and apply for our 16 fully funded PhD positions: www.protaiomics.eu #ResearchCareers #Proteomics #ArtificialIntelligence #MSCA #PhDOpportunities #FullyFundedPhD

Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀 It automates the manual work of extracting method parameters, presenting them in a structured and comparable view. (A thread 🧵)

Oh man, my calendar is marked @proteomicsnews.bsky.social

Increasingly in favour of the Marie Kondo approach to collaborations in science. Does your collaborator spark joy? If not ➡️♻️🗑️ No one's skills or knowledge are so unique or indispensable that they get to make your day miserable with every interaction. 🧪🔭

Skyline Online Session 3 just kicked off. Ariana Shannon of @mayoclinic.org organized a great 2-day introduction to the skyline.ms software for quantitative mass spectrometry proteomics. 💻🧬 #TeamMassSpec #proteomics

After like a thousand pages' worth of fantasy and scifi, my brain is so not ready for even the pop-sci version of Bayesian statistics. Everything Is Predictable: How Bayesian Statistics Explain Our World www.goodreads.com/book/show/19...

Circulating DNA reveals nucleosome occupancy patterns that are associated with nucleosome-DNA affinity and are affected in cancer https://www.biorxiv.org/content/10.1101/2025.10.08.681110v1

Wrapping up the 2025 Skyline Online Small Molecule course! Fantastic instructors and presenters, including Haley from the Baker lab with an insightful ion mobility crash course. Great discussion and interaction from participants this year—looking forward to next year! #teammassspec

On my way back to Seattle after my first Forbeck Forum at the beautiful Lake Geneva. Really interesting conference format: <20 people, 45 minutes to "present", maximum TWO slides. Lots of good discussion and I learned a ton -- and probably got myself into even more work/collaborations 😂

All proteins matter! www.cell.com/iscience/ful...

Still got our latest preprint bookmarked in an unread tab of your browser? We got you. @afederation.bsky.social presenting @talusbio.bsky.social's work-in-progress on Wednesday! 🧬 🖥️ 🧪 #MassSpectrometry #Proteomics

I am going to repost our job ad because we are not getting many applicants! Like anywhere, there are pros and cons, so if you have questions just DM or email me. #academicjobs #neuroskyence #neuroethology #academicsky

Do you have an exciting experiment that you'd love to do using proteomics in the context of your work? YPIC funds 5000 eur for your research idea to come to life! ⬇️⬇️⬇️⬇️⬇️

Reminder 👇 Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy? ⏲️ 3 year position 📍 Bolzano, 🇮🇹 👉 apply if you like: - #rstats SW development - @bioconductor.bsky.social - large-scale #metabolomics data analysis - hiking ⛰️ 🔗 bit.ly/46AMawx

Illuminating the Druggable Proteome with an AI Protein Profiling Platform www.researchsquare.c... --- #proteomics #prot-preprint

Boosting Malonylation Site Detection with AlphaFold2 In the ongoing evolution of proteomics, understanding post-translational modifications (PTMs) has become critical. Among these modifications, malonylation, a less commonly studied yet impactful alteration of lysine residues on proteins, presents…

I am always more than a little skeptical when someone characterizes phosphorylation acceptor either observed or not (0/1). Pretty much the definition of a base rate fallacy. #proteomics

🥧 Silicone bakeware and chemical exposure A study found that silicone baking trays release cyclic siloxanes into food and air during baking, with young children facing the highest exposure. 🔗 www.sciencedirect.com/science/arti... #SciComm #Toxicology 🧪

Finally, we're looking for someone to join our #MassSpec Core Facility to support all the protein/peptide MS & development needs of our research groups utilising: 🧪Protein chemistry 📈Liquid chromatography ⚛️Tandem mass spectrometry 🖥️Data analysis More at: www.cruk.manchester.ac.uk/career/mi-25...

Good to see better integration of (low bias) industry employees within publishing and scientific societies.

Me to my future self as I write a wildly ambitious abstract that I now will have to make possible