Have a look to the new study from the Frugier team at IPS2, about the sTDIF signaling peptide that modulates the root stele diameter and primary metabolism to accommodate symbiotic nodulation. ips2.u-psud.fr/en/articles/... #PlantScience

Check out the open access paper here: www.nature.com/articles/s41...

Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis! www.nature.com/articles/s41...

The histone variant H3.14 is an early player in the abiotic stress response of Arabidopsis. #PlantScience 🌾🧪 www.sciencedirect.com/science/arti...

ICYMI: New Online! A histone variant that manages abiotic stress in plants

#RNAsky #RNAbiology #PlantScience 🌾🧪

PhD Position: Root System Architecture and Plant Adaptation to Climate Change at the Institute of Plant Sciences of Montpellier (IPSiM) and the PhenoMEn team at the Amélioration Génétique et Adaptations des Plantes méditerranéennes et tropicales (AGAP) #PlantSciJobs

New in @natbiotech.nature.com: a team led by scientists at MSK and ‪University of Toronto have developed a new platform to facilitate the study of RNA-biding proteins (RBPs) across hundreds of species of plants, insects, and animals.

Only 3 out of 9 tools for detecting protein-coding sequences beat a naive baseline — popular methods often fail on real data. #genomics #bioinformatics #lncRNA bit.ly/3GgrDD2

Best practices in plant fluorescence imaging and reporting: A primer (Kirk J Czymmek , Yoselin Benitez-Alfonso , Tessa Burch-Smith , et al) doi.org/10.1093/plce... #PlantScience

We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): www.vandepoelelab.be/Jobs please re-share RT #ERC

Seminar by DR Kiran Mysore , Tuesday July 22, 2025 at 11:00 a.m . in the Red Room of the teaching building : " An update on Medicago Tnt1 resources and Engineering Agrobacterium to improve plant transformation and regeneration." You are all welcome #PlantScience

📜 Unlocking gene regulatory networks for crop resilience and sustainable agriculture 🧑‍🔬 Richalynn Leong, Xin He, Bob Sebastiaan Beijen, @dinglab.bsky.social, et al. 📔 @natbiotech.nature.com 🔗 www.nature.com/articles/s41... #️⃣ #PlantScience #PlantImmunity #Agronomy #PlantStress #PlantGenomics

I’m happy that our commentary is out! (It would be wonderful if this made a difference!) In defense of funding foundational plant science academic.oup.com/plcell/artic...

Seminar by Dr Marianne Kramer , Thursday July 10, 2025 at 11:00 a.m . in the Red Room of the teaching building : " Identification of a cleaved aberrant RNA associated with the initiation of transgene silencing." You are all welcome #PlantScience

Small DNA elements can act as both insulators and silencers in plants (Tobias Jores , Nicholas A Mueth , Jackson Tonnies , Si Nian Char , et al) doi.org/10.1093/plce... #PlantScience

🧬🌱 SPECIAL ISSUE EXPERT VIEW 🧬🌱 📖 Edera & Quadrana review how the interplay between histone variants and DNA methylation is essential for cellular function in Arabidopsis thaliana, with chromatin remodeling serving as a coordinating factor. 🔗 doi.org/10.1093/jxb/... #PlantScience 🧪

Hello! Ever wonder what's "talking to" your favorite transcript, but were too scared to ask? In our review in @cp-cellreports.bsky.social, @mardakheh.bsky.social and I highlight new RNA-focused tools for discovering RNA interactions across organizational scales. Checkit! tinyurl.com/ydn6e3ac

🌱🧬 SPECIAL ISSUE REVIEW 🌱🧬 Tremblay & Qüesta discuss how examining the seed-to-seedling transition can reveal how non-coding RNAs and epigenetic changes regulate transcription during developmental transitions. 🔗 doi.org/10.1093/jxb/... #PlantScience 🧪 @jiquesta.bsky.social‬

📜 Small DNA elements can act as both insulators and silencers in plants 🧑‍🔬 @tobiasjores.bsky.social, Christine Queitsch, et al. 📔 @theplantcell.bsky.social 🔗 academic.oup.com/plcell/advan... #️⃣ #PlantScience #PlantGenetics #PlantGenomics #PlantSynBio #PlantPromoters

📜 Hormonal regulation of primary root development 🧑‍🔬 Michela De Nittis, Mirko De Vivo, @raffolab.bsky.social, Sabrina Sabatini 📔 @cp-cellreports.bsky.social 🔗 www.cell.com/cell-reports... #️⃣ #PlantScience #RootBiology #PlantRoots #Phytohormones #Auxin #Cytokinin #PlantDevelopment

Looking for regulatory features in your RNA? (Tool made for non-plant species) academic.oup.com/nar/advance-...

I have created some #PlantScience resources here on Bluesky, including 𝐂𝐨𝐧𝐭𝐞𝐧𝐭 𝐅𝐞𝐞𝐝𝐬 & 𝐒𝐭𝐚𝐫𝐭𝐞𝐫 𝐏𝐚𝐜𝐤𝐬. The Feeds deliver plant science content with relevant hashtags to your timeline. The Starter Packs help you connect to other plant scientists. See this thread 🧵 for all feeds and starter packs 👇

Root expansion microscopy: A robust method for super resolution imaging in Arabidopsis (Magali S Grison , Guillaume Maucort , Amandine Dumazel , Dorian Champelovier , Yutaro Shimizu , Yohann Boutté , Mónica Fernández-Monreal , Emmanuelle M Bayer) doi.org/10.1093/plce... #PlantScience

Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae From: www.pnas.org/doi/10.1073/... #PlantScience #SecMet

📜 Construction of multi-targeted CRISPR libraries in tomato to overcome functional redundancy at genome-scale level 🧑‍🔬 Amichai Berman, Ning Su, Yuqin Zhang, @eilonshani.bsky.social, et al. 📔 @natcomms.nature.com 🔗 www.nature.com/articles/s41... #️⃣ #PlantScience #PlantTools #Tomato #PlantCRISPR

Reflections from the “Plant Sciences in the Anthropocene” Workshop – Two Weeks of Conversations, Insight, & Impact From the very 1st talk to the final wrap-up, the event was a deep dive into the challenges #plantscience faces in a changing world. buff.ly/tKLsxQI w @spsplantsciences.bsky.social

plants.peercommunityin.org, new Peer Community In .. PLANTS !

📜 Integrating Arabidopsis and crop species gene discovery for crop improvement 🧑‍🔬 Michael W. Bevan, Klaus F. X. Mayer, et al. 📔 @theplantcell.bsky.social 🔗 academic.oup.com/plcell/advan... #️⃣ #PlantScience #AppliedPlantScience #Crops #Agriculture #PlantBreeding #PlantGMOs #PlantGenomics

A comprehensive all-in-one CRISPR toolbox for large-scale screens in plants (Yanhao Cheng , Gen Li , Aileen Qi , Rushil Mandlik , Changtian Pan , Doris Wang , Sophia Ge , Yiping Qi) doi.org/10.1093/plce... #PlantScience

New OA Letter: "Re-analysis of mobile mRNA datasets raises questions about the extent of long-distance mRNA communication" rdcu.be/ehZmi A substantial number of transcripts, currently annotated as graft-mobile, lack statistical support from available RNA-seq data. #PlantScience

📜 A comprehensive all-in-one CRISPR toolbox for large-scale screens in plants 🧑‍🔬 Yanhao Cheng, Yiping Qi, et al. 📔 @theplantcell.bsky.social 🔗 academic.oup.com/plcell/advan... #️⃣ #PlantScience #PlantCRISPR #PlantMethods #PlantGenomics #PlantNGTs #PlantGE #PlantGenomeEditing

Seminar by Dr. Pablo Manavella , Monday May 05, 2025 at 2:00 p.m. in the Amphitheater(teaching building): The coupling between transcription, processing, and transport during miRNA biogenesis . You are all welcome #PlantScience

An interesting perspective and framework: #RNA condensates-not individual RNAs-may have acted as replicative units in early life. RNAs in condensate recruit similar RNAs, then the condensate divides once it reaches a critical size. #RNAsky

Automatic identification and annotation of MYB gene family members in plants doi.org/10.1101/2021... transfactor: Transcription factor activity estimation via probabilistic gene expression deconvolution doi.org/10.1101/2025...

Recruitment, rewiring, and deep conservation in flowering plant gene regulation doi.org/10.1101/2024... Genetic factors explaining anthocyanin pigmentation differences doi.org/10.1101/2023... #PlantSci #TranscriptionFactors

Twitter #Phd #PhDposition ▶️ We are hiring! *Please RT* and/or **Apply* Interested in the molecular mechanisms that regulate chromatin dynamics for plant development? Apply to our Doctoral School for a 3-year PhD position at the @IRIG, @LPCV in a beautiful university @UGA & city.

Very cool work on how a circular RNA (circRNA) made at an MIRNA locus represses expression of the primary miRNA transcript. Notably, Su et al.'s discovery began with a spontaneous mutant, confirming the awesome power of genetics aka APOG. www.nature.com/articles/s41...

REVIEW: Noncoding RNAs as Tools for Advancing Translational Biology in Plants (Carolina Attallah, Gabriela Conti, Federico Zuljan, Diego Zavallo, Federico Ariel) doi.org/10.1093/plce... #PlantScience

Tired of struggling with different tags to generate transgenic plants expressing your favorite protein ? Check out our latest preprint about ALFA technology and its MANY applications for plant biology. www.biorxiv.org/content/10.1... @lrsv-toulouse.bsky.social @cnrsbiologie.bsky.social

REVIEW: Arabidopsis as a model for translational research (Anna E Yaschenko, Jose M Alonso, Anna N Stepanova) doi.org/10.1093/plce... #PlantScience

AtSRGA: A shiny application for retrieving and visualizing stress-responsive genes in Arabidopsis thaliana (Yusuke Fukuda, Kohei Kawaguchi, Atsushi Fukushima) doi.org/10.1093/plph... #PlantScience

It's out! Detailed transcriptome atlas of mature Arabidopsis root undergoing secondary growth. Fantastic work by Munan Lyu and Hiroyuki Iida + other lab members, wonderful collab with @bertderybel.bsky.social lab on the scRNAseq analysis. @treebiocoe.bsky.social 1/x www.nature.com/articles/s41...

💻 🌿 A partitioned local depth algroithm reveals community structure using time series transcriptome datasets doi.org/10.1093/insi... #GRN #PlantScience 🧪

Finally! Im so excited to present to culmination of many years of work from the fantastic Defeng Shen and some great collaborators. For details, I have made a digested thread below, but if you are more interested feel free to reach out (and read the paper of course). www.science.org/doi/10.1126/...

New Article: "NERD-dependent m6A modification of the nascent FLC transcript regulates flowering time in Arabidopsis" rdcu.be/ed0Rf With News & Views: "A NERDy effect on flowering" rdcu.be/ed0RG #PlantScience

The IPS2 Omics platforms (POPS, InterATOME and Metabolome) are organizing on June 17 and 18, 2019 a symposium dedicated to the approaches they are developing: the SPOmics days on plant transcriptomics, metabolomics and interactomics. ips2.u-psud.fr/en/articles/... #PlantScience

@science.org Cryo-EM reveals mechanisms of natural RNA multivalency | Science www.science.org/doi/10.1126/... #RNAsky #RNAbiology #Cryo-EM