Chris Jackson
@cajackson.org
📤 433
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Systems biology
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Laurel Oldach
4 days ago
Thermo Fisher has responded to research integrity activists who spotted apparent manipulation in its antibody catalog: "In ... preparing antibody images for publication on our website, some images may have been adjusted to clarify for presentation purposes." More:
cen.acs.org/research-int...
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Max Kennerly
9 days ago
LOL last night Stephen Colbert spent an hour hosting public access "Only in Monroe"
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Stephen Colbert Returns to Only in Monroe After Late Show Finale - LateNighter
First on LateNighter: Stephen Colbert told viewers exactly where they'd find him after The Late Show. Turns out he wasn’t kidding.
https://latenighter.com/news/stephen-colbert-returns-to-only-in-monroe-after-late-show-finale/
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Sholto David
10 days ago
Earlier this week I posted an example of a fake western blot provided by ThermoFisher to demonstrate the validity of a p53 antibody. I considered it an amusing curiosity. In fact Thermo Fisher Scientific has systematically manipulated antibody validation data!
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Rebecca R Helm
12 days ago
Life hack from a marine biologist: When your blue sea dragons need a little snack, remember that they never evolved to swim, so you have to drive the Portuguese man-o-war around and pick them up like a little bus 🎥 by me during field work :)
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The Onion
12 days ago
Revival Of Internship Program Heralds CEO’s Daughter Coming Of Age
https://bit.ly/3PuB1I2
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Mount St. Helens Archive
14 days ago
May 18, 1980 | 8:32 a.m. The ground shudders. A M5.1 quake hits beneath Mount St. Helens. Weakened critically, the north face bulge collapses outward. Within seconds, a pyroclastic density surge bursts through the disintegrating slope. The clock strikes zero.
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Thomas Dietterich
19 days ago
We are implementing a similar policy at
@arxiv.bsky.social
. If there is incontrovertible evidence of LLM slop in a paper, this means the authors did not take the time to read the LLM output and we can't trust anything else in the paper. Penalty is 1 year ban from arXiv followed by...
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Science Magazine
23 days ago
Breaking news: Indiana University plant microbiologist Roger Innes has been locked out of his laboratory by the school in response to a request by one of his federal funders. The move comes after Innes complained about the government’s prosecution of Chinese postdocs.
https://scim.ag/4tsDqRr
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After USDA request, Indiana plant biologist locked out of lab by school
Move comes after Roger Innes complained about the government’s prosecution of Chinese postdocs
https://scim.ag/4tsDqRr
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Edward Wallace
about 1 month ago
How do fungi grow directionally? We think part of the mechanism involves local translation of mRNA near the tip, especially of cell wall components. Delighted to share our preprint showing that an RNA-binding protein, SsdA/Ssd1, is trafficked to the tip of growing fungal filaments.
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Eiko Fried
about 1 month ago
FDA grants breakthrough device designation for schizophrenia/bipolar bloodtests, based on below paper with n=30 per disorder, "using 'leave-one-out' analyses, indicating that the models should be predictive when applied to independent data cohorts." Ouch.
pmc.ncbi.nlm.nih.gov/articles/PMC...
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Exon Array Biomarkers for the Differential Diagnosis of Schizophrenia and Bipolar Disorder
This study developed potential blood-based biomarker tests for diagnosing and differentiating schizophrenia (SZ), bipolar disorder type I (BD), and normal control (NC) subjects using mRNA gene express...
https://pmc.ncbi.nlm.nih.gov/articles/PMC5981774/
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J. Craig Venter Institute
about 1 month ago
It is with great sadness that we announce J. Craig Venter has died. 🧪🧬
www.jcvi.org/media-center...
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J. Craig Venter, genomics pioneer and founder of JCVI and Diploid Genomics, Inc., dies at 79
La Jolla, California—April 29, 2026—The J. Craig Venter Institute (JCVI) announced that J. Craig Venter, Ph.D., the Institute’s founder, board...
https://www.jcvi.org/media-center/j-craig-venter-genomics-pioneer-and-founder-jcvi-and-diploid-genomics-inc-dies-79
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Ethan Mollick
about 1 month ago
This is an actual line that was added to the official system prompt for Codex for GPT-5.5 by OpenAI. Usually the system prompt is as minimal as possible, so I assume it would otherwise mention goblins a lot. AIs are weird.
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Colette Delawalla, PhD
about 1 month ago
UPDATE: No audience questions were taken for Jay's talk.
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Ariel Levine
about 1 month ago
📣 Exciting news: my lab is moving to the Krembil Institute at the University of Toronto’s University Health Network in Fall 2026. We’ll be recruiting for all roles, so reach out if you’re interesting in joining us to study spinal circuits for sensorimotor control
www.levine-lab.org
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Home | Levine Lab
https://www.levine-lab.org
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I read Vigilance by Robert Bennett a couple years ago and thought 'this is kinda over the top and a little unrealistic' I owe that book an apology
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about 1 month ago
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Claire Willett
about 1 month ago
it’s First Communion Sunday at Mass which means it’s time for my favorite thing in the world: TINY FORMALWEAR
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Altmetric
about 2 months ago
THREAD All the Colours of the Rainbow At Altmetric we look for where research has been shared and cited online. In addition to granting us permanent entry into Pride Month, the Altmetric rainbow matches different sources of attention to research that we find. What are they all? Let's go: 1/24
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Micah McCurdy
about 2 months ago
Would like to dedicate this post to the people who yelled at me for giving the Sabres 58% to make the playoffs in my season preview this past summer.
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geoffrey
about 2 months ago
yes. they pay more based on income in taxes for the thing that is then “free” for everyone. this is how public services work
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David A Knowles
2 months ago
@nygenome.org
is hiring Genomic AI Fellows! (fancy postdoc positions) If you're interested in working at the interface of AI and genomics in a great environment please apply at:
jobs.silkroad.com/NYGenome/Car...
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NYGC Genomic AI Fellows - 101 Avenue of the Americas, 7th Floor, New York, New York - New York Genome Center
Find a career with New York Genome Center
https://jobs.silkroad.com/NYGenome/Careers/Jobs/779
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Chanda Prescod-Weinstein 🌌
2 months ago
If all goes according to plan, in a few hours, a crew of astronauts will begin a journey that will take them on a loop around the moon. Here's a video that NASA put together to help people visualize the journey through space, first orbiting the earth before looping around the moon and flying home 🔭
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Danielle Navarro
2 months ago
this is so stupid. you simply cannot do behavioural research this way. the core question here is how humans act in this situation and at the risk of having to explain a methodological point so basic it should never have to be said, you need humans for that
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Marisa Kabas
2 months ago
sorry i never responded to your email, i didn't want to and then i forgot
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Gillian Brockell
3 months ago
I just heard back from the reporter, and I am genuinely speechless. Is “we don’t care” the business model?
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Cameron Patrick
3 months ago
My motivation for perservering as a statistician even when it feels bleak comes from Ian Gordon: sometimes the best we can do is make sure that the research that gets done is better than it would have been if we weren't involved in it
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Ariel Levine
3 months ago
Check out the newest work from our, from Fabricio Nicola
@fabricionicola.bsky.social
on mouse jumping and spinal cell types. Excellent collab with
@vulcnethologist.bsky.social
www.biorxiv.org/content/10.6...
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Pretty much the same reason all the gene regulatory network inference models don't work as well as people think they do
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3 months ago
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Chris Jackson
Claus Wilke
3 months ago
New paper showing that much of the apparent success of protein language models in predicting mutational effects is a mirage: These models mostly memorize sites. 1/
www.biorxiv.org/content/10.6...
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https://www.biorxiv.org/content/10.64898/2026.03.08.710389v1
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Páll Melsted
3 months ago
Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data. The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv
www.biorxiv.org/content/10.6...
and github
github.com/pachterlab/k...
Figure 1 shows they key result
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K
3 months ago
sem condições esse daqui
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John Scalzi
3 months ago
I get asked to show up to book clubs, online and offline. Here is why from now on the answer is always "no." If you think this might have something to do with "AI" ruining yet another thing for everyone, you're absolutely 100% correct.
whatever.scalzi.com/2026/03/03/i...
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Indefinite Book Club Hiatus
Today in “Things that ‘AI’ has ruined”: No, I won’t be able to show up to your book club’s online/offline gathering, and the reason for this is simple: I, and li…
https://whatever.scalzi.com/2026/03/03/indefinite-book-club-hiatus/
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NY Times Pitchbot
3 months ago
Critics say that Trump's war with Iran could have a lot of blowback. But there is no historical precedent for the United States overthrowing an Iranian government and then facing 50 years of hostility from Iranians.
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Jonathan Eisen
3 months ago
Crap
www.online-tribute.com/DavidBotstein
David Botstein passed away. I worked with him at Stanford for a few years in designing and teaching a course on "The Heart". My heart is heavy right now. He was a wonderful mentor.
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David Botstein | 1942 - 2026 | Online-Tribute.com
David was a beloved husband, father, brother, scientist, teacher, mentor, musician, friend, who touched the lives of thousands. David’s wide-ranging scientific career spanned decades with a legacy o…
https://www.online-tribute.com/DavidBotstein
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Chris Jackson
Brooke Foster
3 months ago
crying in the club* (*at my desk) bc stanley tucci took the USA women's hockey team out for a meal at his favorite restaurant and they gave him his own jersey
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Micah
3 months ago
they need to import this to the Stanley Cup playoffs, watching hockey players be handed stuffed animals while they seethe is the new funniest thing in the world
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Olúfẹ́mi O. Táíwò
3 months ago
the only place this should happen is academic conferences
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Max Haase
3 months ago
Our paper is now out in Nature: “Ancient co-option of LTR retrotransposons as yeast centromeres”
www.nature.com/articles/s41...
A short thread on how retrotransposons helped give rise to yeast point centromeres. 1/14
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Ancient co-option of LTR retrotransposons as yeast centromeres - Nature
Evolutionarily related ‘proto-point’ centromeres providing resolution to the evolutionary origins of point centromeres are identified in yeast, and comparison shows they evolved in an ancestor with re...
https://www.nature.com/articles/s41586-025-10092-0
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Alex Merz 🇺🇸🇨🇦🇺🇦
3 months ago
🧵 After years out of the field, I and my lab are again working on bacterial type IV pili. We have just posted our first preprints, and I'm excited to share what we have discovered. This shows Neisseria gonorrheae bacteria infecting a human epithelical cell. Here, you can see the pili in red. 1/
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Seychelle Vos
4 months ago
🧪🧬New preprint We present cryo-EM structures of reconstituted CTCF–nucleosome complexes, showing CTCF dimerization drives nucleosome oligomerization into defined higher-order assemblies. Disrupting CTCF–CTCF interfaces in mESCs reduces looping and impairs differentiation.
tinyurl.com/CTCF-nucleos...
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penny
4 months ago
woke up and chose linguistics violence today: the word 'queue' is just the letter Q followed by four silent letters waiting in line behind it. they're literally queuing. this is the most honest word in the english language and i will not be taking questions at this time
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Franck Martin
4 months ago
I'm thrilled to anounce that our latest study on ALS/FTD neurodegenerative diseases has been published. Very proud to be part of this excting project. Many thanks to Clotilde Lagier Tourenne for an amazing longlasting and fruitfull collaboration,
#ALS
#FTD
#Ribosomes
www.science.org/doi/10.1126/...
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Blocking RAN translation without altering repeat RNAs rescues C9ORF72-related ALS and FTD phenotypes
GGGGCC (G4C2) repeat expansion in C9ORF72 is the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Toxicity is thought to result from the accumulation...
https://www.science.org/doi/10.1126/science.adv2600
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David Zipper
4 months ago
Very cool paper measuring pedestrian volumes on NYC streets and examining crash risks: "Intersections with the highest pedestrian injury risk are often outside Manhattan, where exposure-adjusted danger is the greatest."
www.nature.com/articles/s44...
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Nick Ulivieri
4 months ago
The eastern shore of Lake Michigan - between South and Grand Haven - is loaded with mountain ranges of ice 😱
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All The Right Movies
4 months ago
BLAZING SADDLES was released 52 years ago today. Acclaimed as one of the great comedies of the 1970s, and among the most popular of director Mel Brooks, the story of how it was made is a cascading waterfall of creative alternatives... 1/36
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Jeremy Berg
4 months ago
A sad day at NIH... The NIH Record was a great way for NIH folks to find out what was going on across NIH. Many important stories published there over the years.
nihrecord.nih.gov/2026/01/30/n...
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NIH Record Ceases Publication
This will be the final issue of the NIH Record.
https://nihrecord.nih.gov/2026/01/30/nih-record-ceases-publication
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Vincent D. Warmerdam
4 months ago
seriously: I really enjoy using matplotlib now.
youtu.be/5ZxczGlrkyQ
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We made matplotlib interactive. You're welcome.
Our favourite plotting library may just be matplotlib again now that we made it interactive with a puck! It may sounds strange at first, but pucks turn these...
https://www.youtube.com/watch?v=5ZxczGlrkyQ
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Jeremy Berg
5 months ago
My (now) weekly update on 2026 NIH funding. New and competitive renewal awards. 3 new awards (compared to ~100 expected based on recent years). No new ICs... still just NIA, NINDS, NIDCD, and NIDCR. 1/2
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Kevin M. Kruse
5 months ago
Holy hell, what an obituary
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Renfrew Christie Dies at 76; Sabotaged Racist Regime’s Nuclear Program
https://www.nytimes.com/2026/01/14/world/africa/renfrew-christie-dead.html?unlocked_article_code=1.ElA.l_uO.quxTSV0lHbGV&smid=url-share
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Tomer Ullman
5 months ago
once again being driven insane by ML conference submissions
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Michelle Girardi
5 months ago
Excited to share this with
#BlueAndGoldSky
Hasek took us back to the rink he grew up on in Pardubice, Czechoslovakia and introduced us to the people who had the greatest influence on his young life.
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