Exploring the genetic basis of cluster architecture-related traits in grapevine through a Genome-wide Association Study doi.org/10.1101/2025...

Domestication shaped the chromatin landscape of grain amaranth doi.org/10.1101/2025... Genomic characterization of a nematode tolerance locus in sugar beet doi.org/10.1101/2023...

PrinTE: A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction doi.org/10.1101/2025...

Inferring domestic goat demographic history through ancient genome imputation doi.org/10.1101/2025...

REGISTRATION NOW OPEN for the Safe Cassava Symposium- virtual, free, 27-28th October 2025 - 2x 1.5 h sessions/day Thanks to Global Plant Council for hosting. #cyanide #cassava #konzo #neurology #publichealth #plantsciencs #foodsecurity ⚕️☘️🌿🍃🌱🌾🪴 biology.anu.edu.au/research/div...

🌱From Frontiers in Agronomy: Bioherbicides offer multiple modes of action, from photosystem inhibition to auxin mimicry, but their complex chemistry makes mechanisms harder to define. (Zhenglin Zhang, Kassim Al-Khatib) ▶️ www.frontiersin.org/journals/agr... #PlantScience #WeedScience

📣Congress📣 The One Health Pangenome 2–5 December 2025, Valencia 🇪🇸 This 2nd edition is focused on the prokaryotic pangenome in the One-Health context. alocongress.com/pangenome2025 🧬 🖥️ 🦠🔬🧪 #OneHealthPangenome2025 #Valencia #OneHealth #Microbial #Genomics #Bioinformatics #Pangenome

💻 Expert NGS bioinformatics support—from design to analysis. 🔬🧬 Get high-quality results with ecSeq: www.ecseq.com/solutions/ngs... #NGS #Bioinformatics #Genomics

"Evolutionary Rewiring of Anthocyanin Biosynthesis Pathway in Poaceae" 🎨 We describe how grasses have reorganized the anthocyanin biosynthesis pathway through gene loss, regulatory shifts, and independent evolution: 🔗 doi.org/10.1101/2025... @bpucker.bsky.social @nancy-choudhary.bsky.social

Check out the ups and downs of anthocyanin biosynthesis in Poaceae 👇👇👇 #Evolution #Genomics

New Element in the Philosophy of Biology series—free to download until October 6! Walter Veit examines the role of models in evolutionary biology: their types, testability, and interrelations 👇📕 www.cambridge.org/core/element... #philsci #HPBio #evobio

Pretty cool to see that the tricot snapdragons I isolated are not all producing 3 true leaves! Compare that to my first isolate that is consistently symmetrically tri-leaf'd.

"Days to weeks"! My how the technology has advanced! Check out this cookbook for #Plant #Genome sequencing.

Fun to synthesize some exciting future directions for spatiotemporal genomics in this Tansley perspective. Check er out!

A milestone for plant genomics just out @natgenet.nature.com 130 bryophyte genomes! www.nature.com/articles/s41...

Exciting news! The results of Syafiq’s research visit are now online 🎉 Great to see such solid work from an undergrad pay off. If you are into gene duplication or plant evolution, check it out: 🔗 doi.org/10.1101/2025... @puckerlab.bsky.social #Genomics #Bioinformatics

Lil tricot doin so good! ☘️🐉

Optimizing selection of restriction enzymes for complexity-reduced genome sequencing in plants doi.org/10.1101/2025... Cookbook for Plant Genome Sequences doi.org/10.20944/pre...

Placing very long branch taxa in the plant tree of life: a case study with Dioscoreales mycoheterotrophs doi.org/10.1101/2025... Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data doi.org/10.1101/2023...

Thrilled to share the publication of CoExpPhylo in BMC Genomics: "CoExpPhylo – a novel pipeline for biosynthesis gene discovery" doi.org/10.1186/s128... #Bioinformatics #BigData #Evolution #Pathways @puckerlab.bsky.social @unibonn.bsky.social

Product inhibition can accelerate evolution doi.org/10.1101/2022...

NanoDel: a long-read sequencing pipeline for identifying large-scale mitochondrial DNA deletions validated in patient samples clinically diagnosed with mitochondrial disease and evaluated in glioblastoma doi.org/10.1101/2025...

Trait-dependent diversification and spatio-ecological limits drive angiosperm diversity unevenness across the Canary Islands archipelago doi.org/10.1101/2025...

A phylogeny aware analysis of gene function for the biodiversity genomics era doi.org/10.1101/2025...

Assistant Professorship in Plant or Fungal Genomics at the University of Wyoming eeik.fa.us2.oraclecloud.com/hcmUI/Candid...

MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment doi.org/10.1101/2025... Cookbook for Plant Genome Sequences www.preprints.org/manuscript/2... #Genomics #Bioinformatics #BigData #DataScience

This #review examines how advances in #plant #genomics and #SynBio have accelerated research on plant prenyltransferases in natural product synthesis, positioning them as a focal point for prenylated natural product-based #drug development. doi.org/10.1111/jipb... #PlantScience #medicine

Color changing flowers 🧬🎨- attempt #2 Older flowers (bottom) show dark red/ orange tints whereas young buds (top) display strong fuchsia color. Getting closer..

Fun-Sized Library Prep: Miniaturization is a valid method for per-sample cost reduction in targeted sequencing of angiosperm DNA doi.org/10.1101/2025...

✨Célia Souque just showcased the outcomes of the 12th Microbial Bioinformatics Hackathon at IMMEM XIV. She brilliantly presented the first sneak-peek of PORT – Plasmid Outbreak Reporting Tool! 🧬 Looking forward to continuing this collaboration with PORT! #IMMEM #Hackathon #Plasmids #ESGEM #ESGMAP

I'm so pleased this is out, I loved my PhD project so much! We found that natural fluctuations in light impacts both DNA methylation and gene expression, and identified a possible candidate (MCCA) for further exploration. Check it out ⬇️

Doing my homework 📚

Pylluminator: fast and scalable analysis of DNA methylation data in Python doi.org/10.1101/2025...

"Plant Genomics Lab Technician at USDA ARS, Hilo, HI, USA" Read more here: https://arabidopsis.org/news/jobs/view?file=168710.pdf #PlantSciJobs

If you're new to plant genomics research, don't miss the supplementary hands-on manual we included - it walks you through the major data analysis steps in a typical plant genomics project! ☘️ 🧬 #PlantScience #GenomeAssembly #OpenScience

Friday Flower 005: Arabidopsis thaliana 🌱✨ A tiny flower, but a giant in research, thale cress enabled our understanding of flower development through the "ABC Model". With this knowledge, their flowers can be essentially reprogrammed to produce micro-roses 🧬🌹

Learned something interesting about 🌱GMO regulations yesterday: Novel technologies will never be able to achieve a “history of safe use” because it was a single exceptional event in 2001 to allow a deregulation of mutagenesis ☢️🧬 That’s all, no future assessments and additions possible.

Registrations for the International Safe Cassava Network are now open. Free, online only. Interdisciplinary. More details coming soon - 4 x 2 hour sessions spread over 2 days #cassava #plantscience #cyanide #konzo #theISCN 🌿🌱🌾🧪 globalplantcouncil.org/event/intern...

CluSeek: Bioinformatics Tool to Identify and Analyze Gene Clusters doi.org/10.1101/2025... Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis doi.org/10.1101/2024... #Genomics #Bioinformatics

How long does it take to sequence a plant genome? The most decisive factor is the genome size, but with an efficient workflow, an annotated genome sequence can be available within days to weeks. Read the full story: www.doi.org/10.20944/pre... #Genomics #SciComm #SciArt #Bioinformatics #PlantSci

Join me, @needhibhalla.bsky.social @rachelzamzow.bsky.social and Gabriel Stein on Oct 6th 12.30 pm ET to discuss trust in open science shorensteincenter.org/new-event/ca...

TypeAssembly: Copy number estimation and allele typing for haplotype assemblies doi.org/10.1101/2025... 25 years of propagation in suspension cell culture results in substantial alterations of the Arabidopsis thaliana genome doi.org/10.1101/710624

A comparison of two universal angiosperm bait sets and the phylogenomics of Alismatales doi.org/10.1101/2025...

Systematic evaluation of the impact of promoter proximal short tandem repeats on expression doi.org/10.1101/2025...

Our new associated partner @bpucker.bsky.social at @puckerlab.bsky.social offers in December (8-10 and 10-12) two F2F training courses in Bonn about #Plant #genomics and functional #annotation. For more information see: Course 1 - www.denbi.de/training-cou... Course 2 - www.denbi.de/training-cou...

A Universal Duplex Sequencing Approach for Accurate Detection of Somatic Mutations doi.org/10.1101/2025... 25 years of propagation in suspension cell culture results in substantial alterations of the Arabidopsis thaliana genome doi.org/10.1101/710624

Phylogenomic challenges in polyploid-rich lineages: Insights from orthology inference and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae) doi.org/10.1101/2025...

Wild genes to the rescue: High-throughput genomics uncovers the wild source of broomrape resistance in sunflower doi.org/10.1101/2025...

DiscERN: An Automated Genome Mining Tool for the Discovery of Evolutionarily Related Natural Products doi.org/10.1101/2025...