Hey #MPMI crowd, we are having trouble finding co-proteome papers looking into the host and pathogen proteome at the same time. I know they must exist but can’t find them. Any suggestions?

Resequencing hundreds or thousands of individuals from the same species has become routine... but processing all those genomes efficiently? Still a headache! Here's my solution that used to be lab-internal but that I am happy to share: crolllab.github.io/genomepanel_...

Very excited to see this work out today! Discovering viral immune antagonists directly from predicted protein structures. 🤩 www.science.org/doi/10.1126/... Huge thanks to the amazing collaborators! 🤗

Plant weirdness. After injecting agro rhizogenes into the stem of Kalanchoe, they start sprouting roots from stem after few weeks later.

Is the lesson from this that, if ones reasoning is freed from the pull of gravity, one can still publish with MDPI?

@thaisdalsasso.bsky.social is applying new tools to address the evolution and functional diversification of secreted proteins of fungal plant pathogen. Preprint here: www.biorxiv.org/content/10.6...

What we more recently learnt about Tiberius: the models trained on softmasked genomes are very sensitive to how the genome was masked for inference. It seems safer to use models trained on unmasked genomes. #genomeannotation #geneprediction github.com/Gaius-August...

Out in @NaturePlants. We discover that the fungal pathogen Fusarium graminearum secretes an apoplastic effector that disrupts the N-glycosylation of a maize immune receptor, thereby inducing its degradation via selective autophagy. Very proud of the team~ doi.org/10.1038/s414...

Out in New Phytologist! The annotated blueprint: integrated functional genomic resources for a model tetraploid wheat cv. Kronos 🌾 chromosome-scale genome, high-conf annotations, manually curated 1000+ NLRs, ~3000 remapped datasets 🔗 doi.org/10.1111/nph.... #Plants #Genomics #FunctionalGenomics

the estimated 1 billion biochemical reactions that occur every second in every cell of our bodies 🤯

🎉📣 #TAIR12, the latest reannotation of the Arabidopsis thaliana genome, is now available under accession number PRJEB100887 on ENA and NCBI! Thank you all the volunteer researchers whose hard work has made this possible! #plantscience #plantbiology 🧪 bit.ly/3ZHtneT

Out in @science.org this week, two fungal enzymes synthesise DHHA, which controls cell wall porosity and turgor in plant pathogenic fungi www.science.org/doi/10.1126/... #mycology #plantscience

📣 Our latest story just dropped on bioRxiv:: A structurally unique effector shared between Verticillium dahliae and Fusarium oxysporum is involved in cotton defoliation and virulence on other hosts www.biorxiv.org/content/10.6... 🧵

Thrilled to announce that I am joining the Editorial Board of Molecular Plant–Microbe Interactions as a Senior Editor! 🌱🦠 Grateful for the opportunity to serve this vibrant research community and help amplify impactful science 👏 🔗 apsjournals.apsnet.org/page/mpmi/ed...

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This article is now published! academic.oup.com/nargab/artic... We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.

📣 Our lab is seeking a postdoc to study mutation mechanisms in fungi using cutting-edge sequencing + computational biology. No active posting/grant right now, but we’re excited to host postdoc fellowship applicants in our comparative immunology team. Interested? Reach out DM email. krasilevalab.org

Ever wondered if diverse plant species respond similarly when infected by the same exact pathogen? Infect different asterids and rosids with the same Botrytis genotypes and teh short answer, quite differently. www.biorxiv.org/content/10.6... @annajomu.bsky.social @ccaseys.bsky.social (1/3)

Although it went online in 2025, here is our second paper of 2026! 🎉 Bravo to @jiaxuwu.bsky.social for leading this (possibly) controversial, but much-needed, analysis. Enjoy! Now out in the January 2026 issue of Trends in Genetics. 🔗 www.cell.com/trends/genet...

Towards a quantitative view of NLR evolution in genome space -- check out where we think the field of #NLR #evolution research is heading in this review led by Luzie Wingen and Aurélien Tellier. ecoevorxiv.org/repository/v... #plantscience

Comment in @nature.com: "Food will be more affordable — if we double funds for agriculture research now" www.nature.com/articles/d41... A global drop in public and private investment in agricultural science in the past four decades is partly to blame for high food prices, an analysis reveals.

We are thrilled to announce the first official release (v0.1.8) of #𝗯𝗲𝗱𝗱𝗲𝗿, the successor to one of our flagship tool, #𝗯𝗲𝗱𝘁𝗼𝗼𝗹𝘀! Based on ideas we conceived of long ago (!), this was achieved thanks to the dedication of Brent Pedersen. 1/n

AI model Helixer predicts eukaryotic genes ab initio, directly from a plain text FASTA file. No RNA-seq. No protein homology. No repeats, hints, or curated evidence. Raw genome → accurate gene models. Deep learning + HMM, published in @natmethods.nature.com www.nature.com/articles/s41...

gggenomes: A Grammar of Graphics for Comparative Genomics thackl.github.io/gggenomes/ #Rstats

Rewriting the code of plant immunity go.nature.com/475WgV7

Just when you thought plant galls couldn't be of any more shapes! Such cool findings! "Dasineura asteriae Reprograms the Flower Gene Expressions of Vegetative Organs to Create Flower-Like Gall in Aster scaber" onlinelibrary.wiley.com/doi/10.1111/...

1/13 Thankfully, both you and your plants have a lot of sophisticated ways to fight off invading pathogens. In our new preprint, we describe a new way in which animals and plants share a common strategy to ward off harmful bacteria. www.biorxiv.org/content/10.1...

New preprint! 🐛 Root-knot nematodes hijack root cells, turning them into feeding sites and making plants very sick. Using a cross-species scRNA-seq approach we mapped this process and show how this knowledge can be used to engineer resistant crops.🌱 A summary🧵 : www.biorxiv.org/content/10.1...

“from so simple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved.”

Check out our new pre-print! ✨ We cloned AvrWTK4, the first wheat powdery mildew effector recognised by a tandem kinase protein, and show that an HMA-like integrated domain in WTK4 acts as pathogen decoy. Discover the whole story on bioRxiv ⬇️

Fantastic review on methodological developments in protein structural phylogenetics academic.oup.com/gbe/article/...

a new clubroot susceptibility gene discovered through GWAS

First a pentamer, then a hexamer… now an octamer! The riddle of the enigmatic CCG10-NLR immune receptor family cracked open 🔥 Congrats Guanghao @GuanghaoGuo He Zhang @mhz1989 Selva @M__Selvaraj et al. #NLRbiology #plantsci #immunology

Today's going exceptionally well 😅. Our paper describing the screening of Arabidopsis natural accessions against a Canadian clubroot pathotype is out now!

Glad to see this out! We discussed the confusion around the ever-growing list of clubroot resistance genes and what truly qualifies as the novel ones. The clubroot community needs a consistent nomenclature to keep track of the real progress. @jiaxuwu.bsky.social , @edelplopez.bsky.social

Happy to see this out! @jiaxuwu.bsky.social, @sohambio.bsky.social & I tackle the growing confusion in clubroot resistance gene naming. We call for a common nomenclature and a shared database to speed up durable resistance 🧬 🥦 Thank you @cp-trendsgenetics.bsky.social for a great editorial process!

📣 NEW PREPRINT 📝 We identified evolutionary origins of many fungal effectors! We show that fungi secrete lots of antimicrobial proteins, and that some of them were repurposed by plant pathogens for host immune suppression. www.biorxiv.org/content/10.1... cc @teamthomma.bsky.social

We’re excited to share our latest work on plant pathogen effector protein evolution @biorxivpreprint.bsky.social. With @kamounlab.bsky.social and Abbas Maqbool. www.biorxiv.org/content/10.1...

Thanks @plantphys.bsky.social for the highlight! Aquatic plants are beautiful and it's really cool to observe oxygen bubbles being produced realtime during photosynthesis! Pics from my old tank-

2️⃣ PhD Positions in the lab: 📢 #1: Microbiome Diversity and Evolution in Leafhoppers Across Canada 📢 #2: Morphological Changes in Plant Roots Induced by Plasmodiophorid Effectors 📨 To apply submit : * A cover letter * Your curriculum vitae * Academic transcripts Applications: [email protected]

We wrote a review on the free nucleotide pool as a central playground in human, bacterial, and plant immunity – now out in Nature Reviews in Immunology www.nature.com/articles/s41... Was fun to write this piece with Dina Hochhauser! Here is a thread to explain the premises 1/

Wow - an important component of a central human innate immune pathway was discovered based on homology to a bacterial anti-phage defense system A beautiful example showing how new knowledge on bacterial immunity translates to discoveries important for human health

Three back-to-back Salicylic Acid biosynthesis papers 1/3 www.nature.com/articles/s41...

Honored to share my journey and more importantly, how we can support the next generation of scientists in navigating the challenges of scientific mobility 🌍 Thank you @cp-trendsmicrobiol.bsky.social for this initiative and for giving visibility to stories that otherwise would have remained hidden 👏

www.nature.com/articles/s41... Remodelling autoactive NLRs for broad-spectrum immunity in plants

#2025ISMPMI tremendous effector-NLR screen with 1617 plants presented by Yin Yan. Following up new avr-R gene couples.

🎉 Exciting news during #2025ISMPMI Our AlphaFold sensor vs helper NLR paper is now published in @newphyt.bsky.social‬! Big thanks to the reviewers for their constructive feedback 🙏 📖 Check out the peer-reviewed version here 👇 🔗 nph.onlinelibrary.wiley.com/doi/10.1111/... bsky.app/profile/yusu...

Mamp-ml was built upon two decades of foundational research. To generate the training data required, I manually pulled receptor and epitope sequences from every paper I could find, small or large. In total, we were able to capture over 1,300+ combinations across 11 receptors and 91 plant species.