Romain Koszul
@rkoszul.bsky.social
đ€ 799
đ„ 221
đ 80
#3Dgenome
,
#3R
,
#chromatin
,
#synbio
,
#microbiome
... Opinions are my own.
reposted by
Romain Koszul
Alejandro Montenegro
20 days ago
On this day, in 1961, two articles appeared in Nature announcing the isolation of messenger RNA (mRNA)
www.cell.com/current-biol...
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Who discovered messenger RNA?
Cobb looks back at the complicated series events that led to the discovery of messenger RNA, highlighting the often difficult problem of attributing credit for scientific advances.
https://www.cell.com/current-biology/fulltext/S0960-9822(15)00606-5?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982215006065%3Fshowall%3Dtrue
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A quick notice: the Hi-C scaffolder InstaGRAAL is available on PyPI, with an -endtoend mode that should facilitate homemade scaffolding project. "pip install instagraal" and info here:
github.com/koszullab/in...
(non contractual movie since we removed the openGL visual long ago :-)
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29 days ago
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Romain Koszul
Marie-Eve VAL
29 days ago
This one means a lot. Our paper, âLarge extrachromosomal replicons are widespread across bacterial lineages and show coordinated replication termination and spatial coupling with the chromosome,â is out!
doi.org/10.1038/s414...
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Large extrachromosomal replicons are widespread across bacterial lineages and show coordinated replication termination and spatial coupling with the chromosome - Nature Communications
Bacterial genomes often include extrachromosomal replicons, ranging from small plasmids to chromosome-scale replicons. Here, Czarnecki et al. analyse more than 40,000 complete bacterial genomes and sh...
https://doi.org/10.1038/s41467-026-72671-7
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Romain Koszul
Emmanuel Laurentin
about 1 month ago
www.lemonde.fr/planete/arti...
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Lâappel Ă lâaide du MusĂ©um national dâhistoire naturelle, trĂšs dĂ©labré : « Les ossements minĂ©ralisĂ©s explosent littĂ©ralement »
Moisissures dans les collections, bibliothĂšque inondĂ©e, fissures dans les murs⊠Alors que lâĂ©tablissement cĂ©lĂšbre ses 400 ans, fort dâune importante frĂ©quentation et dâune renommĂ©e scientifique intern...
https://www.lemonde.fr/planete/article/2026/04/19/l-appel-a-l-aide-du-museum-national-d-histoire-naturelle-tres-delabre-les-ossements-mineralises-explosent-litteralement_6681481_3244.html
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Happy to share our review of the past, recent, and future applications of synthetic genomics in studying the 3D functional organization of chromosomes, a set of approaches that are gaining momentum!
www.sciencedirect.com/science/arti...
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Synthetic chromosomes for 3D functional genomics: from principles to AI-guided design
The role of genome 3D organization for fundamental chromatin processes, such as long-range promoter-activator regulatory interactions, remains ambiguoâŠ
https://www.sciencedirect.com/science/article/pii/S0959437X26000389
about 2 months ago
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Romain Koszul
Pierre Bataille
about 2 months ago
Nerd alert: 10âŻ000 bandes pirates de concert - enregistrĂ©es sur plus de 30 ans - rendues disponibles Ă tout le monde
www.dexerto.com/entertainmen...
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Man who recorded over 10,000 live concerts is releasing them all online for free - Dexerto
A music fan from Chicago is digitizing and uploading his four-decade-long collection of live concert recordings to the internet.
https://www.dexerto.com/entertainment/man-who-recorded-over-10000-live-concerts-is-releasing-them-all-online-for-free-3350541/
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Romain Koszul
Jean Léon Maßtre
2 months ago
Big change for researchers with disabilities who seek a faculty position in France. Positions are now open to any lab in the country and there are 2 positions for biology labs.
carrieres.cnrs.fr/actualites/r...
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Recrutement 2026 de chercheuses et chercheurs en situation de handicap - CNRS CarriĂšres
Les candidats retenus signent un contrat dâun an, qui peut ĂȘtre renouvelĂ© pour une durĂ©e nâexcĂ©dant pas celle fixĂ©e initialement. Pendant cette pĂ©riode, ils bĂ©nĂ©ficient des mĂȘmes conditions de travail, droits et avantages que les chercheurs stagiaires de la fonction publique.
https://carrieres.cnrs.fr/actualites/recrutement-2026-de-chercheuses-et-chercheurs-en-situation-de-handicap/
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Romain Koszul
Maxim Greenberg
3 months ago
Very excited to announce the FIRST symposium on epigenome editing! These tools are becoming widely used in mol bio, ag & therapy. It's time to bring leaders together to discuss this rapidly growing and exciting field. And why not in Paris! Please register & share! (1/2)
ctrlepiedit.sciencesconf.org
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Romain Koszul
SFM Microbial Pathogenesis
3 months ago
đŹ New work from the Mazel Lab engineers programmable conjugative plasmids to selectively target MDR bacteria and the resistance plasmid pOXA-48, blocking its spread in complex communities. âïž
@amazeld.bsky.social
& coll.
@pasteur.fr
đ
shorturl.at/GZdJu
#MicroSky
#AntibioticResistance
#Conjugation
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Romain Koszul
CRBM-Montpellier
4 months ago
We are hiring!
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Romain Koszul
Nico Rascovan
4 months ago
Institut Pasteur (
@pasteur.fr
) is recruiting new young PIs to open new groups in the Institute. Deadline is February 9th! Don't miss the opportunity!
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Un peu de lecture
@paris.fr
www.nytimes.com/2025/11/30/m...
www.nytimes.com/2025/11/30/b...
www.theguardian.com/world/2026/j...
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Amsterdam prepares to âban the fatbikesâ amid rise in serious accidents
Experts say souped-up e-bikes pose big risk for children aged from 12 to 15, who account for many A&E cases
https://www.theguardian.com/world/2026/jan/25/amsterdam-prepares-to-ban-the-fatbikes-amid-rise-in-serious-accidents?CMP=share_btn_url
4 months ago
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Romain Koszul
Manuel Ares-Arroyo
5 months ago
Bacteria chromosomes contain Genomic Islands that provide virulence, antibiotic resistance, MGE-defence,... They transfer between cells, but the mechanism of most remains elusive. Here we explore the conjugative capacity of these mysterious Genomic Islands.
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.01.13.699239v1
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Romain Koszul
Gilles FISCHER
5 months ago
Last work of the lab showing that Repeated losses of self-fertility shaped heterozygosity and polyploidy in yeast evolution | PNAS
www.pnas.org/doi/10.1073/...
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PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
https://www.pnas.org/doi/10.1073/pnas.2525679123
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Romain Koszul
Frédérique Le Roux
5 months ago
Seeking expressions of interest from researchers abroad for a Canada Impact+ Research Chair ($1M/year Ă 8 + up to $6M CFI) in AI-enabled antibiotic discovery and/or AMR, phage & phage-based derivatives. Email me a short vision, CV, and 3â5 key papers. Deadline: March 10, 2026 (Intake 2: June 15).
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Romain Koszul
Association Anticor
5 months ago
#USA
- Le gouvernement Ă©tats-unien entend multiplier les sanctions contre des personnalitĂ©s europĂ©ennes, Ă lâimage de lâancien commissaire europĂ©en Thierry Breton, interdit de visa. Les magistrats qui ont condamnĂ© Marine Le Pen en mars dernier seraient menacĂ©s.
#AnticorVeille
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Les magistrats ayant condamnĂ© Marine Le Pen dans le viseur de lâadministration Trump - L'HumanitĂ©
Le gouvernement Ă©tats-unien entend multiplier les sanctions individuelles contre des personnalitĂ©s europĂ©ennes, Ă lâimage de lâancien commissaire europĂ©en Thierry Breton,...
https://www.humanite.fr/monde/administration-trump/les-magistrats-ayant-condamne-marine-le-pen-dans-le-viseur-de-ladministration-trump
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Romain Koszul
Dan Vergano
6 months ago
RFK, Jr.âBacked Lyme Disease Conspiracy Theory May Be Probed under New Bill
www.scientificamerican.com/article/rfk-...
President Donald Trump is expected to sign a defense bill this week that orders an investigation into whether the U.S. military bioengineered Lyme disease
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RFK, Jr.âBacked Lyme Disease Conspiracy Theory May Be Probed under New Bill
President Donald Trump is expected to sign a defense bill this week that orders an investigation into whether the U.S. military bioengineered Lyme disease
https://www.scientificamerican.com/article/rfk-jr-backed-lyme-disease-conspiracy-theory-may-be-probed-under-new-bill/
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Romain Koszul
Institut Pasteur | 130 years of biomedical research
6 months ago
đŹ Call to create junior research groups at the Institut Pasteur Focus: Infectious diseases, host-microbe interactions, vaccines Special interest: AI methodologies đ Deadline: Feb 9, 2026 đ„ 2-12 years post-PhD Apply now đ
research.pasteur.fr/en/call/crea...
#JobOpportunity
#Research
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Creation of new junior research groups at the Institut Pasteur - Call for applications 2026 - Research
The Institut Pasteur is launching an international call to recruit new junior research group leaders leveraging cutting-edge transdisciplinary approaches to exploring infectious diseases, host-microbe...
https://research.pasteur.fr/en/call/creation-of-new-junior-research-groups-at-the-institut-pasteur-call-for-applications-2026/
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Romain Koszul
CNRS
6 months ago
#RejoignezLeCNRS
đ«” Les concours chercheurs CNRS 2026 ouvrent le 8/12 ! Envie de faire avancer la science au sein dâun des plus grands organismes de recherche ? đ
carrieres.cnrs.fr/concours-...
#ConcoursChercheurs
#Science
#Recherche
#Icicarecrute
#recrutement
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Romain Koszul
Sam J Wilson
6 months ago
How does fever work? Our new Science paper shows how elevated body temperature can protect against severe influenza and that avian-origin viruses escape this defence. This is likely one reason why bird flus and some pandemic influenzas can be so severe.đ§”
www.science.org/doi/10.1126/...
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Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals
Host body temperature can define a virusâs replicative profileâinfluenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted t...
https://www.science.org/doi/10.1126/science.adq4691
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Romain Koszul
Quantian
7 months ago
Take this quiz to die instantly
www.americansurveycenter.org/quiz/
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Beyond the Ballot Quiz - The Survey Center on American Life
https://www.americansurveycenter.org/quiz/
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Romain Koszul
Institut Jacques Monod
7 months ago
#JobOffer
đŒ Un poste susceptible dâĂȘtre vacant de Professeur en stabilitĂ© des gĂ©nomes devrait sâouvrir pour la rentrĂ©e 2026 au sein de lâInstitut Jacques Monod âĄïž Informations concernant ce poste et la procĂ©dure de candidature đ
www.ijm.fr/poste-de-pro...
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Romain Koszul
Greg Jefferis
8 months ago
Excited to share our new
#biorxivpreprint
: âSexual dimorphism in the complete connectome of the Drosophila male central nervous systemâ
www.biorxiv.org/content/10.1...
We describe the
#connectomics
reconstruction and analysis of an entire adult
#maleCNS
#drosophila
central nervous system. 1/10
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Romain Koszul
David Bikard
8 months ago
Entretien pour Brut sur la vie Miroir, l'ingénierie génétique et l'éthique de ces recherches:
www.brut.media/fr/videos/sc...
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Manipulations gĂ©nĂ©tiques, virus créés par lâIA, bactĂ©ries miroirs : quelles limites Ă la recherche scientifique ?
Elles pourraient aider à lutter contre les cancers⊠mais aussi détruire toute trace de vie sur Terre ! Ce sont les bactéries miroirs. En avez-vous déjà entendu parler ? Et la vie miroir, ça vous dit q...
https://www.brut.media/fr/videos/sciences-technologies/sciences/manipulations-genetiques-virus-crees-par-l-ia-bacteries-miroirs-quelles-limites-a-la-recherche-scientifique
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Romain Koszul
The Francis Crick Institute
8 months ago
We're now recruiting early career group leaders at the Crick to lead ambitious research programmes and explore bold scientific questions. Hear our Director, Edith Heard, explain why the Crick is a unique place for curiosity-driven research. Apply now âĄïž
www.crick.ac.uk/careers-stud...
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Romain Koszul
Stephan Gruber
8 months ago
How do SMC complexes load onto DNA to get ready for loop extrusion?
@roisnehamelinf.bsky.social
& co discovered that Wadjet, an SMC complex involved in bacterial DNA immunity, performs some impressive molecular gymnastics đ€žââïžđ€žââïžđ€žââïž. Check out the new paper:
www.cell.com/molecular-ce...
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Romain Koszul
Jean-Yves Tinevez
8 months ago
Job alert! We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? See also on the forum:
forum.image.sc/t/research-e...
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Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
https://forum.image.sc/t/research-engineer-in-bioimage-analysis-for-the-researchers-of-the-inidex-formula/116903
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Romain Koszul
Tung Le
8 months ago
Independent research fellowships leading to tenured positions at the John Innes Centre. Repost = nice. Thank you very much!!!
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Romain Koszul
Géraldine Laloux
8 months ago
đNew preprint!
#MicroSky
đ°ïžWe chart the full, synchronized lifecycle of a predatory bacterium using Hi-C, RNA-seq, ChIP-seq & microscopy. đ§ŹWe uncover dramatic shifts in nucleoid architecture & transcription, tightly coordinated with predation.
www.biorxiv.org/content/10.1...
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Dynamics and interplay of gene expression and chromosome organization across a predatory lifecycle
The obligate predatory bacterium Bdellovibrio bacteriovorus alternates between a motile attack phase and a growth phase inside another bacterium, during which it undergoes multiple rounds of DNA repli...
https://www.biorxiv.org/content/10.1101/2025.09.24.678257v1
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Romain Koszul
Mehdi Hasan
9 months ago
Whatâs more astonishing: 1) that the president clearly believes, and repeatedly suggests, that asylum seekers are people from mental asylums, or 2) that no journalist has ever challenged him on this and no mainstream media outlets have done any deep dives on this story?
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New paper! We generated and/or (re)analyzed ~100
#metagenomics
Hi-C datasets to provide a comprehensive analysis of bacterial and viral metagenomes across VERY different environments. Congratulations to all authors especially Amaury Bignaud and
@mmarbout.bsky.social
for the huge work!
#metaHiC
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9 months ago
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Romain Koszul
Gilles FISCHER
9 months ago
New preprint from the lab: we show that the ability to switch mating type was lost at least 13 times independently in the evolution of S. cerevisiae. At least 27% of isolates are heterothallic with a strong association with polyploidy and heterozygosity
www.biorxiv.org/content/10.1...
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Repeated losses of self-fertility shaped heterozygosity and polyploidy in yeast evolution
Evolutionary transitions in mating strategy have profound consequences for genetic variation and adaptation. In Saccharomyces cerevisiae, mating-type switching is a central feature of the life cycle t...
https://www.biorxiv.org/content/10.1101/2025.09.12.675800v1
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Romain Koszul
Harmit Singh Malik
9 months ago
www.cell.com/cell/abstrac...
A host organelle (in sea slugs) integrates stolen chloroplasts for animal photosynthesis
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A host organelle integrates stolen chloroplasts for animal photosynthesis
Sea slugs steal foreign chloroplasts and store them in specialized organelles that facilitate photosynthesis and eventual digestion to mediate starvation resistance.
https://www.cell.com/cell/abstract/S0092-8674(25)00637-3?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867425006373%3Fshowall%3Dtrue
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Romain Koszul
Tobias Warnecke
9 months ago
Please re-post: Interested in chromatin and its evolution? Good news! There's still time to join us in beautiful Catalonia (9-12 Dec) to discuss eukaryotic, bacterial, archaeal, and viral chromatin and how it all hangs together
meetings.embo.org/event/24-evo...
Abstract deadline: 30 September
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EvoChromo: Evolutionary approaches to research in chromatin
Chromatin is the complex of DNA, RNA and protein that is found making up the chromosomes in eukaryotic cells. Chromatin is essential for proper genome function and is involved in chromosome segregatiâŠ
https://meetings.embo.org/event/24-evo-chromo
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Romain Koszul
Institut Pasteur | 130 years of biomedical research
9 months ago
đ Applications for Institut Pasteur's PhD programs open Sept 1-Oct 20, 2025 for October 2026 entry. Apply to up to 4 projects across 6 programs: PPU, PPU-IMAGINE
@institutimagine.bsky.social
,
[email protected]
, PPU-EID
@upcite.bsky.social
& more đ§Ź Register now âïž
www.pasteur.fr/en/education...
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Romain Koszul
Eduardo Rocha
9 months ago
Willing to join us
@pasteur.fr
for a PhD for a project on how interactions between mobile genetic elements shape bacterial adaptation? Subject to be tailored to candidates with keen interest in evolution, genomics, computational biology, microbiology. Check
www.pasteur.fr/en/education...
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Romain Koszul
The Cecere Laboratory
9 months ago
đœïžđ§Ź How do diet and gut microbes shape fertility across generations? đȘ±đŹ Our Laboratory at
#InstitutPasteur
is recruiting a PhD student to study epigenetic inheritance of fertility using C. elegans. Fully funded via the International PPU program. Apply now! đ
#PhDposition
#Epigenetics
#Inheritance
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Romain Koszul
Zeynep Baharoglu
9 months ago
So excited our antibiotic potentiation story is out đ€© Led by the extraordinary
@manonlang.bsky.social
with
@fox-science.bsky.social
&
@amazeld.bsky.social
+amazing collaborators
@immunobladder.bsky.social
@imaneelmeouche.bsky.social
đŠ We believe it can make a difference in
#AMR
infections!
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Uridine as a potentiator of aminoglycosides through activation of carbohydrate transporters
Uridine boosts aminoglycoside treatment efficiency against antibiotic-susceptible as well as antibiotic-resistant E. coli strains.
https://www.science.org/doi/10.1126/sciadv.adw7630
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Romain Koszul
Jolan C. Bertrand
9 months ago
(Suite) en tapant votre nom dans la barre de recherche de cette database :
www.theatlantic.com/technology/a...
(hĂ©sitez pas Ă checker plusieurs versions de votre nom, Ă intervertir nom et prĂ©nom etc.) pour voir si une ou plusieurs de vos oeuvres y sont. Et si vous ĂȘtes effectivement concernĂ©-es (2/)
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Search LibGen, the Pirated-Books Database That Meta Used to Train AI
Millions of books and scientific papers are captured in the collectionâs current iteration.
https://www.theatlantic.com/technology/archive/2025/03/search-libgen-data-set/682094/
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Romain Koszul
Elphege Nora Lab at UCSF
10 months ago
New preprint with
@gfudenberg.bsky.social
We find the rate of cohesin loop extrusion in cells is set by NIPBL dosage and tunes many aspects of chromosome folding. This provides a molecular basis for NIPBL haploinsufficiency in humans. đ§”đ
www.biorxiv.org/content/10.1...
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NIPBL dosage shapes genome folding by tuning the rate of cohesin loop extrusion
Cohesin loop extrusion is a major driver of chromosome folding, but how its dynamics are controlled to shape the genome remains elusive. Here we disentangle the contributions of the cohesin cofactors ...
https://www.biorxiv.org/content/10.1101/2025.08.14.667581v1
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New work from
@beckof.bsky.social
and our lab's collaboration, with
@alengronne.bsky.social
! Multifaceted influence of transcription on yeast chromosome folding... loop extrusion of course but also active promoters making loops, bypassing centromeres boundaries
www.sciencedirect.com/science/arti...
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RNA Pol II-based regulations of chromosome folding
The spatial organization of eukaryotic genomes and its dynamics are of functional importance for gene expression, DNA replication, and segregation. StâŠ
https://www.sciencedirect.com/science/article/pii/S2666979X25002265
10 months ago
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Romain Koszul
Joan Stavo-Debauge
10 months ago
Les Start-up françaises ont un coup Ă jouer : c'est les seules Ă pouvoir proposer des experts de niveau HDR* đ
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J.M. Berger
10 months ago
I feel like Harvard, or at least MIT, should be able to assemble a team of viciously-minded nerds to fight back against this bullshit using unconventional tactics
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Ah ouais quand mĂȘme.
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10 months ago
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Romain Koszul
Didier Mazel
10 months ago
A 2-year postdoc position in my lab, under the supervision of P-Alex Kaminski, on Z-DNA phages and the benefit given by ZTGC DNA and the replication machinery, with attempt to create a Z based minireplicon
research.pasteur.fr/en/job/a-two...
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A two year post-doctoral position at the BacterialGenome Plasticity Unit starting October 1st - Research
https://research.pasteur.fr/en/job/a-two-year-post-doctoral-position-at-the-bacterialgenome-plasticity-unit-starting-october-1st/
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Romain Koszul
Sudarshan Pinglay
11 months ago
Excited to share our work with
@julietrolle.bsky.social
& Jef Boeke. We developed a 'shotgun' method to screen millions of synthetic metabolic pathways to enable mammalian cells to grow without two essential nutrients for the first time in >500 million years!
doi.org/10.1101/2025...
Thread...
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A shotgun approach for highly multiplexed mammalian metabolic engineering
Mammalian metabolic engineering is critical to advancing basic biology, bioproduction, and cell therapy. However, as pathway complexity increases, so does the size of both the combinatorial design spa...
https://doi.org/10.1101/2025.07.08.663766
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Romain Koszul
Rami Ismail (Ű±Ű§Ù Ù)
11 months ago
Bye forever, WeTransfer.
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Romain Koszul
CNRS Ăcologie & Environnement
11 months ago
@cnrsecologie.bsky.social
regrette profondĂ©ment l'adoption de cette loi Ă la vision court-termiste & ses consĂ©quences graves sur lâenvironnement, qui mĂ©prise santĂ© & bien-ĂȘtre de la population & le rĂŽle des espĂšces sauvages dans la prod. agricole. La communautĂ© scientifique n'a pas Ă©tĂ© entendue.
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Neale Mahoney
11 months ago
This is unethical, but tempted to include white text telling an AI reviewer to reveal itself in my next submission
asia.nikkei.com/Business/Tec...
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'Positive review only': Researchers hide AI prompts in papers
Instructions in preprints from 14 universities highlight controversy on AI in peer review
https://asia.nikkei.com/Business/Technology/Artificial-intelligence/Positive-review-only-Researchers-hide-AI-prompts-in-papers
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